Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_9740 Physcomitrium patens HOM05D019088 ORTHO05D006341 0.0e+00 2274.2 1265 100.0
Pp3c10_6810 Physcomitrium patens HOM05D019088 ORTHO05D006341 0.0e+00 1268.4 1273 59.9
Pp3c1_27330 Physcomitrium patens HOM05D019088 ORTHO05D006341 1.1e-232 811.2 1275 45.4
Pp3c14_1700 Physcomitrium patens HOM05D005525 ORTHO05D006341 1.5e-88 332.4 1189 28.3
Pp3c6_22830 Physcomitrium patens HOM05D019088 ORTHO05D006341 2.2e-87 328.6 1150 29.0
Pp3c2_18840 Physcomitrium patens HOM05D005525 ORTHO05D006341 2.8e-87 328.2 1247 28.1
Pp3c5_9550 Physcomitrium patens HOM05D019088 ORTHO05D006341 4.7e-82 310.8 1134 30.1
SEGI_37005 Sequoiadendron giganteum HOM05D005525 ORTHO05D006341 2.1e-37 162.5 697 25.4
Duzib068G0374 Durio zibethinus HOM05D005525 ORTHO05D006341 8.4e-31 140.6 547 27.2
Duzib205G1243 Durio zibethinus HOM05D005525 ORTHO05D006341 3.0e-28 132.1 549 27.1
Gohir.A03G052000 Gossypium hirsutum HOM05D005525 ORTHO05D006341 1.3e-26 126.7 566 27.7
Thecc.03G200300 Theobroma cacao HOM05D005525 ORTHO05D006341 2.8e-26 125.6 545 27.0
TAR636G1140 Trochodendron aralioides HOM05D005525 ORTHO05D006341 3.6e-26 125.2 554 26.7
TAR375G0567 Trochodendron aralioides HOM05D005525 ORTHO05D006341 4.8e-26 124.8 540 25.9
COL.COLO4_16772 Corchorus olitorius HOM05D005525 ORTHO05D006341 9.0e-25 120.6 547 28.0
Gohir.D03G115100 Gossypium hirsutum HOM05D005525 ORTHO05D006341 9.0e-25 120.6 553 28.2
DCAR_010595 Daucus carota HOM05D005525 ORTHO05D006341 1.5e-24 119.8 443 27.5
Gorai.003G121400 Gossypium raimondii HOM05D005525 ORTHO05D006341 1.5e-24 119.8 560 28.4
Cc02_g01440 Coffea canephora HOM05D005525 ORTHO05D006341 3.8e-23 115.2 592 25.2
HPP92_027874 Vanilla planifolia HOM05D005525 ORTHO05D006341 3.8e-23 115.2 527 25.6
GSVIVG01038560001 Vitis vinifera HOM05D005525 ORTHO05D006341 6.4e-23 114.4 520 25.4
CSS0016451 Camellia sinensis var. sinensis HOM05D005525 ORTHO05D006341 8.4e-23 114.0 497 26.8
Actinidia03175 Actinidia chinensis HOM05D005525 ORTHO05D006341 1.9e-22 112.8 536 25.0
CSS0028512 Camellia sinensis var. sinensis HOM05D005525 ORTHO05D006341 2.4e-22 112.5 605 24.1
Sabra12G0015700 Salix brachista HOM05D005525 ORTHO05D006341 3.2e-22 112.1 553 25.3
MSTRG.8648 Avicennia marina HOM05D005525 ORTHO05D006341 4.2e-22 111.7 542 27.3
Lj3A903T39 Lonicera japonica HOM05D005525 ORTHO05D006341 4.2e-22 111.7 437 26.5
PSO063G1159 Papaver somniferum HOM05D005525 ORTHO05D006341 4.2e-22 111.7 537 25.9
Eucgr.A01450 Eucalyptus grandis HOM05D005525 ORTHO05D006341 2.7e-21 109.0 495 27.5
TAR425G0002 Trochodendron aralioides HOM05D005525 ORTHO05D006341 4.6e-21 108.2 532 25.0
MELO3C008500.2 Cucumis melo HOM05D005525 ORTHO05D006341 7.9e-21 107.5 514 26.3
Actinidia06143 Actinidia chinensis HOM05D005525 ORTHO05D006341 1.8e-20 106.3 437 26.8
QL09p008682 Quercus lobata HOM05D005525 ORTHO05D006341 1.8e-20 106.3 533 25.9
Nitab4.5_0007005g0020 Nicotiana tabacum HOM05D005525 ORTHO05D006341 2.3e-20 105.9 426 27.0
TWI39G0464 Tripterygium wilfordii HOM05D005525 ORTHO05D006341 2.3e-20 105.9 552 23.7
Peaxi162Scf00740g10015 Petunia axillaris HOM05D005525 ORTHO05D006341 3.0e-20 105.5 547 27.6
PGSC0003DMG400018550 Solanum tuberosum HOM05D005525 ORTHO05D006341 3.0e-20 105.5 541 26.6
Nitab4.5_0007888g0020 Nicotiana tabacum HOM05D005525 ORTHO05D006341 3.9e-20 105.1 433 26.8
arahy.Tifrunner.gnm1.ann1.SHH15X Arachis hypogaea HOM05D005525 ORTHO05D006341 5.1e-20 104.8 511 27.0
MD07G1287000 Malus domestica HOM05D005525 ORTHO05D006341 6.7e-20 104.4 592 25.5
Nn3g18957 Nelumbo nucifera HOM05D005525 ORTHO05D006341 8.7e-20 104.0 543 26.2
MSTRG.27021 Avicennia marina HOM05D005525 ORTHO05D006341 1.1e-19 103.6 536 26.1
CsaV3_3G019800 Cucumis sativus L. HOM05D005525 ORTHO05D006341 1.5e-19 103.2 525 25.3
MBI07_g24776_MAGBIO Magnolia biondii HOM05D005525 ORTHO05D006341 1.5e-19 103.2 574 23.3
Potri.012G016600 Populus trichocarpa HOM05D005525 ORTHO05D006341 1.9e-19 102.8 551 25.4
arahy.Tifrunner.gnm1.ann1.9S9EKZ Arachis hypogaea HOM05D005525 ORTHO05D006341 2.5e-19 102.4 511 26.8
Pp3c17_2150 Physcomitrium patens HOM05D019088 ORTHO05D006341 2.5e-19 102.4 429 28.2
Rhsim09G0206200 Rhododendron simsii HOM05D005525 ORTHO05D006341 2.5e-19 102.4 451 25.3
vmacro10127 Vaccinium macrocarpon HOM05D005525 ORTHO05D006341 2.5e-19 102.4 562 24.0
Gohir.D12G250100 Gossypium hirsutum HOM05D005525 ORTHO05D006341 3.3e-19 102.1 557 25.7
Prupe.2G309100 Prunus persica HOM05D005525 ORTHO05D006341 3.3e-19 102.1 551 26.5
Atru.chr12.2235 Acer truncatum HOM05D005525 ORTHO05D006341 4.3e-19 101.7 542 25.1
Hma1.2p1_0404F.1_g145280 Hydrangea macrophylla HOM05D005525 ORTHO05D006341 7.4e-19 100.9 538 24.3
Phvul.009G051800 Phaseolus vulgaris HOM05D005525 ORTHO05D006341 7.4e-19 100.9 510 24.7
Sopen03g022860 Solanum pennellii HOM05D005525 ORTHO05D006341 7.4e-19 100.9 532 26.5
Hma1.2p1_1587F.1_g292280 Hydrangea macrophylla HOM05D005525 ORTHO05D006341 1.3e-18 100.1 533 24.0
Solyc03g083060.3 Solanum lycopersicum HOM05D005525 ORTHO05D006341 1.3e-18 100.1 530 26.2
HanXRQChr04g0100481 Helianthus annuus HOM05D005525 ORTHO05D006341 1.6e-18 99.8 493 24.1
FAN06G2949 Fragaria x ananassa HOM05D005525 ORTHO05D006341 2.1e-18 99.4 534 25.7
Gorai.008G268200 Gossypium raimondii HOM05D005525 ORTHO05D006341 2.8e-18 99.0 556 24.5
Lsat_1_v5_gn_2_136220 Lactuca sativa HOM05D005525 ORTHO05D006341 3.7e-18 98.6 423 26.7
Lj1A1021T46 Lonicera japonica HOM05D005525 ORTHO05D006341 4.8e-18 98.2 429 24.9
Lj1C1018G9 Lonicera japonica HOM05D005525 ORTHO05D006341 4.8e-18 98.2 429 24.9
Manes.02G143500 Manihot esculenta HOM05D005525 ORTHO05D006341 4.8e-18 98.2 548 23.0
Sed0006937 Sechium edule HOM05D005525 ORTHO05D006341 4.8e-18 98.2 514 25.9
PSO170G3224 Papaver somniferum HOM05D005525 ORTHO05D006341 6.2e-18 97.8 559 25.2
FAN06G1464 Fragaria x ananassa HOM05D005525 ORTHO05D006341 1.4e-17 96.7 534 25.5
CAN.G481.19 Capsicum annuum HOM05D005525 ORTHO05D006341 1.8e-17 96.3 516 25.8
Glyma.04G234800 Glycine max HOM05D005525 ORTHO05D006341 3.1e-17 95.5 505 24.2
ATR0602G130 Amborella trichopoda HOM05D005525 ORTHO05D006341 5.3e-17 94.7 522 24.5
Haze_00203 Corylus avellana HOM05D005525 ORTHO05D006341 5.3e-17 94.7 493 24.7
Glyma.06G129650 Glycine max HOM05D005525 ORTHO05D006341 5.3e-17 94.7 508 24.6
Potri.015G012000 Populus trichocarpa HOM05D005525 ORTHO05D006341 5.3e-17 94.7 547 24.1
HPP92_006332 Vanilla planifolia HOM05D005525 ORTHO05D006341 5.3e-17 94.7 436 25.2
ClCG05G008980 Citrullus lanatus HOM05D005525 ORTHO05D006341 6.9e-17 94.4 551 24.5
Aqoxy5G03920 Aquilegia oxysepala HOM05D005525 ORTHO05D006341 9.0e-17 94.0 539 23.7
Lj2g0006014 Lotus japonicus HOM05D005525 ORTHO05D006341 1.5e-16 93.2 404 25.7
Medtr3g091650 Medicago truncatula HOM05D005525 ORTHO05D006341 1.5e-16 93.2 512 23.6
Cpa.g.sc3.96 Carica papaya HOM05D005525 ORTHO05D006341 3.4e-16 92.0 558 23.8
CiPaw.05G197600 Carya illinoinensis HOM05D005525 ORTHO05D006341 1.3e-15 90.1 636 23.1
FvH4_7g31370 Fragaria vesca HOM05D005525 ORTHO05D006341 1.3e-15 90.1 530 24.5
FAN01G0744 Fragaria x ananassa HOM05D005525 ORTHO05D006341 2.2e-15 89.4 534 24.3
Manes.01G184300 Manihot esculenta HOM05D005525 ORTHO05D006341 2.2e-15 89.4 553 24.2
Cfa016238 Carpinus fangiana HOM05D005525 ORTHO05D006341 2.9e-15 89.0 453 25.4
Oeu041060.1 Olea europaea HOM05D005525 ORTHO05D006341 3.8e-15 88.6 527 23.9
Ciclev10018919m.g Citrus clementina HOM05D005525 ORTHO05D006341 4.9e-15 88.2 683 23.1
FAN03G1856 Fragaria x ananassa HOM05D005525 ORTHO05D006341 1.1e-14 87.0 529 23.8
RcHm_v2.0_Chr1g0380441 Rosa chinensis HOM05D005525 ORTHO05D006341 1.9e-14 86.3 529 25.1
Mapoly0077s0024 Marchantia polymorpha HOM05D019088 ORTHO05D006341 2.5e-14 85.9 418 25.6
SGA_v2.0_scaffold192G40531 Striga asiatica HOM05D005525 ORTHO05D006341 2.5e-14 85.9 420 25.0
AUR62019416 Chenopodium quinoa HOM05D005525 ORTHO05D006341 3.2e-14 85.5 554 23.1
CANSAT21G1899 Cannabis sativa HOM05D005525 ORTHO05D006341 9.3e-14 84.0 528 22.7
Sabra15G0009700 Salix brachista HOM05D005525 ORTHO05D006341 2.1e-13 82.8 529 23.8
THA.LOC104799969 Tarenaya hassleriana HOM05D005525 ORTHO05D006341 2.1e-13 82.8 265 30.2
VMungo1309G0981 Vigna mungo HOM05D005525 ORTHO05D005321 2.1e-13 82.8 428 23.8
Psat5g076600 Pisum sativum HOM05D005525 ORTHO05D006341 2.7e-13 82.4 551 22.9
PGR042G3532 Punica granatum HOM05D005525 ORTHO05D006341 4.6e-13 81.6 697 23.5
TPR.G18747 Trifolium pratense HOM05D005525 ORTHO05D006341 4.6e-13 81.6 523 22.4
Lalb_Chr08g0240181 Lupinus albus HOM05D005525 ORTHO05D006341 6.0e-13 81.3 443 23.7
AUR62006078 Chenopodium quinoa HOM05D005525 ORTHO05D006341 1.0e-12 80.5 552 21.9
Dinv29269 Davidia involucrata HOM05D005525 ORTHO05D006341 1.3e-12 80.1 410 24.4
Ca_16715_v3 Cicer arietinum L. HOM05D005525 ORTHO05D006341 2.3e-12 79.3 514 23.5
CDE10G1205 Ceratophyllum demersum HOM05D005525 ORTHO05D006341 6.7e-12 77.8 477 22.4
TWI14G1294 Tripterygium wilfordii HOM05D005525 ORTHO05D006341 1.5e-11 76.6 540 23.1
Hund11649 Selenicereus undatus HOM05D005525 ORTHO05D006341 7.4e-11 74.3 547 22.7
Hund21011 Selenicereus undatus HOM05D005525 ORTHO05D006341 2.8e-10 72.4 461 22.6
Gohir.A12G249300 Gossypium hirsutum HOM05D005525 ORTHO05D006341 5.3e-09 68.2 332 26.2
Thhalv10012800m.g Eutrema salsugineum HOM05D005525 ORTHO05D006341 1.2e-08 67.0 271 27.3
unitig_52.g17717 Utricularia gibba HOM05D005525 ORTHO05D006341 1.2e-08 67.0 227 28.6
SalBow2G0921 Salvia bowleyana HOM05D005525 ORTHO05D006341 2.6e-08 65.9 357 26.6
EL10Ac3g05265 Beta vulgaris HOM05D005525 ORTHO05D006341 1.0e-07 63.9 449 21.4
unitig_92.g28252 Utricularia gibba HOM05D005525 ORTHO05D006341 1.0e-07 63.9 421 24.7
Zm00001eb162450 Zea mays HOM05D005525 ORTHO05D006341 2.9e-07 62.4 457 21.9
Zm00001eb441470 Zea mays HOM05D005525 ORTHO05D006341 2.9e-07 62.4 457 21.9
SEGI_17880 Sequoiadendron giganteum HOM05D005525 ORTHO05D006341 1.1e-06 60.5 375 24.0
CARHR266030 Cardamine hirsuta HOM05D005525 ORTHO05D006341 5.5e-06 58.2 265 28.7
Aa31LG3G9460 Aethionema arabicum HOM05D005525 ORTHO05D006341 7.1e-06 57.8 101 39.6
Os01g0550600 Oryza sativa ssp. japonica HOM05D005525 ORTHO05D006341 9.3e-06 57.4 411 21.9


User provided reference genes

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