Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c15_10910 Physcomitrium patens HOM05D000434 ORTHO05D005992 2.7e-213 745.0 351 100.0
Pp3c23_9280 Physcomitrium patens HOM05D000434 ORTHO05D005992 8.6e-143 510.8 313 73.8
SEGI_02641 Sequoiadendron giganteum HOM05D000434 ORTHO05D005992 2.2e-122 443.0 342 59.9
DCAR_007452 Daucus carota HOM05D000434 ORTHO05D007220 3.5e-120 435.6 305 63.0
CiPaw.12G032200 Carya illinoinensis HOM05D000434 ORTHO05D005992 1.0e-119 434.1 317 61.5
CSS0032276 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.7e-119 433.3 312 61.2
Duzib068G0672 Durio zibethinus HOM05D000434 ORTHO05D005992 6.6e-119 431.4 308 61.7
ATR0122G026 Amborella trichopoda HOM05D000434 ORTHO05D005992 1.9e-118 429.9 320 58.4
ECA232G2851 Erigeron canadensis HOM05D000434 ORTHO05D005992 2.5e-118 429.5 306 61.4
Lj5P131T21 Lonicera japonica HOM05D000434 ORTHO05D005992 2.5e-118 429.5 312 59.0
FvH4_5g06420 Fragaria vesca HOM05D000434 ORTHO05D005992 9.5e-118 427.6 306 62.4
FAN18G2656 Fragaria x ananassa HOM05D000434 ORTHO05D005992 9.5e-118 427.6 306 62.4
COL.COLO4_21936 Corchorus olitorius HOM05D000434 ORTHO05D005992 1.2e-117 427.2 305 61.3
FAN08G0399 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.1e-117 426.4 306 62.7
FAN04G1602 Fragaria x ananassa HOM05D000434 ORTHO05D005992 2.8e-117 426.0 306 62.4
MD14G1170200 Malus domestica HOM05D000434 ORTHO05D005992 4.7e-117 425.2 307 62.9
GSVIVG01007623001 Vitis vinifera HOM05D000434 ORTHO05D005992 4.7e-117 425.2 306 61.4
Prupe.5G164400 Prunus persica HOM05D000434 ORTHO05D005992 1.1e-116 424.1 306 62.7
Haze_07598 Corylus avellana HOM05D000434 ORTHO05D005992 1.8e-116 423.3 311 59.8
Rhsim12G0168500 Rhododendron simsii HOM05D000434 ORTHO05D005992 2.3e-116 422.9 306 61.1
Cpa.g.sc968.1 Carica papaya HOM05D000434 ORTHO05D005992 3.1e-116 422.5 318 57.9
Cfa019231 Carpinus fangiana HOM05D000434 ORTHO05D005992 4.0e-116 422.2 311 59.8
Thecc.03G116300 Theobroma cacao HOM05D000434 ORTHO05D005992 4.0e-116 422.2 308 60.7
Ciclev10021198m.g Citrus clementina HOM05D000434 ORTHO05D005992 8.9e-116 421.0 306 60.5
TAR622G0355 Trochodendron aralioides HOM05D000434 ORTHO05D005992 8.9e-116 421.0 306 60.5
Eucgr.B00212 Eucalyptus grandis HOM05D000434 ORTHO05D005992 1.2e-115 420.6 306 60.5
Glyma.06G176400 Glycine max HOM05D000434 ORTHO05D005992 3.4e-115 419.1 306 59.5
Gohir.A03G074900 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.4e-115 419.1 302 61.9
Phvul.009G172900 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 3.4e-115 419.1 310 59.4
RcHm_v2.0_Chr7g0192361 Rosa chinensis HOM05D000434 ORTHO05D005992 4.4e-115 418.7 306 61.8
Sed0014341 Sechium edule HOM05D000434 ORTHO05D005992 7.6e-115 417.9 306 60.5
SalBow5G5274 Salvia bowleyana HOM05D000434 ORTHO05D005992 9.9e-115 417.5 313 60.7
Nitab4.5_0002522g0080 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.3e-114 417.2 306 60.8
Nitab4.5_0008037g0030 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.3e-114 417.2 306 60.8
PGR083G1106 Punica granatum HOM05D000434 ORTHO05D005992 1.3e-114 417.2 306 61.1
Glyma.06G176500 Glycine max HOM05D000434 ORTHO05D005992 1.7e-114 416.8 306 60.1
ClCG03G003070 Citrullus lanatus HOM05D000434 ORTHO05D005992 2.2e-114 416.4 306 60.1
QL10p006660 Quercus lobata HOM05D000434 ORTHO05D005992 2.9e-114 416.0 306 60.5
CBR_g48132 Chara braunii HOM05D000434 ORTHO05D005992 3.7e-114 415.6 319 58.0
COL.COLO4_20637 Corchorus olitorius HOM05D000434 ORTHO05D005992 3.7e-114 415.6 305 60.3
SalBow5G1452 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.9e-114 415.2 312 60.3
MBI06_g22722_MAGBIO Magnolia biondii HOM05D000434 ORTHO05D005992 8.3e-114 414.5 312 59.0
EL10Ac7g17989 Beta vulgaris HOM05D000434 ORTHO05D005992 1.1e-113 414.1 312 59.9
MELO3C002306.2 Cucumis melo HOM05D000434 ORTHO05D005992 1.1e-113 414.1 329 57.8
CsaV3_1G008920 Cucumis sativus L. HOM05D000434 ORTHO05D005992 1.1e-113 414.1 306 59.5
HanXRQChr09g0272611 Helianthus annuus HOM05D000434 ORTHO05D005992 1.4e-113 413.7 306 60.5
Oeu036498.1 Olea europaea HOM05D000434 ORTHO05D005992 1.4e-113 413.7 306 60.5
CANSAT80G2029 Cannabis sativa HOM05D000434 ORTHO05D005992 1.9e-113 413.3 305 60.7
TWI39G0022 Tripterygium wilfordii HOM05D000434 ORTHO05D005992 1.9e-113 413.3 306 60.1
Phvul.009G172700 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 2.4e-113 412.9 306 58.5
Sc04g0001380 Simmondsia chinensis HOM05D000434 ORTHO05D005992 4.1e-113 412.1 306 60.8
MSTRG.4348 Avicennia marina HOM05D000434 ORTHO05D005992 5.4e-113 411.8 312 58.0
AUR62022129 Chenopodium quinoa HOM05D000434 ORTHO05D005992 5.4e-113 411.8 312 58.0
VMungo1309G2156 Vigna mungo HOM05D000434 ORTHO05D005992 5.4e-113 411.8 306 59.2
VMungo1309G2813 Vigna mungo HOM05D000434 ORTHO05D005992 5.4e-113 411.8 309 58.3
Peaxi162Scf00089g01220 Petunia axillaris HOM05D000434 ORTHO05D005992 7.1e-113 411.4 306 61.1
CAN.G126.46 Capsicum annuum HOM05D000434 ORTHO05D005992 9.2e-113 411.0 306 59.8
Phvul.009G172800 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 9.2e-113 411.0 306 59.5
C01p20050 Brassica napus HOM05D000434 ORTHO05D001445 1.2e-112 410.6 321 56.4
Nn4g22577 Nelumbo nucifera HOM05D000434 ORTHO05D005992 1.2e-112 410.6 306 58.8
Zm00001eb306980 Zea mays HOM05D000434 ORTHO05D005992 1.2e-112 410.6 320 57.8
Psat4g061720 Pisum sativum HOM05D000434 ORTHO05D005992 1.6e-112 410.2 321 56.7
Gohir.A12G185500 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.1e-112 409.8 311 58.2
Lalb_Chr08g0236831 Lupinus albus HOM05D000434 ORTHO05D005992 2.1e-112 409.8 305 58.0
SGA_v2.0_scaffold90G27827 Striga asiatica HOM05D000434 ORTHO05D005992 2.1e-112 409.8 314 58.0
THA.LOC104824991 Tarenaya hassleriana HOM05D000434 ORTHO05D005992 2.1e-112 409.8 311 58.5
A01p16060 Brassica napus HOM05D000434 ORTHO05D005992 2.7e-112 409.5 315 57.1
BraA01t01541Z Brassica rapa HOM05D000434 ORTHO05D001445 2.7e-112 409.5 315 57.1
CDE09G0062 Ceratophyllum demersum HOM05D000434 ORTHO05D005992 2.7e-112 409.5 307 58.6
Glyma.05G042300 Glycine max HOM05D000434 ORTHO05D005992 2.7e-112 409.5 307 57.7
TPR.G37491 Trifolium pratense HOM05D000434 ORTHO05D007220 3.5e-112 409.1 307 57.7
AUR62001199 Chenopodium quinoa HOM05D000434 ORTHO05D005992 6.0e-112 408.3 312 58.0
CANSAT80G1313 Cannabis sativa HOM05D000434 ORTHO05D005992 7.8e-112 407.9 305 59.7
Glyma.17G125000 Glycine max HOM05D000434 ORTHO05D005992 7.8e-112 407.9 307 58.3
BolC1t01932H Brassica oleracea HOM05D000434 ORTHO05D001445 1.0e-111 407.5 321 56.4
Gorai.008G202000 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.7e-111 406.8 309 58.9
Lj4g0020673 Lotus japonicus HOM05D000434 ORTHO05D005992 1.7e-111 406.8 308 58.4
Thhalv10025788m.g Eutrema salsugineum HOM05D000434 ORTHO05D005992 2.3e-111 406.4 311 57.6
Cc04_g11350 Coffea canephora HOM05D000434 ORTHO05D005992 3.0e-111 406.0 312 58.7
HPP92_004599 Vanilla planifolia HOM05D000434 ORTHO05D005992 3.0e-111 406.0 313 58.8
Sopen03g031180 Solanum pennellii HOM05D000434 ORTHO05D005992 3.9e-111 405.6 306 58.8
LjContig00127g0004723 Lotus japonicus HOM05D000434 ORTHO05D005992 8.6e-111 404.4 306 59.2
VMungo1309G2109 Vigna mungo HOM05D000434 ORTHO05D005992 1.1e-110 404.1 309 57.9
Mapoly0153s0032 Marchantia polymorpha HOM05D000434 ORTHO05D005992 1.5e-110 403.7 338 56.8
VMungo1215G0774 Vigna mungo HOM05D000434 ORTHO05D005992 1.9e-110 403.3 313 57.5
AT4G24730 Arabidopsis thaliana HOM05D000434 ORTHO05D005992 2.5e-110 402.9 311 57.2
Solyc03g112080.1 Solanum lycopersicum HOM05D000434 ORTHO05D005992 2.5e-110 402.9 306 58.5
PGSC0003DMG400018193 Solanum tuberosum HOM05D000434 ORTHO05D005992 2.5e-110 402.9 306 58.5
Ah.08g218690 Amaranthus hybridus HOM05D000434 ORTHO05D007220 3.3e-110 402.5 312 58.0
SalBow5G0725 Salvia bowleyana HOM05D000434 ORTHO05D005992 3.3e-110 402.5 312 57.4
Aa31LG7G11140 Aethionema arabicum HOM05D000434 ORTHO05D005992 5.6e-110 401.7 311 57.6
CARHR232100 Cardamine hirsuta HOM05D000434 ORTHO05D005992 5.6e-110 401.7 311 57.6
Sp7g22710 Schrenkiella parvula HOM05D000434 ORTHO05D005992 5.6e-110 401.7 311 57.6
Ca_19422_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 9.6e-110 401.0 312 57.1
SalBow5G4047 Salvia bowleyana HOM05D000434 ORTHO05D005992 9.6e-110 401.0 296 61.1
Aqoxy5G03716 Aquilegia oxysepala HOM05D000434 ORTHO05D005992 1.2e-109 400.6 306 57.2
AL7G28460 Arabidopsis lyrata HOM05D000434 ORTHO05D005992 1.6e-109 400.2 311 57.6
Migut.D02023 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.8e-109 399.4 310 59.7
Carub.0007s1633 Capsella rubella HOM05D000434 ORTHO05D005992 3.6e-109 399.1 315 56.2
Os07g0688000 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 3.6e-109 399.1 320 55.9
Phvul.003G206000 Phaseolus vulgaris HOM05D000434 ORTHO05D005992 4.7e-109 398.7 301 58.1
Migut.O00171 Erythranthe guttata HOM05D000434 ORTHO05D005992 8.1e-109 397.9 312 56.4
Peaxi162Scf00801g00033 Petunia axillaris HOM05D000434 ORTHO05D005992 1.4e-108 397.1 312 56.7
Nitab4.5_0000025g0390 Nicotiana tabacum HOM05D000434 ORTHO05D005992 1.8e-108 396.7 310 56.5
Gohir.D12G188284 Gossypium hirsutum HOM05D000434 ORTHO05D005992 3.1e-108 396.0 301 58.5
Medtr4g104690 Medicago truncatula HOM05D000434 ORTHO05D005992 6.8e-108 394.8 307 56.7
arahy.Tifrunner.gnm1.ann1.D0ANT3 Arachis hypogaea HOM05D000434 ORTHO05D005992 8.9e-108 394.4 306 57.2
arahy.Tifrunner.gnm1.ann1.Z1M7DP Arachis hypogaea HOM05D000434 ORTHO05D005992 1.2e-107 394.0 306 56.9
SGA_v2.0_scaffold114G31805 Striga asiatica HOM05D000434 ORTHO05D005992 1.2e-107 394.0 312 56.7
Nitab4.5_0001243g0040 Nicotiana tabacum HOM05D000434 ORTHO05D005992 2.6e-107 392.9 310 56.8
Zm00001eb176220 Zea mays HOM05D000434 ORTHO05D005992 2.6e-107 392.9 315 55.2
Ca_16123_v3 Cicer arietinum L. HOM05D000434 ORTHO05D005992 3.4e-107 392.5 307 57.3
Oeu044591.1 Olea europaea HOM05D000434 ORTHO05D005992 4.4e-107 392.1 312 56.7
Lalb_Chr07g0183021 Lupinus albus HOM05D000434 ORTHO05D005992 9.9e-107 391.0 307 55.4
Aa31LG7G11150 Aethionema arabicum HOM05D000434 ORTHO05D005992 1.3e-106 390.6 311 56.3
Lsat_1_v5_gn_4_79260 Lactuca sativa HOM05D000434 ORTHO05D005992 1.3e-106 390.6 305 56.1
Manes.06G111500 Manihot esculenta HOM05D000434 ORTHO05D005992 1.7e-106 390.2 306 57.2
Potri.012G089400 Populus trichocarpa HOM05D000434 ORTHO05D005992 2.2e-106 389.8 306 58.5
Lalb_Chr13g0297571 Lupinus albus HOM05D000434 ORTHO05D005992 1.1e-105 387.5 312 53.8
Sabra12G0064400 Salix brachista HOM05D000434 ORTHO05D005992 1.1e-105 387.5 307 57.3
Medtr3g076590 Medicago truncatula HOM05D000434 ORTHO05D005992 4.2e-105 385.6 306 56.5
Os08g0557200 Oryza sativa ssp. japonica HOM05D000434 ORTHO05D005992 5.4e-105 385.2 332 53.3
TPR.G35602 Trifolium pratense HOM05D000434 ORTHO05D005992 5.4e-105 385.2 306 56.5
BcaC09g50836 Brassica carinata HOM05D000434 ORTHO05D001445 2.1e-104 383.3 321 54.5
Gohir.D03G101700 Gossypium hirsutum HOM05D000434 ORTHO05D005992 2.1e-104 383.3 276 62.0
Gorai.003G107100 Gossypium raimondii HOM05D000434 ORTHO05D005992 2.1e-104 383.3 276 61.6
HanXRQChr05g0154811 Helianthus annuus HOM05D000434 ORTHO05D005992 3.5e-104 382.5 310 57.1
Psat5g116720 Pisum sativum HOM05D000434 ORTHO05D005992 3.3e-102 375.9 306 54.9
HanXRQChr02g0032551 Helianthus annuus HOM05D000434 ORTHO05D005992 1.1e-100 370.9 310 54.8
Atru.chr9.2595 Acer truncatum HOM05D000434 ORTHO05D005992 6.9e-100 368.2 311 54.0
unitig_22.g6297 Utricularia gibba HOM05D000434 ORTHO05D005992 1.9e-97 360.1 285 56.5
PSO754G0021 Papaver somniferum HOM05D000434 ORTHO05D005992 1.6e-96 357.1 273 57.9
SMO361G0760 Selaginella moellendorffii HOM05D000434 ORTHO05D005992 7.3e-94 348.2 309 51.5
AUR62028295 Chenopodium quinoa HOM05D000434 ORTHO05D005992 1.8e-92 343.6 305 51.8
Migut.L00359 Erythranthe guttata HOM05D000434 ORTHO05D005992 5.3e-92 342.0 288 55.6
Sed0024178 Sechium edule HOM05D000434 ORTHO05D005992 6.9e-92 341.7 318 49.7
Gohir.D12G188312 Gossypium hirsutum HOM05D000434 ORTHO05D005992 1.2e-80 304.3 309 48.2
Gorai.008G202100 Gossypium raimondii HOM05D000434 ORTHO05D005992 1.2e-80 304.3 309 48.2
Migut.L00543 Erythranthe guttata HOM05D000434 ORTHO05D005992 2.1e-80 303.5 303 50.8
SHI03475 Sapria himalayana HOM05D000434 ORTHO05D005992 2.7e-80 303.1 311 48.9
CSS0026928 Camellia sinensis var. sinensis HOM05D000434 ORTHO05D005992 1.1e-78 297.7 216 59.7
Sabra15G0108100 Salix brachista HOM05D000434 ORTHO05D005992 4.5e-75 285.8 222 57.2
ECA233G1405 Erigeron canadensis HOM05D000434 ORTHO05D005992 6.7e-63 245.4 267 45.7
SalBow5G4235 Salvia bowleyana HOM05D000434 ORTHO05D005992 5.0e-58 229.2 314 39.2
HanXRQChr09g0263851 Helianthus annuus HOM05D000434 ORTHO05D005992 1.4e-57 227.6 176 59.1
SalBow5G1355 Salvia bowleyana HOM05D000434 ORTHO05D005992 4.0e-47 193.0 260 41.9
Mapoly0043s0121 Marchantia polymorpha HOM05D000434 ORTHO05D005992 1.5e-46 191.0 310 34.5
HPP92_020252 Vanilla planifolia HOM05D000434 ORTHO05D005992 5.7e-46 189.1 123 64.2
MCO10G403 Micromonas commoda HOM05D000434 ORTHO05D005992 5.7e-38 162.5 341 30.8
Pp3c2_17660 Physcomitrium patens HOM05D000434 ORTHO05D005992 2.9e-34 150.2 102 63.7
Gohir.A12G185600 Gossypium hirsutum HOM05D000434 ORTHO05D005992 8.0e-32 142.1 110 57.3
Potri.015G085232 Populus trichocarpa HOM05D000434 ORTHO05D005992 1.0e-31 141.7 130 51.5
AagrBONN_evm.TU.Sc2ySwM_368.1237 Anthoceros agrestis HOM05D000434 ORTHO05D005992 1.2e-30 138.3 241 35.3
MCO14G418 Micromonas commoda HOM05D000434 ORTHO05D005992 5.4e-28 129.4 341 26.4
HPP92_020253 Vanilla planifolia HOM05D000434 ORTHO05D005992 7.8e-11 72.4 51 62.7


User provided reference genes

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