Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_1450 Physcomitrium patens HOM05D002536 ORTHO05D006290 4.7e-241 837.4 411 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4243 Anthoceros agrestis HOM05D002536 ORTHO05D006290 2.9e-118 429.5 410 51.2
SMO196G0007 Selaginella moellendorffii HOM05D002536 ORTHO05D006290 1.5e-106 390.6 401 51.4
TAR371G0457 Trochodendron aralioides HOM05D002536 ORTHO05D006290 1.3e-105 387.5 411 48.4
Manes.01G115300 Manihot esculenta HOM05D002536 ORTHO05D006290 2.2e-105 386.7 404 49.5
HanXRQChr11g0325221 Helianthus annuus HOM05D002536 ORTHO05D006290 3.7e-105 386.0 401 49.6
MD09G1261000 Malus domestica HOM05D002536 ORTHO05D006290 4.9e-105 385.6 400 49.2
Prupe.3G158200 Prunus persica HOM05D002536 ORTHO05D006290 1.4e-104 384.0 400 48.5
RcHm_v2.0_Chr3g0492101 Rosa chinensis HOM05D002536 ORTHO05D006290 5.4e-104 382.1 400 49.0
CiPaw.04G045800 Carya illinoinensis HOM05D002536 ORTHO05D006290 1.6e-103 380.6 404 49.5
Ciclev10011939m.g Citrus clementina HOM05D002536 ORTHO05D006290 2.0e-103 380.2 394 49.5
Aqoxy3G04016 Aquilegia oxysepala HOM05D002536 ORTHO05D006290 4.6e-103 379.0 401 48.4
COL.COLO4_15704 Corchorus olitorius HOM05D002536 ORTHO05D006290 1.0e-102 377.9 401 48.6
Gohir.D08G062400 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.0e-102 377.9 401 47.9
Gorai.004G064600 Gossypium raimondii HOM05D002536 ORTHO05D006290 1.3e-102 377.5 401 47.9
Gohir.A08G052800 Gossypium hirsutum HOM05D002536 ORTHO05D006290 8.6e-102 374.8 401 47.9
FvH4_1g30040 Fragaria vesca HOM05D002536 ORTHO05D006290 1.1e-101 374.4 398 47.7
TWI74G1499 Tripterygium wilfordii HOM05D002536 ORTHO05D006290 3.3e-101 372.9 404 49.3
Cfa007855 Carpinus fangiana HOM05D002536 ORTHO05D006290 7.3e-101 371.7 392 49.2
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 7.3e-101 371.7 395 48.9
THA.LOC104805600 Tarenaya hassleriana HOM05D002536 ORTHO05D006290 1.2e-100 370.9 394 47.0
CAN.G625.81 Capsicum annuum HOM05D002536 ORTHO05D006290 2.1e-100 370.2 402 48.3
Migut.L00470 Erythranthe guttata HOM05D002536 ORTHO05D006290 2.1e-100 370.2 402 48.3
Atru.chr4.1673 Acer truncatum HOM05D002536 ORTHO05D006290 3.6e-100 369.4 403 48.6
Lsat_1_v5_gn_4_154740 Lactuca sativa HOM05D002536 ORTHO05D006290 3.6e-100 369.4 399 48.9
Thecc.04G122200 Theobroma cacao HOM05D002536 ORTHO05D006290 2.3e-99 366.7 404 46.5
Dinv19005 Davidia involucrata HOM05D002536 ORTHO05D006290 3.1e-99 366.3 396 48.0
GSVIVG01030877001 Vitis vinifera HOM05D002536 ORTHO05D006290 5.2e-99 365.5 403 47.6
Lalb_Chr04g0251281 Lupinus albus HOM05D002536 ORTHO05D006290 8.9e-99 364.8 392 46.9
Medtr5g079770 Medicago truncatula HOM05D002536 ORTHO05D006290 8.9e-99 364.8 397 48.4
Oeu047421.1 Olea europaea HOM05D002536 ORTHO05D006290 1.2e-98 364.4 403 46.7
BraA07t30972Z Brassica rapa HOM05D002536 ORTHO05D006290 1.5e-98 364.0 394 47.5
BcaB03g15263 Brassica carinata HOM05D002536 ORTHO05D006290 2.0e-98 363.6 394 47.5
A07p33460 Brassica napus HOM05D002536 ORTHO05D006290 2.6e-98 363.2 394 47.2
Duzib211G0581 Durio zibethinus HOM05D002536 ORTHO05D006290 3.4e-98 362.8 401 47.1
Actinidia15923 Actinidia chinensis HOM05D002536 ORTHO05D006290 7.5e-98 361.7 400 47.0
LjContig00141g0005291 Lotus japonicus HOM05D002536 ORTHO05D006290 1.7e-97 360.5 397 46.9
Psat2g045240 Pisum sativum HOM05D002536 ORTHO05D006290 1.7e-97 360.5 397 48.6
CsaV3_1G043810 Cucumis sativus L. HOM05D002536 ORTHO05D006290 2.2e-97 360.1 401 47.1
Thhalv10018669m.g Eutrema salsugineum HOM05D002536 ORTHO05D006290 2.9e-97 359.8 394 45.9
PSO017G6098 Papaver somniferum HOM05D002536 ORTHO05D006290 2.9e-97 359.8 404 47.3
PGSC0003DMG400030643 Solanum tuberosum HOM05D002536 ORTHO05D006290 2.9e-97 359.8 397 47.4
VMungo0647G1217 Vigna mungo HOM05D002536 ORTHO05D006290 2.9e-97 359.8 405 47.2
Os04g0132300 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D006290 3.7e-97 359.4 403 46.2
Ca_05868_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 4.9e-97 359.0 387 48.8
Nn3g18196 Nelumbo nucifera HOM05D002536 ORTHO05D006290 4.9e-97 359.0 401 48.1
Sopen02g035950 Solanum pennellii HOM05D002536 ORTHO05D006290 4.9e-97 359.0 402 47.0
Ah.10g037990 Amaranthus hybridus HOM05D002536 ORTHO05D006290 8.3e-97 358.2 397 47.9
Carub.0002s1253 Capsella rubella HOM05D002536 ORTHO05D006290 8.3e-97 358.2 394 47.0
BcaC08g46049 Brassica carinata HOM05D002536 ORTHO05D006290 1.9e-96 357.1 405 45.4
Sed0021694 Sechium edule HOM05D002536 ORTHO05D006290 1.9e-96 357.1 400 46.8
AT1G66510 Arabidopsis thaliana HOM05D002536 ORTHO05D006290 2.4e-96 356.7 394 45.9
Eucgr.F02817 Eucalyptus grandis HOM05D002536 ORTHO05D006290 2.4e-96 356.7 402 47.0
CARHR058490 Cardamine hirsuta HOM05D002536 ORTHO05D006290 3.2e-96 356.3 394 45.9
FAN19G0538 Fragaria x ananassa HOM05D002536 ORTHO05D006290 5.4e-96 355.5 432 43.8
PGR004G1192 Punica granatum HOM05D002536 ORTHO05D006290 5.4e-96 355.5 402 45.0
Phvul.008G233500 Phaseolus vulgaris HOM05D002536 ORTHO05D006290 9.2e-96 354.8 402 47.3
Sp5g21560 Schrenkiella parvula HOM05D002536 ORTHO05D006290 2.0e-95 353.6 394 45.7
Hund13689 Selenicereus undatus HOM05D002536 ORTHO05D006290 3.5e-95 352.8 403 46.2
CANSAT78G2192 Cannabis sativa HOM05D002536 ORTHO05D006290 7.8e-95 351.7 402 45.3
ECA232G3521 Erigeron canadensis HOM05D002536 ORTHO05D006290 1.3e-94 350.9 408 46.6
C06p39850 Brassica napus HOM05D002536 ORTHO05D006290 1.7e-94 350.5 405 44.7
FAN28G1150 Fragaria x ananassa HOM05D002536 ORTHO05D006290 1.7e-94 350.5 433 43.2
Glyma.02G247400 Glycine max HOM05D002536 ORTHO05D006290 3.9e-94 349.4 397 46.9
SGA_v2.0_scaffold329G48866 Striga asiatica HOM05D002536 ORTHO05D006290 5.0e-94 349.0 408 45.3
arahy.Tifrunner.gnm1.ann1.DT5JRU Arachis hypogaea HOM05D002536 ORTHO05D006290 1.1e-93 347.8 415 45.8
EL10Ac2g04489 Beta vulgaris HOM05D002536 ORTHO05D006290 1.1e-93 347.8 397 45.8
BolC6t39073H Brassica oleracea HOM05D002536 ORTHO05D006290 1.1e-93 347.8 394 45.2
QL11p004402 Quercus lobata HOM05D002536 ORTHO05D006290 1.1e-93 347.8 461 42.5
Sabra17G0102100 Salix brachista HOM05D002536 ORTHO05D006290 1.5e-93 347.4 404 46.3
arahy.Tifrunner.gnm1.ann1.3WSI1D Arachis hypogaea HOM05D002536 ORTHO05D006290 3.3e-93 346.3 421 45.1
AL2G23020 Arabidopsis lyrata HOM05D002536 ORTHO05D006290 4.3e-93 345.9 394 44.7
Potri.017G123900 Populus trichocarpa HOM05D002536 ORTHO05D006290 9.5e-93 344.7 358 50.6
Cc07_g08220 Coffea canephora HOM05D002536 ORTHO05D006290 3.6e-92 342.8 409 44.7
Rhsim10G0079100 Rhododendron simsii HOM05D002536 ORTHO05D006290 8.1e-92 341.7 401 45.6
MELO3C020300.2 Cucumis melo HOM05D002536 ORTHO05D006290 6.8e-91 338.6 400 45.5
DCAR_022460 Daucus carota HOM05D002536 ORTHO05D006290 6.8e-91 338.6 398 44.2
Nitab4.5_0004399g0050 Nicotiana tabacum HOM05D002536 ORTHO05D006290 9.8e-90 334.7 420 43.8
Lalb_Chr04g0249391 Lupinus albus HOM05D002536 ORTHO05D006290 1.3e-89 334.3 365 46.6
Nitab4.5_0002248g0030 Nicotiana tabacum HOM05D002536 ORTHO05D006290 1.3e-89 334.3 400 45.2
Sabra17G0104800 Salix brachista HOM05D002536 ORTHO05D006290 4.9e-89 332.4 477 40.0
Aa31LG2G3150 Aethionema arabicum HOM05D002536 ORTHO05D006290 6.4e-89 332.0 395 44.8
Sc11g0008590 Simmondsia chinensis HOM05D002536 ORTHO05D006290 2.4e-88 330.1 336 49.4
AagrBONN_evm.TU.Sc2ySwM_368.3391 Anthoceros agrestis HOM05D002536 ORTHO05D006290 7.8e-87 325.1 370 45.4
Glyma.14G068800 Glycine max HOM05D002536 ORTHO05D006290 3.9e-86 322.8 365 47.4
Zm00001eb088880 Zea mays HOM05D002536 ORTHO05D006290 3.9e-86 322.8 361 46.8
CDE04G0829 Ceratophyllum demersum HOM05D002536 ORTHO05D006290 3.3e-85 319.7 398 42.7
CBR_g28641 Chara braunii HOM05D002536 ORTHO05D006290 2.8e-84 316.6 485 38.4
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 9.2e-80 301.6 392 43.9
vmacro05501 Vaccinium macrocarpon HOM05D002536 ORTHO05D006290 1.2e-79 301.2 520 36.7
Mapoly0209s0005 Marchantia polymorpha HOM05D002536 ORTHO05D006290 5.1e-78 295.8 421 38.7
Solyc02g091330.4 Solanum lycopersicum HOM05D002536 ORTHO05D006290 8.6e-78 295.0 294 51.4
AUR62023246 Chenopodium quinoa HOM05D002536 ORTHO05D006290 1.6e-76 290.8 391 41.4
Peaxi162Scf00803g00527 Petunia axillaris HOM05D002536 ORTHO05D006290 8.1e-76 288.5 283 53.7
Lj4A178G42 Lonicera japonica HOM05D002536 ORTHO05D006290 4.0e-75 286.2 453 39.1
unitig_32.g11881 Utricularia gibba HOM05D002536 ORTHO05D006290 6.4e-73 278.9 405 41.0
AUR62023197 Chenopodium quinoa HOM05D002536 ORTHO05D006290 4.2e-72 276.2 283 49.8
SalBow7G0143 Salvia bowleyana HOM05D002536 ORTHO05D006290 1.3e-68 264.6 326 44.5
FAN28G0504 Fragaria x ananassa HOM05D002536 ORTHO05D006290 4.4e-66 256.1 298 44.6
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.3e-65 254.6 444 35.6
ATR0686G028 Amborella trichopoda HOM05D002536 ORTHO05D006290 1.3e-62 244.6 299 45.2
Cre05.g244750 Chlamydomonas reinhardtii HOM05D002536 ORTHO05D006290 2.5e-53 213.8 531 30.5
Ca_05898_v3 Cicer arietinum L. HOM05D002536 ORTHO05D006290 5.6e-53 212.6 255 45.9
Cpa.g.sc116.21 Carica papaya HOM05D002536 ORTHO05D006290 2.2e-49 200.7 232 44.4
TPR.G3505 Trifolium pratense HOM05D002536 ORTHO05D006290 3.8e-49 199.9 196 52.0
MSTRG.3529 Avicennia marina HOM05D002536 ORTHO05D006290 1.9e-45 187.6 222 45.9
QL11p004257 Quercus lobata HOM05D002536 ORTHO05D006290 6.3e-44 182.6 204 47.5
Cpa.g.sc116.20 Carica papaya HOM05D002536 ORTHO05D006290 3.7e-28 130.2 135 48.9
PRCOL_00001496 Prasinoderma coloniale HOM05D002536 ORTHO05D006290 1.4e-22 111.7 343 28.0
QL11p004418 Quercus lobata HOM05D002536 ORTHO05D006290 2.3e-22 110.9 145 43.4
TPR.G18743 Trifolium pratense HOM05D002536 ORTHO05D006290 3.3e-21 107.1 181 38.1
TPR.G39323 Trifolium pratense HOM05D002536 ORTHO05D006290 1.4e-19 101.7 80 60.0
SEGI_34356 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 5.3e-19 99.8 80 55.0
VMungo0464G1199 Vigna mungo HOM05D002536 ORTHO05D006290 2.0e-18 97.8 79 57.0
TPR.G3492 Trifolium pratense HOM05D002536 ORTHO05D006290 1.7e-17 94.7 94 48.9
TPR.G3477 Trifolium pratense HOM05D002536 ORTHO05D006290 6.7e-14 82.8 75 60.0
FAN28G2473 Fragaria x ananassa HOM05D002536 ORTHO05D006290 2.0e-13 81.3 61 57.4
Gohir.D02G177580 Gossypium hirsutum HOM05D002536 ORTHO05D006290 7.5e-13 79.3 115 40.0
TPR.G4379 Trifolium pratense HOM05D002536 ORTHO05D006290 4.8e-12 76.6 120 34.2
Gohir.A07G193350 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.3e-12 76.3 115 39.1
Gohir.A08G229450 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.3e-12 76.3 115 39.1
Gohir.A12G000900 Gossypium hirsutum HOM05D002536 ORTHO05D006290 6.3e-12 76.3 115 39.1
Gohir.A10G143300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.1e-11 75.5 115 39.1
Gohir.A09G155300 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.8e-11 74.7 115 38.3
Gohir.D04G118901 Gossypium hirsutum HOM05D002536 ORTHO05D006290 1.8e-11 74.7 141 38.3
QL11p004025 Quercus lobata HOM05D002536 ORTHO05D006290 4.1e-11 73.6 112 37.5
Gorai.004G103000 Gossypium raimondii HOM05D002536 ORTHO05D006290 5.3e-11 73.2 148 36.5
TPR.G22657 Trifolium pratense HOM05D002536 ORTHO05D006290 5.3e-11 73.2 52 67.3
TPR.G5666 Trifolium pratense HOM05D002536 ORTHO05D006290 1.6e-10 71.6 65 58.5
Gohir.D02G126132 Gossypium hirsutum HOM05D002536 ORTHO05D006290 5.9e-10 69.7 148 35.1
TPR.G15212 Trifolium pratense HOM05D002536 ORTHO05D006290 3.8e-09 67.0 72 44.4
Gohir.D06G126066 Gossypium hirsutum HOM05D002536 ORTHO05D006290 9.4e-08 62.4 72 43.1
Gorai.010G146900 Gossypium raimondii HOM05D002536 ORTHO05D006290 9.4e-08 62.4 71 43.7
SEGI_13453 Sequoiadendron giganteum HOM05D002536 ORTHO05D006290 3.6e-07 60.5 41 65.9


User provided reference genes

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