Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_5820 Physcomitrium patens HOM05D003774 ORTHO05D009174 1.8e-87 325.9 165 100.0
Pp3c17_9260 Physcomitrium patens HOM05D003774 ORTHO05D009174 1.2e-30 137.1 77 88.3
Pp3c10_21530 Physcomitrium patens HOM05D003774 ORTHO05D009174 1.3e-16 90.5 77 57.1
Mapoly0002s0135 Marchantia polymorpha HOM05D003774 ORTHO05D009174 2.2e-16 89.7 92 50.0
SEGI_30677 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 3.2e-15 85.9 90 50.0
SEGI_34335 Sequoiadendron giganteum HOM05D003774 ORTHO05D009174 3.2e-15 85.9 90 50.0
Lj3g0005610 Lotus japonicus HOM05D003774 ORTHO05D009174 5.5e-15 85.1 66 56.1
Zm00001eb348780 Zea mays HOM05D003774 ORTHO05D009174 7.1e-15 84.7 70 52.9
Potri.019G079000 Populus trichocarpa HOM05D003774 ORTHO05D009174 2.1e-14 83.2 66 51.5
GSVIVG01026084001 Vitis vinifera HOM05D003774 ORTHO05D009174 2.7e-14 82.8 84 45.2
DCAR_003529 Daucus carota HOM05D003774 ORTHO05D009174 6.0e-14 81.6 97 43.3
Nn1g08406 Nelumbo nucifera HOM05D003774 ORTHO05D009174 1.0e-13 80.9 66 56.1
Phvul.005G000200 Phaseolus vulgaris HOM05D003774 ORTHO05D009174 1.3e-13 80.5 66 54.5
Aqoxy5G02648 Aquilegia oxysepala HOM05D003774 ORTHO05D009174 1.8e-13 80.1 66 54.5
MSTRG.22470 Avicennia marina HOM05D003774 ORTHO05D009174 1.8e-13 80.1 65 52.3
Cfa012969 Carpinus fangiana HOM05D003774 ORTHO05D009174 1.8e-13 80.1 66 51.5
MBI09_g10676_MAGBIO Magnolia biondii HOM05D003774 ORTHO05D009174 1.8e-13 80.1 66 57.6
Nitab4.5_0001463g0050 Nicotiana tabacum HOM05D003774 ORTHO05D009174 2.3e-13 79.7 66 51.5
Gohir.D13G122800 Gossypium hirsutum HOM05D003774 ORTHO05D009174 3.0e-13 79.3 94 42.6
Gorai.013G137800 Gossypium raimondii HOM05D003774 ORTHO05D009174 3.0e-13 79.3 94 42.6
Actinidia29410 Actinidia chinensis HOM05D003774 ORTHO05D009174 3.9e-13 79.0 88 44.3
ATR0320G028 Amborella trichopoda HOM05D003774 ORTHO05D009174 3.9e-13 79.0 111 42.3
ECA247G3883 Erigeron canadensis HOM05D003774 ORTHO05D009174 3.9e-13 79.0 66 51.5
Gohir.A13G119000 Gossypium hirsutum HOM05D003774 ORTHO05D009174 3.9e-13 79.0 94 42.6
Oeu013896.2 Olea europaea HOM05D003774 ORTHO05D009174 3.9e-13 79.0 65 52.3
Lsat_1_v5_gn_1_25820 Lactuca sativa HOM05D003774 ORTHO05D009174 5.1e-13 78.6 66 53.0
Manes.02G198600 Manihot esculenta HOM05D003774 ORTHO05D009174 5.1e-13 78.6 66 51.5
Sc09g0006790 Simmondsia chinensis HOM05D003774 ORTHO05D009174 5.1e-13 78.6 67 50.7
PGSC0003DMG402025647 Solanum tuberosum HOM05D003774 ORTHO05D009174 5.1e-13 78.6 66 51.5
TAR624G0812 Trochodendron aralioides HOM05D003774 ORTHO05D009174 5.1e-13 78.6 65 53.8
VMungo1080G0925 Vigna mungo HOM05D003774 ORTHO05D009174 5.1e-13 78.6 68 51.5
AUR62004600 Chenopodium quinoa HOM05D003774 ORTHO05D009174 6.7e-13 78.2 68 51.5
HanXRQChr02g0036581 Helianthus annuus HOM05D003774 ORTHO05D009174 6.7e-13 78.2 66 50.0
Sabra13G0091200 Salix brachista HOM05D003774 ORTHO05D009174 6.7e-13 78.2 66 51.5
COL.COLO4_24651 Corchorus olitorius HOM05D003774 ORTHO05D009174 8.7e-13 77.8 66 47.0
FvH4_5g31620 Fragaria vesca HOM05D003774 ORTHO05D009174 8.7e-13 77.8 66 48.5
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 8.7e-13 77.8 66 48.5
Cc10_g09600 Coffea canephora HOM05D003774 ORTHO05D009174 1.1e-12 77.4 103 36.9
Glyma.06G325100 Glycine max HOM05D003774 ORTHO05D009174 1.1e-12 77.4 66 54.5
Nitab4.5_0005616g0010 Nicotiana tabacum HOM05D003774 ORTHO05D009174 1.9e-12 76.6 66 50.0
TWI59G1355 Tripterygium wilfordii HOM05D003774 ORTHO05D009174 1.9e-12 76.6 68 51.5
CSS0038880 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 2.5e-12 76.3 66 50.0
CiPaw.07G235700 Carya illinoinensis HOM05D003774 ORTHO05D009174 2.5e-12 76.3 114 40.4
Duzib211G0171 Durio zibethinus HOM05D003774 ORTHO05D009174 2.5e-12 76.3 96 43.8
FAN22G1282 Fragaria x ananassa HOM05D003774 ORTHO05D009174 2.5e-12 76.3 66 47.0
PGR042G3286 Punica granatum HOM05D003774 ORTHO05D009174 2.5e-12 76.3 121 39.7
RcHm_v2.0_Chr7g0227151 Rosa chinensis HOM05D003774 ORTHO05D009174 2.5e-12 76.3 66 47.0
Thecc.08G192500 Theobroma cacao HOM05D003774 ORTHO05D009174 2.5e-12 76.3 66 48.5
Ah.05g178580 Amaranthus hybridus HOM05D003774 ORTHO05D009174 3.3e-12 75.9 102 40.2
EL10Ac1g00136 Beta vulgaris HOM05D003774 ORTHO05D009174 3.3e-12 75.9 66 50.0
Dinv19855 Davidia involucrata HOM05D003774 ORTHO05D009174 3.3e-12 75.9 96 40.6
QL02p014374 Quercus lobata HOM05D003774 ORTHO05D009174 3.3e-12 75.9 66 48.5
AUR62023544 Chenopodium quinoa HOM05D003774 ORTHO05D009174 4.3e-12 75.5 68 50.0
AT1G35420 Arabidopsis thaliana HOM05D003774 ORTHO05D009174 5.6e-12 75.1 71 53.5
Psat1g003280 Pisum sativum HOM05D003774 ORTHO05D009174 5.6e-12 75.1 66 51.5
Medtr3g005060 Medicago truncatula HOM05D003774 ORTHO05D009174 7.4e-12 74.7 84 45.2
Prupe.1G555600 Prunus persica HOM05D003774 ORTHO05D009174 7.4e-12 74.7 66 47.0
HPP92_011935 Vanilla planifolia HOM05D003774 ORTHO05D009174 7.4e-12 74.7 66 50.0
HPP92_011955 Vanilla planifolia HOM05D003774 ORTHO05D009174 7.4e-12 74.7 66 50.0
Atru.chr13.2367 Acer truncatum HOM05D003774 ORTHO05D009174 9.6e-12 74.3 66 48.5
CDE02G0175 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 9.6e-12 74.3 68 47.1
Sopen11g022610 Solanum pennellii HOM05D003774 ORTHO05D009174 9.6e-12 74.3 115 36.5
CDE08G1139 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 1.3e-11 73.9 128 37.5
CsaV3_5G040550 Cucumis sativus L. HOM05D003774 ORTHO05D009174 1.3e-11 73.9 68 47.1
CANSAT25G3020 Cannabis sativa HOM05D003774 ORTHO05D009174 1.6e-11 73.6 93 44.1
Ciclev10001943m.g Citrus clementina HOM05D003774 ORTHO05D009174 1.6e-11 73.6 118 34.7
Aa31LG6G8720 Aethionema arabicum HOM05D003774 ORTHO05D009174 2.1e-11 73.2 67 49.3
MD08G1217800 Malus domestica HOM05D003774 ORTHO05D009174 2.1e-11 73.2 71 47.9
CARHR034180 Cardamine hirsuta HOM05D003774 ORTHO05D009174 2.8e-11 72.8 94 39.4
Eucgr.F02990 Eucalyptus grandis HOM05D003774 ORTHO05D009174 2.8e-11 72.8 111 36.9
PSO170G6059 Papaver somniferum HOM05D003774 ORTHO05D009174 2.8e-11 72.8 86 44.2
TPR.G25492 Trifolium pratense HOM05D003774 ORTHO05D009174 2.8e-11 72.8 66 50.0
CDE08G0174 Ceratophyllum demersum HOM05D003774 ORTHO05D009174 3.7e-11 72.4 66 48.5
SalBow6G0569 Salvia bowleyana HOM05D003774 ORTHO05D009174 3.7e-11 72.4 65 49.2
SalBow6G5656 Salvia bowleyana HOM05D003774 ORTHO05D009174 3.7e-11 72.4 65 49.2
Solyc11g027840.2 Solanum lycopersicum HOM05D003774 ORTHO05D009174 3.7e-11 72.4 115 35.7
PSO017G5271 Papaver somniferum HOM05D003774 ORTHO05D009174 4.8e-11 72.0 86 44.2
AL1G50230 Arabidopsis lyrata HOM05D003774 ORTHO05D009174 6.2e-11 71.6 80 47.5
MELO3C022228.2 Cucumis melo HOM05D003774 ORTHO05D009174 8.1e-11 71.2 89 41.6
Rhsim11G0052900 Rhododendron simsii HOM05D003774 ORTHO05D009174 8.1e-11 71.2 98 38.8
THA.LOC104816521 Tarenaya hassleriana HOM05D003774 ORTHO05D009174 1.8e-10 70.1 77 44.2
AagrBONN_evm.TU.Sc2ySwM_228.1693 Anthoceros agrestis HOM05D003774 ORTHO05D009174 3.1e-10 69.3 77 44.2
CSS0003364 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 3.1e-10 69.3 66 45.5
A09p31810 Brassica napus HOM05D003774 ORTHO05D009174 4.0e-10 68.9 67 47.8
ClCG08G000170 Citrullus lanatus HOM05D003774 ORTHO05D009174 4.0e-10 68.9 67 46.3
Carub.0001s3302 Capsella rubella HOM05D003774 ORTHO05D009174 5.3e-10 68.6 87 42.5
Migut.N03372 Erythranthe guttata HOM05D003774 ORTHO05D009174 5.3e-10 68.6 91 38.5
SGA_v2.0_scaffold25G11034 Striga asiatica HOM05D003774 ORTHO05D009174 6.9e-10 68.2 66 48.5
BcaB07g33408 Brassica carinata HOM05D003774 ORTHO05D009174 1.5e-09 67.0 108 38.9
BcaC08g43731 Brassica carinata HOM05D003774 ORTHO05D009174 2.0e-09 66.6 96 41.7
C06p11130 Brassica napus HOM05D003774 ORTHO05D009174 2.0e-09 66.6 96 41.7
BolC6t36236H Brassica oleracea HOM05D003774 ORTHO05D009174 2.0e-09 66.6 96 41.7
CSS0038100 Camellia sinensis var. sinensis HOM05D003774 ORTHO05D009174 2.6e-09 66.2 66 43.9
BraA09t38720Z Brassica rapa HOM05D003774 ORTHO05D009174 4.5e-09 65.5 97 43.3
Sp1g30140 Schrenkiella parvula HOM05D003774 ORTHO05D009174 5.8e-09 65.1 103 34.0
BcaNung06721 Brassica carinata HOM05D003774 ORTHO05D009174 1.7e-08 63.5 106 38.7
Thhalv10001825m.g Eutrema salsugineum HOM05D003774 ORTHO05D009174 6.5e-08 61.6 102 35.3
Os05g0429500 Oryza sativa ssp. japonica HOM05D003774 ORTHO05D009174 8.4e-08 61.2 44 61.4
Haze_21313 Corylus avellana HOM05D003774 ORTHO05D009174 3.5e-06 55.8 46 50.0


User provided reference genes

Program Settings