Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 2.7e-50 201.8 110 100.0
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 4.7e-39 164.5 109 81.7
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 1.5e-37 159.5 108 80.6
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 3.4e-37 158.3 106 82.1
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 4.4e-37 157.9 105 81.0
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 4.4e-37 157.9 108 81.5
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 4.4e-37 157.9 110 77.3
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 4.4e-37 157.9 110 77.3
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 5.8e-37 157.5 110 80.0
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 9.8e-37 156.8 106 83.0
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 9.8e-37 156.8 106 83.0
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 9.8e-37 156.8 106 83.0
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 9.8e-37 156.8 106 82.1
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 9.8e-37 156.8 106 82.1
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 9.8e-37 156.8 106 82.1
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 1.3e-36 156.4 108 81.5
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 1.7e-36 156.0 110 80.0
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 2.2e-36 155.6 106 83.0
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 2.2e-36 155.6 107 82.2
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 2.2e-36 155.6 110 80.0
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 3.7e-36 154.8 106 81.1
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 3.7e-36 154.8 109 78.9
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 6.4e-36 154.1 108 78.7
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 8.3e-36 153.7 108 78.7
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 8.3e-36 153.7 109 78.9
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 8.3e-36 153.7 106 81.1
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 8.3e-36 153.7 109 80.7
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 1.4e-35 152.9 108 80.6
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.4e-35 152.9 109 77.1
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 1.4e-35 152.9 108 78.7
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.4e-35 152.9 108 80.6
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 1.9e-35 152.5 108 77.8
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 1.9e-35 152.5 106 80.2
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 2.4e-35 152.1 109 78.9
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.4e-35 152.1 106 77.4
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 3.2e-35 151.8 108 78.7
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 3.2e-35 151.8 97 86.6
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 3.2e-35 151.8 106 80.2
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 3.2e-35 151.8 106 79.2
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 5.4e-35 151.0 108 78.7
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 5.4e-35 151.0 108 78.7
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 5.4e-35 151.0 109 79.8
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 5.4e-35 151.0 106 79.2
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 5.4e-35 151.0 105 81.0
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 5.4e-35 151.0 106 80.2
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 7.0e-35 150.6 110 76.4
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 7.0e-35 150.6 106 79.2
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 7.0e-35 150.6 108 78.7
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 7.0e-35 150.6 106 78.3
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 9.2e-35 150.2 106 78.3
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 9.2e-35 150.2 106 78.3
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 9.2e-35 150.2 97 83.5
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 9.2e-35 150.2 106 79.2
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 9.2e-35 150.2 108 79.6
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 9.2e-35 150.2 99 79.8
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 1.2e-34 149.8 106 80.2
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 1.6e-34 149.4 106 79.2
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.6e-34 149.4 109 76.1
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.6e-34 149.4 109 77.1
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 1.6e-34 149.4 99 81.8
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 1.6e-34 149.4 108 77.8
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 1.6e-34 149.4 108 77.8
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 1.6e-34 149.4 109 77.1
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 2.1e-34 149.1 99 81.8
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 2.1e-34 149.1 102 77.5
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 2.7e-34 148.7 108 76.9
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 2.7e-34 148.7 109 78.0
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 2.7e-34 148.7 108 77.8
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 2.7e-34 148.7 97 82.5
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 2.7e-34 148.7 97 82.5
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 2.7e-34 148.7 107 78.5
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 3.5e-34 148.3 106 77.4
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 3.5e-34 148.3 97 81.4
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 3.5e-34 148.3 106 78.3
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 4.6e-34 147.9 107 76.6
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 6.0e-34 147.5 106 78.3
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 1.0e-33 146.7 106 77.4
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 1.3e-33 146.4 99 81.8
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 1.3e-33 146.4 106 77.4
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.3e-33 146.4 106 77.4
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 1.3e-33 146.4 106 77.4
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 1.3e-33 146.4 101 81.2
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 1.3e-33 146.4 97 81.4
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 1.7e-33 146.0 97 81.4
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 2.3e-33 145.6 108 76.9
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 3.9e-33 144.8 108 75.0
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 3.9e-33 144.8 97 80.4
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 5.0e-33 144.4 97 80.4
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 5.0e-33 144.4 106 77.4
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 8.6e-33 143.7 108 75.0
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 1.5e-32 142.9 106 74.5
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 2.5e-32 142.1 97 78.4
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 3.3e-32 141.7 97 78.4
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 4.3e-32 141.4 109 73.4
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 4.3e-32 141.4 107 73.8
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 1.2e-31 139.8 106 73.6
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 1.2e-31 139.8 97 78.4
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 1.6e-31 139.4 106 73.6
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 2.8e-31 138.7 106 72.6
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 2.8e-31 138.7 124 68.5
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 2.8e-31 138.7 130 65.4
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 3.6e-31 138.3 97 77.3
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 4.7e-31 137.9 110 67.3
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 8.1e-31 137.1 114 69.3
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 8.1e-31 137.1 99 79.8
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 1.1e-30 136.7 107 71.0
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 1.1e-30 136.7 107 71.0
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 1.1e-30 136.7 107 71.0
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 1.1e-30 136.7 107 71.0
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 1.1e-30 136.7 97 76.3
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 1.8e-30 136.0 110 69.1
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 4.0e-30 134.8 97 75.3
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 4.0e-30 134.8 110 68.2
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 4.0e-30 134.8 102 72.5
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 5.2e-30 134.4 96 78.1
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 8.9e-30 133.7 98 76.5
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 8.9e-30 133.7 109 70.6
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 8.9e-30 133.7 106 73.6
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 1.5e-29 132.9 107 69.2
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 1.5e-29 132.9 106 73.6
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 2.6e-29 132.1 97 77.3
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 6.4e-28 127.5 106 69.8
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 6.4e-28 127.5 106 69.8
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.4e-27 126.3 108 67.6
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 4.1e-27 124.8 106 68.9
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 9.2e-27 123.6 107 69.2
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 9.2e-27 123.6 108 68.5
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 9.2e-27 123.6 97 75.3
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 6.0e-26 120.9 175 48.0
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.9e-24 115.9 108 65.7
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 7.3e-24 114.0 81 80.2
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 2.6e-21 105.5 98 62.2
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 9.9e-21 103.6 67 80.6
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 3.2e-19 98.6 107 56.1
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 6.2e-15 84.3 49 87.8
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 1.8e-14 82.8 50 86.0
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 2.4e-14 82.4 61 77.0
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.5e-13 79.7 58 79.3
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 2.0e-13 79.3 61 72.1
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 7.6e-13 77.4 62 69.4
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 7.1e-11 70.9 90 53.3
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.0e-09 67.0 58 67.2
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 1.0e-09 67.0 117 36.8
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 1.0e-09 67.0 64 62.5
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 3.0e-09 65.5 48 77.1
MCO05G089 Micromonas commoda HOM05D005046 ORTHO05D006194 3.6e-07 58.5 55 52.7


User provided reference genes

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