Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 0.0e+00 1615.1 814 100.0
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 5.4e-289 997.7 815 64.5
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 2.5e-217 759.6 860 51.7
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 2.0e-190 670.2 804 47.3
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 5.2e-183 645.6 727 47.9
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 4.4e-182 642.5 734 47.4
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 4.1e-180 636.0 749 47.3
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 7.0e-180 635.2 734 46.9
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 7.0e-180 635.2 733 45.7
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 2.2e-178 630.2 760 46.6
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 5.0e-178 629.0 749 46.2
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 1.1e-177 627.9 728 46.7
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 1.9e-177 627.1 728 46.7
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.9e-177 627.1 788 46.2
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 3.2e-177 626.3 781 44.8
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 5.5e-177 625.5 786 45.5
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 1.2e-176 624.4 736 47.3
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.6e-176 624.0 743 46.3
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 4.7e-176 622.5 733 46.0
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 4.7e-176 622.5 720 47.8
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 1.0e-175 621.3 732 46.7
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 4.0e-175 619.4 770 45.3
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 2.0e-174 617.1 774 44.7
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 2.0e-174 617.1 783 45.2
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 2.6e-174 616.7 760 45.5
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 7.5e-174 615.1 718 47.5
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 9.8e-174 614.8 770 44.5
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 1.3e-173 614.4 806 43.9
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.3e-173 614.4 781 44.4
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 1.3e-173 614.4 721 45.9
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.7e-173 614.0 760 45.9
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 2.2e-173 613.6 770 44.8
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 2.8e-173 613.2 788 44.5
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 3.7e-173 612.8 770 45.2
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 6.3e-173 612.1 784 44.3
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 8.3e-173 611.7 770 44.2
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 1.1e-172 611.3 793 45.6
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 1.8e-172 610.5 782 43.6
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.4e-172 610.1 734 45.8
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 4.1e-172 609.4 737 45.5
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 7.0e-172 608.6 770 44.5
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 9.1e-172 608.2 734 45.6
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 1.2e-171 607.8 787 43.7
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 1.2e-171 607.8 762 45.0
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 1.2e-171 607.8 733 47.1
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 3.5e-171 606.3 780 43.8
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 4.5e-171 605.9 766 45.2
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 5.9e-171 605.5 785 43.8
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 5.9e-171 605.5 735 45.4
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 5.9e-171 605.5 783 44.1
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 7.7e-171 605.1 778 44.9
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 7.7e-171 605.1 789 44.7
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 1.0e-170 604.7 734 45.8
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.0e-170 604.7 734 45.8
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 1.0e-170 604.7 778 43.8
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.3e-170 604.4 744 46.0
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 2.2e-170 603.6 774 44.7
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 1.9e-169 600.5 751 44.5
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.5e-169 600.1 783 43.0
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 2.5e-169 600.1 768 45.2
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 3.2e-169 599.7 744 45.0
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.2e-169 599.7 734 45.4
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 4.2e-169 599.4 733 45.4
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 7.2e-169 598.6 744 45.0
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 7.2e-169 598.6 814 42.3
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 9.5e-169 598.2 769 44.5
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 1.2e-168 597.8 770 43.5
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 2.1e-168 597.0 751 45.1
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 2.1e-168 597.0 751 44.5
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 3.6e-168 596.3 751 45.1
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 4.7e-168 595.9 719 46.0
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 4.7e-168 595.9 731 44.7
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 6.1e-168 595.5 715 45.5
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 8.0e-168 595.1 768 44.7
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 8.0e-168 595.1 731 45.0
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 1.4e-167 594.3 715 45.5
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 1.4e-167 594.3 741 44.9
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 1.4e-167 594.3 714 45.2
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 2.3e-167 593.6 783 42.8
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 2.3e-167 593.6 748 44.8
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 3.0e-167 593.2 727 45.8
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 3.0e-167 593.2 745 43.9
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 4.0e-167 592.8 743 45.0
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 4.0e-167 592.8 772 43.3
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 5.2e-167 592.4 759 44.5
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 6.8e-167 592.0 720 45.8
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 1.2e-166 591.3 717 45.6
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.5e-166 590.9 720 46.0
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.5e-166 590.9 721 45.8
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 4.4e-166 589.3 777 43.0
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 4.4e-166 589.3 734 44.8
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 4.4e-166 589.3 785 42.5
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 7.5e-166 588.6 794 42.7
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 7.5e-166 588.6 770 43.2
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 7.5e-166 588.6 770 43.2
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 9.8e-166 588.2 772 43.4
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 2.2e-165 587.0 785 42.8
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 4.9e-165 585.9 746 44.4
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 1.1e-164 584.7 767 45.2
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.4e-164 584.3 740 44.6
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 3.1e-164 583.2 720 45.4
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 3.1e-164 583.2 800 42.5
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 4.1e-164 582.8 738 44.2
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 4.1e-164 582.8 733 44.1
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 4.1e-164 582.8 726 44.1
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 5.4e-164 582.4 720 45.4
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 9.2e-164 581.6 773 43.6
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.2e-163 581.3 760 43.8
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 1.2e-163 581.3 732 44.0
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 2.7e-163 580.1 755 43.0
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 4.5e-163 579.3 747 44.3
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.0e-162 578.2 749 43.1
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.3e-162 577.0 717 44.4
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 6.6e-162 575.5 766 43.3
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 8.6e-162 575.1 763 43.6
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 7.3e-161 572.0 785 42.9
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.5e-161 571.6 790 42.8
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.6e-160 570.9 770 42.6
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 4.7e-160 569.3 750 43.9
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 4.0e-159 566.2 766 42.7
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 5.2e-159 565.8 775 42.5
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 8.9e-159 565.1 716 44.8
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.5e-158 564.3 785 41.3
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 4.4e-158 562.8 716 44.7
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 2.9e-157 560.1 732 44.3
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 3.7e-157 559.7 576 53.5
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 1.8e-156 557.4 776 40.9
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 5.4e-156 555.8 735 43.1
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 2.0e-155 553.9 804 41.0
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 2.5e-153 547.0 747 43.5
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 9.5e-153 545.0 733 43.7
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 5.2e-151 539.3 728 42.3
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 8.3e-149 531.9 766 41.8
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 5.6e-145 519.2 743 42.3
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.5e-142 511.1 743 40.6
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 9.9e-142 508.4 711 41.8
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 1.1e-140 505.0 756 40.5
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.4e-132 478.0 770 38.3
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 1.2e-128 464.9 863 35.9
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.4e-127 461.5 711 39.0
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 3.2e-124 450.3 680 40.7
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 3.6e-120 436.8 736 38.5
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 4.8e-120 436.4 791 35.7
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.2e-115 421.8 762 34.9
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 2.7e-115 420.6 701 38.8
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 7.9e-107 392.5 752 37.1
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 9.6e-105 385.6 432 48.4
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 2.6e-102 377.5 374 51.9
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 2.6e-102 377.5 374 51.9
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.5e-97 361.7 384 48.4
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 9.3e-92 342.4 730 31.6
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 5.3e-87 326.6 255 59.6
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.9e-84 318.2 182 75.8
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 4.1e-71 273.9 385 41.6
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.8e-64 251.1 445 36.2
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.8e-63 248.4 430 37.2
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.1e-59 235.0 768 27.7
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.0e-33 148.7 283 32.9
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 7.8e-30 136.7 65 86.2
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 3.4e-25 121.3 263 31.2
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.4e-18 99.4 50 82.0
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.8e-18 99.0 157 33.8
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.7e-16 92.4 149 39.6
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 1.7e-13 82.4 171 31.6
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 9.9e-09 66.6 39 69.2
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 9.9e-09 66.6 46 65.2
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 2.2e-08 65.5 148 31.1
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.2e-07 61.2 150 33.3


User provided reference genes

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