Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_17220 Physcomitrium patens HOM05D007126 ORTHO05D008974 0.0e+00 1380.5 746 100.0
Mapoly0029s0043 Marchantia polymorpha HOM05D007126 ORTHO05D008974 8.9e-174 614.8 500 65.2
SMO367G1126 Selaginella moellendorffii HOM05D007126 ORTHO05D008974 3.4e-149 533.1 522 58.6
ATR0598G096 Amborella trichopoda HOM05D007126 ORTHO05D008974 4.6e-138 496.1 496 51.8
CBR_g19104 Chara braunii HOM05D007126 ORTHO05D008974 7.9e-138 495.4 514 57.6
Medtr8g099525 Medicago truncatula HOM05D007126 ORTHO05D008974 7.4e-136 488.8 509 50.7
CiPaw.11G120500 Carya illinoinensis HOM05D007126 ORTHO05D008974 1.3e-135 488.0 507 50.9
Aqoxy5G04057_Aqoxy5G04058 Aquilegia oxysepala HOM05D007126 ORTHO05D008974 2.8e-135 486.9 491 51.7
Lj4g0010714 Lotus japonicus HOM05D007126 ORTHO05D008974 1.1e-134 485.0 487 52.8
GSVIVG01019542001 Vitis vinifera HOM05D007126 ORTHO05D008974 1.4e-134 484.6 532 49.6
PGR031G2002 Punica granatum HOM05D007126 ORTHO05D008974 5.9e-133 479.2 485 51.5
HanXRQChr17g0534861 Helianthus annuus HOM05D007126 ORTHO05D008974 1.7e-132 477.6 487 50.7
Glyma.08G023000 Glycine max HOM05D007126 ORTHO05D008974 5.0e-132 476.1 508 50.4
CANSAT21G1075 Cannabis sativa HOM05D007126 ORTHO05D008974 8.5e-132 475.3 517 49.9
VMungo0251G2926 Vigna mungo HOM05D007126 ORTHO05D008974 1.9e-131 474.2 512 49.6
QL02p030251 Quercus lobata HOM05D007126 ORTHO05D008974 5.5e-131 472.6 513 49.3
Actinidia22167 Actinidia chinensis HOM05D007126 ORTHO05D008974 1.2e-130 471.5 488 50.4
Eucgr.D01749 Eucalyptus grandis HOM05D007126 ORTHO05D008974 1.2e-130 471.5 557 46.9
Manes.01G047820 Manihot esculenta HOM05D007126 ORTHO05D008974 2.7e-130 470.3 529 48.2
CSS0001738 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 6.1e-130 469.2 489 50.5
MBI06_g08479_MAGBIO Magnolia biondii HOM05D007126 ORTHO05D008974 7.9e-130 468.8 507 50.9
Duzib205G0473 Durio zibethinus HOM05D007126 ORTHO05D008974 1.8e-129 467.6 491 50.7
Migut.A00631 Erythranthe guttata HOM05D007126 ORTHO05D008974 2.3e-129 467.2 495 51.3
BraA09t37117Z Brassica rapa HOM05D007126 ORTHO05D008974 3.0e-129 466.8 489 49.7
TPR.G3456 Trifolium pratense HOM05D007126 ORTHO05D008974 3.0e-129 466.8 509 48.7
Sc22g0004970 Simmondsia chinensis HOM05D007126 ORTHO05D008974 5.1e-129 466.1 520 48.3
Hund11386 Selenicereus undatus HOM05D007126 ORTHO05D008974 6.7e-129 465.7 511 49.1
Atru.chr9.1971 Acer truncatum HOM05D007126 ORTHO05D008974 1.5e-128 464.5 498 49.2
Atru.chr9.1985 Acer truncatum HOM05D007126 ORTHO05D008974 1.5e-128 464.5 498 49.2
CAN.G390.5 Capsicum annuum HOM05D007126 ORTHO05D008974 1.5e-128 464.5 502 48.8
Sp2g00310 Schrenkiella parvula HOM05D007126 ORTHO05D008974 1.5e-128 464.5 489 49.7
Potri.001G090800 Populus trichocarpa HOM05D007126 ORTHO05D008974 2.0e-128 464.2 494 49.2
Thecc.03G299000 Theobroma cacao HOM05D007126 ORTHO05D008974 2.0e-128 464.2 492 49.6
CSS0007498 Camellia sinensis var. sinensis HOM05D007126 ORTHO05D008974 2.6e-128 463.8 489 49.9
A09p14710 Brassica napus HOM05D007126 ORTHO05D008974 3.3e-128 463.4 523 47.6
PGSC0003DMG400004995 Solanum tuberosum HOM05D007126 ORTHO05D008974 3.3e-128 463.4 527 47.6
Gohir.A12G236900 Gossypium hirsutum HOM05D007126 ORTHO05D008974 5.7e-128 462.6 492 50.0
BolC9t54678H Brassica oleracea HOM05D007126 ORTHO05D008974 9.7e-128 461.8 489 49.7
Gorai.008G255000 Gossypium raimondii HOM05D007126 ORTHO05D008974 1.7e-127 461.1 492 49.6
ECA246G3461 Erigeron canadensis HOM05D007126 ORTHO05D008974 2.2e-127 460.7 516 47.7
AL2G10420 Arabidopsis lyrata HOM05D007126 ORTHO05D008974 3.7e-127 459.9 518 47.3
CARHR046500 Cardamine hirsuta HOM05D007126 ORTHO05D008974 3.7e-127 459.9 516 48.6
Hma1.2p1_0440F.1_g153370 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 4.8e-127 459.5 531 47.6
Gohir.D12G238100 Gossypium hirsutum HOM05D007126 ORTHO05D008974 8.2e-127 458.8 492 49.8
BcaB07g31464 Brassica carinata HOM05D007126 ORTHO05D008974 1.8e-126 457.6 487 49.3
BcaC04g22569 Brassica carinata HOM05D007126 ORTHO05D008974 1.8e-126 457.6 490 49.2
Potri.003G140800 Populus trichocarpa HOM05D007126 ORTHO05D008974 2.4e-126 457.2 490 48.8
Solyc12g055940.3 Solanum lycopersicum HOM05D007126 ORTHO05D008974 4.1e-126 456.4 510 47.5
Nitab4.5_0000726g0050 Nicotiana tabacum HOM05D007126 ORTHO05D008974 5.3e-126 456.1 550 45.6
Sed0013130 Sechium edule HOM05D007126 ORTHO05D008974 9.1e-126 455.3 491 49.7
Thhalv10023389m.g Eutrema salsugineum HOM05D007126 ORTHO05D008974 1.2e-125 454.9 521 47.8
MD06G1108400 Malus domestica HOM05D007126 ORTHO05D008974 1.2e-125 454.9 513 48.0
Sopen12g024410 Solanum pennellii HOM05D007126 ORTHO05D008974 1.2e-125 454.9 522 46.9
Aa31LG2G1430 Aethionema arabicum HOM05D007126 ORTHO05D008974 1.5e-125 454.5 488 50.0
TWI15G1063 Tripterygium wilfordii HOM05D007126 ORTHO05D008974 2.0e-125 454.1 505 46.7
AUR62010848 Chenopodium quinoa HOM05D007126 ORTHO05D008974 3.4e-125 453.4 489 49.5
PSO063G3961 Papaver somniferum HOM05D007126 ORTHO05D008974 7.7e-125 452.2 509 49.1
Prupe.5G121000 Prunus persica HOM05D007126 ORTHO05D008974 7.7e-125 452.2 513 47.6
AT1G64430 Arabidopsis thaliana HOM05D007126 ORTHO05D008974 1.0e-124 451.8 489 48.1
Ciclev10019342m.g Citrus clementina HOM05D007126 ORTHO05D008974 1.0e-124 451.8 521 46.3
Lalb_Chr09g0332411 Lupinus albus HOM05D007126 ORTHO05D008974 2.2e-124 450.7 567 46.0
THA.LOC104817626 Tarenaya hassleriana HOM05D007126 ORTHO05D008974 5.0e-124 449.5 502 49.0
AUR62019847 Chenopodium quinoa HOM05D007126 ORTHO05D008974 2.5e-123 447.2 524 45.4
CsaV3_4G006650 Cucumis sativus L. HOM05D007126 ORTHO05D008974 2.5e-123 447.2 489 49.1
RcHm_v2.0_Chr7g0194681 Rosa chinensis HOM05D007126 ORTHO05D008974 2.3e-121 440.7 487 49.3
Haze_09075 Corylus avellana HOM05D007126 ORTHO05D008974 5.7e-120 436.0 592 42.2
Oeu009966.1 Olea europaea HOM05D007126 ORTHO05D008974 2.2e-119 434.1 515 47.2
ClCG07G011560 Citrullus lanatus HOM05D007126 ORTHO05D008974 3.7e-119 433.3 490 48.4
Cc08_g16150 Coffea canephora HOM05D007126 ORTHO05D008974 4.8e-119 433.0 469 48.4
arahy.Tifrunner.gnm1.ann1.U3A0V6 Arachis hypogaea HOM05D007126 ORTHO05D008974 2.4e-118 430.6 448 50.4
Sabra01G0067000 Salix brachista HOM05D007126 ORTHO05D008974 1.6e-117 427.9 433 50.6
HPP92_007857 Vanilla planifolia HOM05D007126 ORTHO05D008974 1.0e-116 425.2 487 47.2
EL10Ac5g12922 Beta vulgaris HOM05D007126 ORTHO05D008974 1.7e-116 424.5 503 46.9
DCAR_029908 Daucus carota HOM05D007126 ORTHO05D008974 1.7e-116 424.5 474 49.6
Nitab4.5_0004010g0090 Nicotiana tabacum HOM05D007126 ORTHO05D008974 1.5e-115 421.4 442 49.1
C09p17800 Brassica napus HOM05D007126 ORTHO05D008974 4.2e-115 419.9 446 49.3
Nn1g08439 Nelumbo nucifera HOM05D007126 ORTHO05D008974 5.5e-115 419.5 489 47.4
Lsat_1_v5_gn_3_10920 Lactuca sativa HOM05D007126 ORTHO05D008974 2.7e-114 417.2 519 45.5
Rhsim02G0244700 Rhododendron simsii HOM05D007126 ORTHO05D008974 5.2e-113 412.9 492 45.7
Psat7g210120 Pisum sativum HOM05D007126 ORTHO05D008974 1.7e-111 407.9 428 49.8
FvH4_5g04720 Fragaria vesca HOM05D007126 ORTHO05D008974 2.0e-109 401.0 449 49.0
arahy.Tifrunner.gnm1.ann1.GEY0M8 Arachis hypogaea HOM05D007126 ORTHO05D008974 4.2e-107 393.3 469 46.3
Lj2C166T10 Lonicera japonica HOM05D007126 ORTHO05D008974 5.7e-104 382.9 530 43.2
Cpa.g.sc79.28 Carica papaya HOM05D007126 ORTHO05D008974 6.3e-103 379.4 368 51.9
Zm00001eb028190 Zea mays HOM05D007126 ORTHO05D008974 7.0e-102 375.9 507 43.2
Peaxi162Scf00117g01130 Petunia axillaris HOM05D007126 ORTHO05D008974 4.5e-101 373.2 520 41.9
SGA_v2.0_scaffold305G47987 Striga asiatica HOM05D007126 ORTHO05D008974 1.5e-99 368.2 553 43.6
Hma1.2p1_0440F.1_g153360 Hydrangea macrophylla HOM05D007126 ORTHO05D008974 7.2e-99 365.9 595 38.7
MELO3C016299.2 Cucumis melo HOM05D007126 ORTHO05D008974 1.2e-96 358.6 449 44.8
unitig_37.g12131 Utricularia gibba HOM05D007126 ORTHO05D008974 2.6e-96 357.5 501 41.1
SalBow1G1535 Salvia bowleyana HOM05D007126 ORTHO05D008974 1.9e-91 341.3 546 41.4
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 1.0e-89 335.5 526 39.2
TAR374G0215 Trochodendron aralioides HOM05D007126 ORTHO05D008974 4.6e-85 320.1 322 51.2
vmacro11349 Vaccinium macrocarpon HOM05D007126 ORTHO05D008974 1.2e-82 312.0 568 37.0
CDE08G1056 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 1.6e-82 311.6 344 46.8
Phvul.002G298304 Phaseolus vulgaris HOM05D007126 ORTHO05D008974 3.6e-82 310.5 319 51.1
Cre14.g611950 Chlamydomonas reinhardtii HOM05D007126 ORTHO05D008974 7.1e-70 269.6 619 34.1
SEGI_23531 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 2.4e-57 228.0 202 57.4
Carub.0002s0034 Capsella rubella HOM05D007126 ORTHO05D008974 2.8e-50 204.5 231 48.9
SEGI_08908 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 1.3e-47 195.7 212 51.9
Carub.0002s0035 Capsella rubella HOM05D007126 ORTHO05D008974 1.2e-37 162.5 217 41.9
Os08g0332700 Oryza sativa ssp. japonica HOM05D007126 ORTHO05D008974 1.2e-37 162.5 192 46.9
FAN18G3621 Fragaria x ananassa HOM05D007126 ORTHO05D008974 2.8e-34 151.4 174 48.3
CDE08G0877 Ceratophyllum demersum HOM05D007126 ORTHO05D008974 1.0e-31 142.9 146 53.4
FAN08G3578 Fragaria x ananassa HOM05D007126 ORTHO05D008974 1.9e-30 138.7 192 42.7
Dinv37525 Davidia involucrata HOM05D007126 ORTHO05D008974 9.3e-30 136.3 169 46.7
SEGI_34352 Sequoiadendron giganteum HOM05D007126 ORTHO05D008974 3.0e-28 131.3 117 63.2
LjContig00482g0010930 Lotus japonicus HOM05D007341 ORTHO05D009075 1.9e-22 112.1 147 46.9
Cfa021999 Carpinus fangiana HOM05D007126 ORTHO05D008974 6.9e-17 93.6 170 32.9
Cpa.g.sc79.27 Carica papaya HOM05D007126 ORTHO05D008974 2.2e-07 62.0 72 50.0
FAN13G2101 Fragaria x ananassa HOM05D007126 ORTHO05D008974 9.4e-06 56.6 60 53.3


User provided reference genes

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