Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 0.0e+00 1894.4 948 100.0
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 7.4e-266 921.0 940 51.1
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 4.4e-258 895.2 965 49.8
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 1.3e-257 893.6 969 49.3
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 1.6e-220 770.4 973 44.5
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 4.6e-215 752.3 980 44.2
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 6.6e-214 748.4 980 43.2
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 5.6e-213 745.3 971 44.1
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 1.6e-212 743.8 980 42.2
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 2.8e-212 743.0 974 44.4
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 8.1e-212 741.5 983 43.0
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 4.0e-211 739.2 964 42.5
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 6.8e-211 738.4 975 43.6
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 6.8e-211 738.4 978 42.4
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 1.5e-210 737.3 982 42.7
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 2.6e-210 736.5 981 43.3
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 2.6e-210 736.5 981 43.2
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 7.5e-210 734.9 979 43.3
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 9.8e-210 734.6 980 42.8
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 6.4e-209 731.9 982 42.7
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 6.4e-209 731.9 981 42.6
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 7.1e-208 728.4 956 42.1
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 9.2e-208 728.0 976 43.3
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 1.3e-206 724.2 967 42.3
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 8.6e-206 721.5 987 42.0
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 2.5e-205 719.9 969 42.0
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 3.3e-205 719.5 969 42.8
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 4.3e-205 719.2 986 42.5
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 4.3e-205 719.2 963 43.2
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 7.3e-205 718.4 963 43.2
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 9.5e-205 718.0 980 41.8
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 2.8e-204 716.5 1033 40.9
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 2.8e-204 716.5 954 41.7
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 1.8e-203 713.8 970 42.7
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 2.3e-203 713.4 973 41.5
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 4.0e-203 712.6 979 41.5
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 5.2e-203 712.2 983 42.7
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 1.2e-202 711.1 969 41.7
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 1.5e-202 710.7 968 42.3
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.0e-202 710.3 980 41.3
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 4.4e-202 709.1 970 42.5
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 5.8e-202 708.8 965 41.2
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 5.8e-202 708.8 967 41.5
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 7.6e-202 708.4 963 42.7
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 9.9e-202 708.0 984 41.3
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 8.4e-201 704.9 983 41.9
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 1.4e-200 704.1 969 42.7
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 3.2e-200 703.0 981 41.9
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 9.2e-200 701.4 984 40.7
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 9.2e-200 701.4 977 40.8
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 2.1e-199 700.3 1006 41.6
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 2.7e-199 699.9 883 44.3
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 7.8e-199 698.4 967 41.7
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 1.0e-198 698.0 983 41.3
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 1.0e-198 698.0 984 41.7
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 2.3e-198 696.8 916 43.6
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 3.0e-198 696.4 1043 40.7
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 3.9e-198 696.0 977 40.4
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 5.1e-198 695.7 977 40.6
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 6.6e-198 695.3 978 41.4
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 6.6e-198 695.3 982 41.8
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 1.5e-197 694.1 969 41.8
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 1.5e-197 694.1 971 41.2
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 7.3e-197 691.8 998 41.1
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 1.6e-196 690.6 982 41.0
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 4.7e-196 689.1 976 41.4
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.4e-195 687.6 988 40.4
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 2.4e-195 686.8 983 40.8
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 5.2e-195 685.6 978 41.1
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 8.9e-195 684.9 932 42.3
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 5.8e-194 682.2 957 41.5
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 9.9e-194 681.4 980 40.3
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 1.3e-193 681.0 970 41.2
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.7e-193 680.6 937 41.9
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 2.9e-193 679.9 1010 40.5
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 1.1e-192 677.9 956 42.3
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.9e-192 677.2 980 40.1
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 3.2e-192 676.4 983 42.5
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 1.6e-191 674.1 977 40.4
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 2.7e-191 673.3 971 41.4
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 2.7e-191 673.3 963 41.3
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 3.5e-191 672.9 953 41.4
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 2.3e-190 670.2 964 41.4
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 2.3e-190 670.2 964 41.8
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 2.3e-190 670.2 964 41.8
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 2.3e-190 670.2 964 41.4
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 3.0e-190 669.8 967 42.1
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 5.1e-190 669.1 944 40.9
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 1.5e-189 667.5 972 40.7
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 1.9e-189 667.2 961 41.2
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 5.6e-189 665.6 961 41.2
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 1.6e-188 664.1 937 41.2
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 4.8e-188 662.5 955 40.5
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 1.4e-187 661.0 957 41.1
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 5.3e-187 659.1 959 40.8
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 9.0e-187 658.3 965 41.3
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 1.5e-186 657.5 893 43.3
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 2.6e-186 656.8 979 40.6
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 4.4e-186 656.0 1044 38.4
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 2.2e-185 653.7 962 40.9
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 2.9e-185 653.3 853 44.2
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 1.1e-184 651.4 961 40.8
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 1.1e-184 651.4 957 40.3
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 1.2e-183 647.9 790 45.4
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 3.5e-183 646.4 969 40.2
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 1.0e-182 644.8 961 40.6
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 1.7e-182 644.0 984 41.1
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 3.4e-178 629.8 965 40.0
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 8.7e-166 588.6 632 48.7
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 1.9e-165 587.4 985 37.2
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 7.4e-165 585.5 689 45.0
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 9.6e-165 585.1 943 37.8
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 7.4e-157 558.9 839 40.0
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 2.4e-155 553.9 849 38.4
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 1.4e-147 528.1 585 47.4
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 1.8e-147 527.7 915 37.5
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 9.8e-125 452.2 497 47.5
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.9e-89 334.0 336 50.9
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 9.3e-75 286.2 1053 26.1
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 6.2e-63 246.9 210 59.5
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 2.0e-61 241.9 496 31.9
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 7.6e-61 240.0 314 42.0
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 3.2e-59 234.6 365 39.5
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 1.0e-57 229.6 502 30.9
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 6.7e-57 226.9 207 54.1
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.1e-51 209.5 208 51.9
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 3.0e-49 201.4 509 32.4
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.6e-34 151.4 237 38.8
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.6e-34 151.4 261 37.2
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.0e-29 135.6 245 36.3
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 2.6e-29 135.2 207 40.1
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 1.2e-26 126.3 241 31.5
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 2.1e-26 125.6 142 44.4
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 2.1e-26 125.6 121 53.7
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 7.4e-24 117.1 237 35.0
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.5e-21 108.2 222 31.5
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.5e-21 108.2 222 31.5
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 3.5e-21 108.2 222 31.5
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 7.7e-21 107.1 222 31.1
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 2.2e-20 105.5 142 42.3
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 2.9e-20 105.1 222 31.1
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 7.2e-19 100.5 161 37.9
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 6.3e-15 87.4 222 29.3
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 7.0e-14 84.0 164 33.5
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 7.7e-13 80.5 242 28.5
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 3.2e-11 75.1 233 30.0
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 4.2e-11 74.7 233 29.6
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 5.5e-11 74.3 233 29.6
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 8.8e-09 67.0 73 42.5
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 1.3e-07 63.2 167 31.1
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.4e-06 59.7 58 46.6


User provided reference genes

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