Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_9970 Physcomitrium patens HOM05D006197 ORTHO05D007718 3.6e-48 194.5 94 100.0
AagrBONN_evm.TU.Sc2ySwM_368.296 Anthoceros agrestis HOM05D006197 ORTHO05D007718 3.5e-19 98.2 100 59.0
CARHR170180 Cardamine hirsuta HOM05D006197 ORTHO05D007718 1.1e-17 93.2 84 53.6
BcaC07g40556 Brassica carinata HOM05D006197 ORTHO05D007718 2.5e-17 92.0 84 52.4
A09p52120 Brassica napus HOM05D006197 ORTHO05D007718 2.5e-17 92.0 84 52.4
BcaC08g45013 Brassica carinata HOM05D006197 ORTHO05D007718 4.3e-17 91.3 84 52.4
BolC6t37808H Brassica oleracea HOM05D006197 ORTHO05D007718 4.3e-17 91.3 84 52.4
C06p26450 Brassica napus HOM05D006197 ORTHO05D007718 9.7e-17 90.1 84 51.2
Aa31LG10G14080 Aethionema arabicum HOM05D006197 ORTHO05D007718 2.8e-16 88.6 86 51.2
BcaB02g07441 Brassica carinata HOM05D006197 ORTHO05D007718 3.7e-16 88.2 86 50.0
CBR_g8168 Chara braunii HOM05D006197 ORTHO05D007718 3.7e-16 88.2 58 74.1
A07p24860 Brassica napus HOM05D006197 ORTHO05D007718 4.8e-16 87.8 85 52.9
BraA07t30130Z Brassica rapa HOM05D006197 ORTHO05D007718 4.8e-16 87.8 85 52.9
AL5G41940 Arabidopsis lyrata HOM05D006197 ORTHO05D007718 6.3e-16 87.4 86 51.2
AT3G59840 Arabidopsis thaliana HOM05D006197 ORTHO05D007718 6.3e-16 87.4 86 51.2
Carub.0005s2656 Capsella rubella HOM05D006197 ORTHO05D007718 6.3e-16 87.4 86 51.2
Mapoly0127s0016 Marchantia polymorpha HOM05D006197 ORTHO05D007718 8.2e-16 87.0 53 75.5
BcaC07g40434 Brassica carinata HOM05D006197 ORTHO05D007718 1.1e-15 86.7 82 50.0
Cpa.g.sc6.409 Carica papaya HOM05D006197 ORTHO05D007718 1.1e-15 86.7 83 53.0
Thhalv10006335m.g Eutrema salsugineum HOM05D006197 ORTHO05D007718 1.4e-15 86.3 86 50.0
Mapoly0046s0110 Marchantia polymorpha HOM05D006197 ORTHO05D007718 2.4e-15 85.5 54 74.1
SalBow1G7863 Salvia bowleyana HOM05D006197 ORTHO05D007718 2.4e-15 85.5 92 51.1
Sed0004723 Sechium edule HOM05D006197 ORTHO05D007718 2.4e-15 85.5 86 53.5
GSVIVG01013230001 Vitis vinifera HOM05D006197 ORTHO05D007718 2.4e-15 85.5 93 50.5
Duzib205G0278 Durio zibethinus HOM05D006197 ORTHO05D007718 3.1e-15 85.1 94 47.9
Oeu014592.2 Olea europaea HOM05D006197 ORTHO05D007718 4.1e-15 84.7 57 64.9
THA.LOC104819961 Tarenaya hassleriana HOM05D006197 ORTHO05D007718 4.1e-15 84.7 88 51.1
Sp5g03300 Schrenkiella parvula HOM05D006197 ORTHO05D007718 5.3e-15 84.3 99 47.5
CSS0031892 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 9.0e-15 83.6 104 43.3
CSS0033989 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 9.0e-15 83.6 104 43.3
CSS0037645 Camellia sinensis var. sinensis HOM05D006197 ORTHO05D007718 9.0e-15 83.6 104 43.3
AUR62018769 Chenopodium quinoa HOM05D006197 ORTHO05D007718 9.0e-15 83.6 99 49.5
Sed0016057 Sechium edule HOM05D006197 ORTHO05D007718 9.0e-15 83.6 93 49.5
Prupe.5G046200 Prunus persica HOM05D006197 ORTHO05D007718 1.2e-14 83.2 95 48.4
PGR042G3581 Punica granatum HOM05D006197 ORTHO05D007718 1.2e-14 83.2 87 51.7
MD16G1269400 Malus domestica HOM05D006197 ORTHO05D007718 1.5e-14 82.8 93 48.4
CsaV3_3G049530 Cucumis sativus L. HOM05D006197 ORTHO05D007718 2.0e-14 82.4 97 48.5
Dinv28915 Davidia involucrata HOM05D006197 ORTHO05D007718 2.0e-14 82.4 85 51.8
Gohir.A08G159600 Gossypium hirsutum HOM05D006197 ORTHO05D007718 2.0e-14 82.4 94 46.8
COL.COLO4_17110 Corchorus olitorius HOM05D006197 ORTHO05D007718 2.6e-14 82.0 83 48.2
AUR62007231 Chenopodium quinoa HOM05D006197 ORTHO05D007718 3.4e-14 81.6 91 49.5
Duzib068G0126 Durio zibethinus HOM05D006197 ORTHO05D007718 3.4e-14 81.6 94 46.8
Gohir.A04G000300 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.4e-14 81.6 94 46.8
Gohir.D08G180000 Gossypium hirsutum HOM05D006197 ORTHO05D007718 3.4e-14 81.6 94 46.8
Gorai.004G188500 Gossypium raimondii HOM05D006197 ORTHO05D007718 3.4e-14 81.6 94 46.8
BolC8t51081H Brassica oleracea HOM05D000403 ORTHO05D004426 4.5e-14 81.3 76 51.3
Dinv25183 Davidia involucrata HOM05D002285 ORTHO05D009255 4.5e-14 81.3 64 57.8
ECA240G0414 Erigeron canadensis HOM05D006197 ORTHO05D007718 4.5e-14 81.3 52 67.3
FAN04G1051 Fragaria x ananassa HOM05D006197 ORTHO05D007718 4.5e-14 81.3 81 53.1
HanXRQChr08g0234831 Helianthus annuus HOM05D006197 ORTHO05D007718 4.5e-14 81.3 105 46.7
MBI11_g07528_MAGBIO Magnolia biondii HOM05D006197 ORTHO05D007718 4.5e-14 81.3 87 50.6
Nitab4.5_0002055g0120 Nicotiana tabacum HOM05D006197 ORTHO05D007718 4.5e-14 81.3 98 50.0
Actinidia03393 Actinidia chinensis HOM05D004955 ORTHO05D005965 5.9e-14 80.9 97 44.3
CANSAT64G2368 Cannabis sativa HOM05D006197 ORTHO05D007718 5.9e-14 80.9 65 56.9
FAN18G0540 Fragaria x ananassa HOM05D006197 ORTHO05D007718 5.9e-14 80.9 81 53.1
Lsat_1_v5_gn_6_66400 Lactuca sativa HOM05D006197 ORTHO05D007718 5.9e-14 80.9 74 51.4
Os05g0500450 Oryza sativa ssp. japonica HOM05D006197 ORTHO05D007718 5.9e-14 80.9 54 61.1
Atru.chr6.1773 Acer truncatum HOM05D006197 ORTHO05D007718 7.7e-14 80.5 101 43.6
CiPaw.11G087500 Carya illinoinensis HOM05D006197 ORTHO05D007718 7.7e-14 80.5 92 50.0
Cc00_g23310 Coffea canephora HOM05D006197 ORTHO05D007718 7.7e-14 80.5 106 45.3
Cc00_g30230 Coffea canephora HOM05D006197 ORTHO05D007718 7.7e-14 80.5 106 45.3
Cc08_g01810 Coffea canephora HOM05D006197 ORTHO05D007718 7.7e-14 80.5 106 45.3
Migut.N01790 Erythranthe guttata HOM05D006197 ORTHO05D007718 7.7e-14 80.5 92 48.9
SMO119G0374 Selaginella moellendorffii HOM05D006197 ORTHO05D007718 1.0e-13 80.1 109 48.6
Solyc08g077280.1 Solanum lycopersicum HOM05D006197 ORTHO05D007718 1.0e-13 80.1 87 49.4
Thecc.03G234100 Theobroma cacao HOM05D006197 ORTHO05D007718 1.0e-13 80.1 94 46.8
Cc00_g26570 Coffea canephora HOM05D006197 ORTHO05D007718 1.3e-13 79.7 106 45.3
Haze_08298 Corylus avellana HOM05D006197 ORTHO05D007718 1.3e-13 79.7 99 47.5
Cc00_g31810 Coffea canephora HOM05D006197 ORTHO05D007718 2.2e-13 79.0 89 49.4
Cfa012386 Carpinus fangiana HOM05D006197 ORTHO05D007718 2.9e-13 78.6 99 46.5
Hma1.2p1_0311F.1_g121310 Hydrangea macrophylla HOM05D006197 ORTHO05D007718 2.9e-13 78.6 97 48.5
PGSC0003DMG400024214 Solanum tuberosum HOM05D006197 ORTHO05D007718 2.9e-13 78.6 90 45.6
Ciclev10033154m.g Citrus clementina HOM05D006197 ORTHO05D007718 3.8e-13 78.2 92 47.8
Cc08_g01990 Coffea canephora HOM05D006197 ORTHO05D007718 3.8e-13 78.2 64 59.4
MELO3C003373.2 Cucumis melo HOM05D006197 ORTHO05D007718 3.8e-13 78.2 65 58.5
FAN08G0099 Fragaria x ananassa HOM05D006197 ORTHO05D007718 3.8e-13 78.2 89 49.4
Manes.15G173000 Manihot esculenta HOM05D006197 ORTHO05D007718 3.8e-13 78.2 86 46.5
Nn1g03717 Nelumbo nucifera HOM05D006197 ORTHO05D007718 3.8e-13 78.2 87 51.7
Nitab4.5_0006693g0020 Nicotiana tabacum HOM05D006197 ORTHO05D007718 3.8e-13 78.2 98 44.9
TAR624G0346 Trochodendron aralioides HOM05D006197 ORTHO05D007718 3.8e-13 78.2 61 60.7
EL10Ac5g12195 Beta vulgaris HOM05D006197 ORTHO05D007718 5.0e-13 77.8 101 45.5
Sopen05g026900 Solanum pennellii HOM05D006197 ORTHO05D007718 5.0e-13 77.8 90 44.4
Sopen08g025860 Solanum pennellii HOM05D006197 ORTHO05D007718 5.0e-13 77.8 90 44.4
Glyma.01G201200 Glycine max HOM05D006197 ORTHO05D007718 6.5e-13 77.4 79 50.6
Cc08_g02050 Coffea canephora HOM05D006197 ORTHO05D007718 8.5e-13 77.0 94 47.9
Eucgr.E00313 Eucalyptus grandis HOM05D006197 ORTHO05D007718 8.5e-13 77.0 87 47.1
FAN13G1034 Fragaria x ananassa HOM05D006197 ORTHO05D007718 8.5e-13 77.0 78 52.6
Peaxi162Scf00084g00099 Petunia axillaris HOM05D006197 ORTHO05D007718 8.5e-13 77.0 78 48.7
VMungo1215G1228 Vigna mungo HOM05D006197 ORTHO05D007718 8.5e-13 77.0 83 50.6
VMungo1215G3393 Vigna mungo HOM05D006197 ORTHO05D007718 8.5e-13 77.0 83 50.6
Medtr5g013975 Medicago truncatula HOM05D006197 ORTHO05D007718 1.1e-12 76.6 75 50.7
unitig_747.g21291 Utricularia gibba HOM05D006197 ORTHO05D007718 1.1e-12 76.6 99 48.5
Ah.12g053650 Amaranthus hybridus HOM05D006197 ORTHO05D007718 1.4e-12 76.3 103 47.6
ATR1088G052 Amborella trichopoda HOM05D006197 ORTHO05D007718 1.4e-12 76.3 90 44.4
Glyma.11G041000 Glycine max HOM05D006197 ORTHO05D007718 1.4e-12 76.3 96 45.8
Gohir.D12G213400 Gossypium hirsutum HOM05D006197 ORTHO05D007718 1.4e-12 76.3 83 50.6
Gorai.008G229000 Gossypium raimondii HOM05D006197 ORTHO05D007718 1.4e-12 76.3 94 44.7
Phvul.002G004500 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 1.4e-12 76.3 94 45.7
Sabra01G0115400 Salix brachista HOM05D006197 ORTHO05D007718 1.4e-12 76.3 90 44.4
Aqoxy1G03814 Aquilegia oxysepala HOM05D006197 ORTHO05D007718 1.9e-12 75.9 100 43.0
QL12p007107 Quercus lobata HOM05D006197 ORTHO05D007718 1.9e-12 75.9 100 40.0
Oeu006551.1 Olea europaea HOM05D006197 ORTHO05D007718 2.5e-12 75.5 99 43.4
arahy.Tifrunner.gnm1.ann1.M9L3KI Arachis hypogaea HOM05D006197 ORTHO05D007718 3.2e-12 75.1 96 43.8
arahy.Tifrunner.gnm1.ann1.PC0NS4 Arachis hypogaea HOM05D006197 ORTHO05D007718 3.2e-12 75.1 96 43.8
MBI02_g29718_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009071 3.2e-12 75.1 84 51.2
RcHm_v2.0_Chr7g0208331 Rosa chinensis HOM05D006197 ORTHO05D007718 3.2e-12 75.1 103 44.7
DCAR_008300 Daucus carota HOM05D006197 ORTHO05D007718 5.5e-12 74.3 89 49.4
PSO210G4997 Papaver somniferum HOM05D006197 ORTHO05D007718 7.2e-12 73.9 65 56.9
PSO832G1675 Papaver somniferum HOM05D006197 ORTHO05D007718 7.2e-12 73.9 65 56.9
Phvul.002G003700 Phaseolus vulgaris HOM05D006197 ORTHO05D007718 7.2e-12 73.9 94 43.6
Potri.001G146700 Populus trichocarpa HOM05D006197 ORTHO05D007718 7.2e-12 73.9 90 44.4
Rhsim11G0011100 Rhododendron simsii HOM05D006197 ORTHO05D007718 7.2e-12 73.9 87 47.1
TWI81G0993 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 7.2e-12 73.9 101 42.6
Cc08_g01910 Coffea canephora HOM05D006197 ORTHO05D007718 9.4e-12 73.6 64 57.8
Lj2g0021118 Lotus japonicus HOM05D006197 ORTHO05D007718 9.4e-12 73.6 98 45.9
Lalb_Chr09g0323941 Lupinus albus HOM05D006197 ORTHO05D007718 2.1e-11 72.4 65 53.8
Sc01g0007760 Simmondsia chinensis HOM05D006197 ORTHO05D007718 2.1e-11 72.4 90 46.7
Ca_24632_v3 Cicer arietinum L. HOM05D006197 ORTHO05D007718 3.6e-11 71.6 89 46.1
Psat2g174760 Pisum sativum HOM05D006197 ORTHO05D007718 7.9e-11 70.5 92 44.6
TPR.G6747 Trifolium pratense HOM05D006197 ORTHO05D007718 7.9e-11 70.5 62 56.5
TWI15G0656 Tripterygium wilfordii HOM05D006197 ORTHO05D007718 5.1e-10 67.8 83 47.0
Duzib084G1370 Durio zibethinus HOM05D006197 ORTHO05D007718 8.8e-10 67.0 95 41.1
Cc08_g01940 Coffea canephora HOM05D000011 ORTHO05D000157 9.7e-09 63.5 32 71.9
CAN.G799.18 Capsicum annuum HOM05D006197 ORTHO05D007718 1.4e-07 59.7 37 73.0
Eucgr.C01972 Eucalyptus grandis HOM05D006197 ORTHO05D007718 4.5e-06 54.7 63 42.9


User provided reference genes

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