Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_9960 Physcomitrium patens HOM05D004218 ORTHO05D004938 3.2e-234 814.7 407 100.0
Mapoly0004s0239 Marchantia polymorpha HOM05D004218 ORTHO05D004938 1.6e-124 450.3 299 72.9
AagrBONN_evm.TU.Sc2ySwM_362.1084 Anthoceros agrestis HOM05D004218 ORTHO05D004938 4.5e-119 432.2 284 73.6
SMO118G0107 Selaginella moellendorffii HOM05D004218 ORTHO05D004938 4.7e-108 395.6 293 66.6
SEGI_07096 Sequoiadendron giganteum HOM05D004218 ORTHO05D004938 1.8e-104 383.6 312 62.8
Dinv34202 Davidia involucrata HOM05D004218 ORTHO05D004938 1.2e-103 380.9 289 64.7
GSVIVG01020072001 Vitis vinifera HOM05D004218 ORTHO05D004938 4.5e-103 379.0 341 58.7
CANSAT64G2557 Cannabis sativa HOM05D004218 ORTHO05D004938 7.7e-103 378.3 302 61.6
Cfa009032 Carpinus fangiana HOM05D004218 ORTHO05D004938 7.7e-103 378.3 353 57.2
TAR374G0431 Trochodendron aralioides HOM05D004218 ORTHO05D004938 1.0e-102 377.9 289 63.7
Aqoxy3G03270 Aquilegia oxysepala HOM05D004218 ORTHO05D004938 8.5e-102 374.8 384 52.6
MD16G1078500 Malus domestica HOM05D004218 ORTHO05D004938 2.5e-101 373.2 324 59.6
Prupe.1G268000 Prunus persica HOM05D004218 ORTHO05D004938 1.6e-100 370.5 347 55.3
Lj6A794T99 Lonicera japonica HOM05D004218 ORTHO05D004938 2.7e-100 369.8 357 55.5
Potri.008G194800 Populus trichocarpa HOM05D004218 ORTHO05D004938 2.7e-100 369.8 299 63.9
Sopen05g003030 Solanum pennellii HOM05D004218 ORTHO05D004938 3.6e-100 369.4 293 64.2
TPR.G13761 Trifolium pratense HOM05D004218 ORTHO05D004938 3.6e-100 369.4 302 60.6
PSO478G0406 Papaver somniferum HOM05D004218 ORTHO05D004938 8.0e-100 368.2 294 63.6
PGSC0003DMG400017643 Solanum tuberosum HOM05D004218 ORTHO05D004938 8.0e-100 368.2 293 63.1
CAN.G279.12 Capsicum annuum HOM05D004218 ORTHO05D004938 1.0e-99 367.9 334 56.6
Nn3g17132 Nelumbo nucifera HOM05D004218 ORTHO05D004938 1.0e-99 367.9 345 55.7
PSO017G6443 Papaver somniferum HOM05D004218 ORTHO05D004938 1.4e-99 367.5 294 62.6
Hund25269 Selenicereus undatus HOM05D004218 ORTHO05D004938 1.8e-99 367.1 333 57.1
SGA_v2.0_scaffold302G47864 Striga asiatica HOM05D004218 ORTHO05D004938 3.0e-99 366.3 290 63.8
Migut.L01342 Erythranthe guttata HOM05D004218 ORTHO05D004938 3.9e-99 365.9 289 61.9
Os10g0463800 Oryza sativa ssp. japonica HOM05D004218 ORTHO05D004938 3.9e-99 365.9 335 56.4
QL03p065637 Quercus lobata HOM05D004218 ORTHO05D004938 3.9e-99 365.9 324 58.0
Sabra08G0148000 Salix brachista HOM05D004218 ORTHO05D004938 3.9e-99 365.9 308 62.0
CiPaw.05G139700 Carya illinoinensis HOM05D004218 ORTHO05D004938 5.2e-99 365.5 283 63.3
COL.COLO4_07925 Corchorus olitorius HOM05D004218 ORTHO05D004938 5.2e-99 365.5 325 57.2
Gohir.D13G068200 Gossypium hirsutum HOM05D004218 ORTHO05D004938 5.2e-99 365.5 322 58.1
Solyc05g007060.4 Solanum lycopersicum HOM05D004218 ORTHO05D004938 8.8e-99 364.8 293 63.1
Thecc.02G354900 Theobroma cacao HOM05D004218 ORTHO05D004938 8.8e-99 364.8 293 61.8
MSTRG.7824 Avicennia marina HOM05D004218 ORTHO05D004938 1.1e-98 364.4 289 63.3
Lalb_Chr17g0340391 Lupinus albus HOM05D004218 ORTHO05D004938 1.1e-98 364.4 302 60.9
Manes.05G096800 Manihot esculenta HOM05D004218 ORTHO05D004938 1.1e-98 364.4 293 62.8
BolC5t29284H Brassica oleracea HOM05D004218 ORTHO05D004938 1.5e-98 364.0 329 55.6
PGR119G2468 Punica granatum HOM05D004218 ORTHO05D004938 2.0e-98 363.6 326 57.7
vmacro01228 Vaccinium macrocarpon HOM05D004218 ORTHO05D004938 3.3e-98 362.8 289 61.2
Cc11_g13440 Coffea canephora HOM05D004218 ORTHO05D004938 4.4e-98 362.5 294 62.2
Eucgr.G02550 Eucalyptus grandis HOM05D004218 ORTHO05D004938 4.4e-98 362.5 293 61.4
Aa31LG7G8130 Aethionema arabicum HOM05D004218 ORTHO05D004938 5.7e-98 362.1 334 55.4
DCAR_027386 Daucus carota HOM05D004218 ORTHO05D004938 7.4e-98 361.7 297 60.6
RcHm_v2.0_Chr4g0440591 Rosa chinensis HOM05D004218 ORTHO05D004938 7.4e-98 361.7 293 60.8
Phvul.002G066300 Phaseolus vulgaris HOM05D004218 ORTHO05D004938 9.7e-98 361.3 302 59.6
AL1G17150 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.3e-97 360.9 293 60.1
Zm00001eb046510 Zea mays HOM05D004218 ORTHO05D004938 1.7e-97 360.5 328 56.7
AT1G07040 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 2.2e-97 360.1 322 56.2
Gorai.013G077700 Gossypium raimondii HOM05D004218 ORTHO05D004938 2.2e-97 360.1 322 57.5
Medtr5g038460 Medicago truncatula HOM05D004218 ORTHO05D004938 2.2e-97 360.1 297 60.9
THA.LOC104822930 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 2.2e-97 360.1 294 59.2
Hma1.2p1_1545F.1_g289920 Hydrangea macrophylla HOM05D004218 ORTHO05D004938 2.8e-97 359.8 308 59.4
HPP92_000630 Vanilla planifolia HOM05D004218 ORTHO05D004938 2.8e-97 359.8 354 52.3
Duzib248G0205 Durio zibethinus HOM05D004218 ORTHO05D004938 3.7e-97 359.4 293 60.8
FAN17G0090 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.8e-97 359.0 334 55.4
FAN22G1204 Fragaria x ananassa HOM05D004218 ORTHO05D004938 4.8e-97 359.0 293 60.8
CSS0011407 Camellia sinensis var. sinensis HOM05D004218 ORTHO05D004938 6.3e-97 358.6 325 56.9
Ah.01g005530 Amaranthus hybridus HOM05D004218 ORTHO05D004938 8.2e-97 358.2 302 60.3
Carub.0001s0633 Capsella rubella HOM05D004218 ORTHO05D004938 8.2e-97 358.2 293 59.7
Lj2g0000105 Lotus japonicus HOM05D004218 ORTHO05D004938 1.1e-96 357.8 314 57.6
Actinidia31179 Actinidia chinensis HOM05D004218 ORTHO05D004938 1.4e-96 357.5 293 60.8
AUR62026251 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.4e-96 357.5 298 60.7
Ciclev10031724m.g Citrus clementina HOM05D004218 ORTHO05D004938 1.4e-96 357.5 334 53.6
CARHR006730 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.8e-96 357.1 331 54.7
Sp1g05760 Schrenkiella parvula HOM05D004218 ORTHO05D004938 1.8e-96 357.1 323 56.0
Peaxi162Scf00209g00319 Petunia axillaris HOM05D004218 ORTHO05D004938 2.4e-96 356.7 293 60.4
Sc14g0008380 Simmondsia chinensis HOM05D004218 ORTHO05D004938 2.4e-96 356.7 325 57.8
VMungo1215G2729 Vigna mungo HOM05D004218 ORTHO05D004938 3.1e-96 356.3 313 57.2
Cpa.g.sc5.274 Carica papaya HOM05D004218 ORTHO05D004938 5.3e-96 355.5 294 60.9
Ca_04743_v3 Cicer arietinum L. HOM05D004218 ORTHO05D004938 5.3e-96 355.5 299 59.9
HanXRQChr08g0209171 Helianthus annuus HOM05D004218 ORTHO05D004938 5.3e-96 355.5 342 53.8
Lsat_1_v5_gn_8_54121 Lactuca sativa HOM05D004218 ORTHO05D004938 7.0e-96 355.1 319 56.1
Thhalv10007958m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 9.1e-96 354.8 323 55.4
Glyma.02G021600 Glycine max HOM05D004218 ORTHO05D004938 1.2e-95 354.4 302 58.6
A10p05580 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-95 353.6 327 55.7
BraA10t42819Z Brassica rapa HOM05D004218 ORTHO05D004938 2.0e-95 353.6 327 55.7
TWI18G0549 Tripterygium wilfordii HOM05D004218 ORTHO05D004938 2.0e-95 353.6 294 60.9
Rhsim12G0057400 Rhododendron simsii HOM05D004218 ORTHO05D004938 2.6e-95 353.2 321 57.3
CsaV3_6G036150 Cucumis sativus L. HOM05D004218 ORTHO05D004938 5.0e-94 349.0 363 50.1
FAN12G1121 Fragaria x ananassa HOM05D004218 ORTHO05D004938 5.0e-94 349.0 300 59.0
CDE06G2220 Ceratophyllum demersum HOM05D004218 ORTHO05D004938 6.5e-94 348.6 345 53.6
unitig_749.g13251 Utricularia gibba HOM05D004218 ORTHO05D004938 6.5e-94 348.6 320 57.5
arahy.Tifrunner.gnm1.ann1.VAP5EU Arachis hypogaea HOM05D004218 ORTHO05D004938 1.5e-93 347.4 331 55.3
ECA236G4940 Erigeron canadensis HOM05D004218 ORTHO05D004938 1.9e-93 347.1 302 58.3
EL10Ac6g13149 Beta vulgaris HOM05D004218 ORTHO05D004938 2.5e-93 346.7 350 53.4
ATR1120G161 Amborella trichopoda HOM05D004218 ORTHO05D004938 3.2e-93 346.3 303 58.4
Sed0012992 Sechium edule HOM05D004218 ORTHO05D004938 4.2e-93 345.9 353 53.0
Psat0s3244g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.1e-92 343.6 302 57.3
arahy.Tifrunner.gnm1.ann1.08CHDU Arachis hypogaea HOM05D004218 ORTHO05D004938 4.7e-92 342.4 331 54.7
Gohir.A13G052700 Gossypium hirsutum HOM05D004218 ORTHO05D004938 8.8e-91 338.2 338 53.0
MELO3C026498.2 Cucumis melo HOM05D004218 ORTHO05D004938 7.5e-90 335.1 300 56.0
ClCG08G009010 Citrullus lanatus HOM05D004218 ORTHO05D004938 1.2e-87 327.8 427 44.7
FAN07G0325 Fragaria x ananassa HOM05D004218 ORTHO05D004938 8.5e-86 321.6 249 63.9
C05p05130 Brassica napus HOM05D004218 ORTHO05D004938 7.2e-85 318.5 290 55.5
Dinv24956 Davidia involucrata HOM05D004218 ORTHO05D004938 2.7e-84 316.6 278 56.8
SalBow2G1790 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.0e-83 313.2 267 58.4
SalBow2G2061 Salvia bowleyana HOM05D004218 ORTHO05D004938 3.0e-83 313.2 267 58.4
Nitab4.5_0009649g0010 Nicotiana tabacum HOM05D004218 ORTHO05D004938 5.7e-82 308.9 328 51.2
Nitab4.5_0009146g0020 Nicotiana tabacum HOM05D004218 ORTHO05D004938 1.4e-75 287.7 328 49.1
BraA07t29096Z Brassica rapa HOM05D004218 ORTHO05D004938 8.9e-75 285.0 286 50.3
Thhalv10008275m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 8.9e-75 285.0 287 48.1
BcaB06g28798 Brassica carinata HOM05D004218 ORTHO05D004938 2.0e-74 283.9 288 48.6
A07p13210 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-73 281.2 287 49.1
BolC4t27868H Brassica oleracea HOM05D004218 ORTHO05D004938 1.3e-73 281.2 288 48.3
BraA07t29093Z Brassica rapa HOM05D004218 ORTHO05D004938 1.3e-73 281.2 287 49.1
THA.LOC104822097 Tarenaya hassleriana HOM05D004218 ORTHO05D004938 1.3e-73 281.2 303 48.8
A07p13260 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-73 280.8 286 50.0
BcaB03g14100 Brassica carinata HOM05D004218 ORTHO05D004938 3.7e-73 279.6 286 49.7
Thhalv10007811m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.7e-73 279.6 286 49.3
BcaC06g35101 Brassica carinata HOM05D004218 ORTHO05D004938 4.9e-73 279.3 287 48.8
Thhalv10023603m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 6.3e-73 278.9 286 50.0
AL1G38480 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.4e-72 276.9 287 50.2
AT1G27030 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.6e-71 274.2 287 48.8
BcaB03g11982 Brassica carinata HOM05D004218 ORTHO05D004938 1.6e-71 274.2 287 48.8
AL1G38490 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 5.9e-71 272.3 287 48.4
AL1G38500 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.3e-70 271.2 287 47.7
BcaB03g14099 Brassica carinata HOM05D004218 ORTHO05D004938 1.5e-69 267.7 287 47.7
AT1G27020 Arabidopsis thaliana HOM05D004218 ORTHO05D004938 1.9e-69 267.3 287 47.4
Sp1g21770 Schrenkiella parvula HOM05D004218 ORTHO05D004938 2.5e-69 266.9 285 48.1
A07p13220 Brassica napus HOM05D004218 ORTHO05D004938 1.6e-68 264.2 287 47.0
C07p19810 Brassica napus HOM05D004218 ORTHO05D004938 2.1e-68 263.8 287 47.0
BolC7t42494H Brassica oleracea HOM05D004218 ORTHO05D004938 2.1e-68 263.8 287 47.0
CARHR024900 Cardamine hirsuta HOM05D004218 ORTHO05D004938 2.1e-68 263.8 285 47.0
Thhalv10008276m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 2.8e-68 263.5 285 47.7
Atru.chr11.1849 Acer truncatum HOM05D004218 ORTHO05D004938 3.6e-68 263.1 214 59.3
BraA08t34706Z Brassica rapa HOM05D004218 ORTHO05D004938 3.6e-68 263.1 297 46.1
Thhalv10000255m.g Eutrema salsugineum HOM05D004218 ORTHO05D004938 3.6e-68 263.1 284 47.2
BcaC06g35098 Brassica carinata HOM05D004218 ORTHO05D004938 8.0e-68 261.9 272 49.3
Sp1g21780 Schrenkiella parvula HOM05D004218 ORTHO05D004938 8.0e-68 261.9 287 45.3
CARHR024890 Cardamine hirsuta HOM05D004218 ORTHO05D004938 1.0e-67 261.5 293 46.1
Carub.0001s2395 Capsella rubella HOM05D004218 ORTHO05D004938 3.1e-67 260.0 293 47.4
AUR62026441 Chenopodium quinoa HOM05D004218 ORTHO05D004938 1.2e-66 258.1 252 53.6
A08p27710 Brassica napus HOM05D004218 ORTHO05D004938 2.0e-66 257.3 297 45.1
Carub.0001s2394 Capsella rubella HOM05D004218 ORTHO05D004938 1.3e-65 254.6 289 44.6
A09p40450 Brassica napus HOM05D004218 ORTHO05D004938 1.7e-65 254.2 288 47.2
BraA09t39542Z Brassica rapa HOM05D004218 ORTHO05D004938 1.7e-65 254.2 288 46.9
FvH4_4g31940 Fragaria vesca HOM05D004218 ORTHO05D004938 4.9e-65 252.7 211 57.8
BcaC07g39255 Brassica carinata HOM05D004218 ORTHO05D004938 2.4e-64 250.4 290 45.5
Sp1g21785 Schrenkiella parvula HOM05D004218 ORTHO05D004938 3.2e-64 250.0 288 45.5
BraA07t29094Z Brassica rapa HOM05D004218 ORTHO05D004938 6.0e-63 245.7 287 44.9
Psat0s917g0040 Pisum sativum HOM05D004218 ORTHO05D004938 2.3e-62 243.8 211 56.4
AL1G38470 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 2.1e-60 237.3 265 45.7
C08p22580 Brassica napus HOM05D004218 ORTHO05D004938 3.2e-56 223.4 363 36.9
PRCOL_00000833 Prasinoderma coloniale HOM05D004218 ORTHO05D004938 4.1e-56 223.0 290 43.4
Cre07.g342800 Chlamydomonas reinhardtii HOM05D004218 ORTHO05D004938 2.7e-55 220.3 332 41.3
BcaC05g26350 Brassica carinata HOM05D004218 ORTHO05D004938 6.0e-55 219.2 288 44.4
BolC5t31091H Brassica oleracea HOM05D004218 ORTHO05D004938 5.1e-54 216.1 274 44.5
C05p23720 Brassica napus HOM05D004218 ORTHO05D004938 4.7e-52 209.5 267 44.2
BcaC06g35100 Brassica carinata HOM05D004218 ORTHO05D004938 1.4e-51 208.0 244 45.5
Glyma.01G042500 Glycine max HOM05D004218 ORTHO05D004938 7.1e-48 195.7 271 42.8
Haze_12061 Corylus avellana HOM05D004218 ORTHO05D004938 2.7e-47 193.7 221 48.9
C07p19800 Brassica napus HOM05D004218 ORTHO05D004938 5.1e-46 189.5 183 50.3
BolC7t42493H Brassica oleracea HOM05D004218 ORTHO05D004938 5.1e-46 189.5 183 50.3
AL8G21080 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.1e-45 188.3 219 48.4
BcaC05g24668 Brassica carinata HOM05D004218 ORTHO05D002942 3.6e-36 156.8 210 41.4
Lj6A794G97 Lonicera japonica HOM05D004218 ORTHO05D004938 3.8e-33 146.7 197 46.2
BolC7t42500H Brassica oleracea HOM05D004218 ORTHO05D004938 2.7e-31 140.6 128 53.1
BolC8t49896H Brassica oleracea HOM05D004218 ORTHO05D004938 8.7e-30 135.6 152 44.1
C07p19850 Brassica napus HOM05D004218 ORTHO05D004938 1.3e-28 131.7 128 50.0
BolC7t42503H Brassica oleracea HOM05D004218 ORTHO05D004938 1.3e-28 131.7 128 50.0
AL8G21090 Arabidopsis lyrata HOM05D004218 ORTHO05D004938 1.7e-25 121.3 285 29.5
C07p19830 Brassica napus HOM05D004218 ORTHO05D004938 2.7e-23 114.0 144 43.1
C07p19840 Brassica napus HOM05D004218 ORTHO05D004938 7.9e-23 112.5 108 50.0
AUR62026443 Chenopodium quinoa HOM05D004218 ORTHO05D004938 3.3e-21 107.1 78 67.9
MCO10G201 Micromonas commoda HOM05D004218 ORTHO05D004938 2.8e-20 104.0 501 25.7
CAN.G683.6 Capsicum annuum HOM05D004218 ORTHO05D004938 6.9e-19 99.4 98 57.1
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 4.2e-08 63.5 80 45.0


User provided reference genes

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