Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_5270 Physcomitrium patens HOM05D021458 ORTHO05D023500 1.6e-266 922.5 603 100.0
Pp3c10_5380 Physcomitrium patens HOM05D021458 ORTHO05D023500 1.1e-206 723.8 536 91.4
Mapoly0068s0029 Marchantia polymorpha HOM05D021458 ORTHO05D023500 3.7e-186 655.6 567 78.3
AagrBONN_evm.TU.Sc2ySwM_344.667 Anthoceros agrestis HOM05D021458 ORTHO05D023500 1.9e-182 643.3 565 71.3
CBR_g51034 Chara braunii HOM05D021458 ORTHO05D023500 5.2e-55 219.9 223 54.3
Duzib168G1503 Durio zibethinus HOM05D000467 ORTHO05D000379 2.5e-09 68.2 214 24.8
Sopen07g023410 Solanum pennellii HOM05D001610 ORTHO05D001585 3.3e-09 67.8 276 24.3
Dinv11944 Davidia involucrata HOM05D001610 ORTHO05D001585 4.3e-09 67.4 535 19.4
Medtr1g019470 Medicago truncatula HOM05D000467 ORTHO05D000379 5.6e-09 67.0 189 29.1
Peaxi162Scf00047g02230 Petunia axillaris HOM05D001610 ORTHO05D001585 5.6e-09 67.0 259 25.1
Ciclev10019514m.g Citrus clementina HOM05D001610 ORTHO05D001585 9.6e-09 66.2 263 27.0
Solyc07g044850.3 Solanum lycopersicum HOM05D001610 ORTHO05D001585 1.3e-08 65.9 276 24.3
Lj2A1141T59 Lonicera japonica HOM05D001610 ORTHO05D001585 1.6e-08 65.5 305 24.3
Sabra06G0201700 Salix brachista HOM05D000467 ORTHO05D000379 1.6e-08 65.5 214 24.3
Haze_21483 Corylus avellana HOM05D000467 ORTHO05D000379 2.1e-08 65.1 214 23.8
unitig_62.g23251 Utricularia gibba HOM05D001610 ORTHO05D001585 2.1e-08 65.1 277 24.9
THA.LOC104801118 Tarenaya hassleriana HOM05D001610 ORTHO05D001585 2.8e-08 64.7 260 25.8
CANSAT25G0970 Cannabis sativa HOM05D000467 ORTHO05D000379 3.6e-08 64.3 212 23.1
Potri.006G257900 Populus trichocarpa HOM05D000467 ORTHO05D000379 3.6e-08 64.3 214 24.3
Potri.014G194100 Populus trichocarpa HOM05D001610 ORTHO05D001585 4.8e-08 63.9 281 26.3
PGSC0003DMG400007716 Solanum tuberosum HOM05D001610 ORTHO05D001585 4.8e-08 63.9 312 24.7
Thecc.09G021000 Theobroma cacao HOM05D000467 ORTHO05D000379 4.8e-08 63.9 214 24.3
CiPaw.07G225800 Carya illinoinensis HOM05D000467 ORTHO05D000379 6.2e-08 63.5 215 24.2
Cfa013118 Carpinus fangiana HOM05D000467 ORTHO05D000379 8.1e-08 63.2 214 23.8
Haze_24746 Corylus avellana HOM05D001610 ORTHO05D001585 8.1e-08 63.2 307 25.4
HanXRQChr02g0042801 Helianthus annuus HOM05D001610 ORTHO05D001585 8.1e-08 63.2 565 19.6
MD11G1043800 Malus domestica HOM05D000467 ORTHO05D000379 8.1e-08 63.2 213 23.0
Oeu056934.2 Olea europaea HOM05D000467 ORTHO05D000379 8.1e-08 63.2 260 21.9
CSS0040123 Camellia sinensis var. sinensis HOM05D001610 ORTHO05D001585 1.4e-07 62.4 320 22.8
CARHR277580 Cardamine hirsuta HOM05D001610 ORTHO05D001585 1.4e-07 62.4 269 21.2
CBR_g12176 Chara braunii HOM05D003825 ORTHO05D004491 1.8e-07 62.0 86 40.7
DCAR_026871 Daucus carota HOM05D001610 ORTHO05D001585 1.8e-07 62.0 571 19.4
Pp3c11_18610 Physcomitrium patens HOM05D001610 ORTHO05D001585 1.8e-07 62.0 307 22.1
CiPaw.03G272700 Carya illinoinensis HOM05D001610 ORTHO05D001585 2.4e-07 61.6 263 26.6
AUR62008828 Chenopodium quinoa HOM05D001610 ORTHO05D001585 2.4e-07 61.6 260 25.0
ECA246G2154 Erigeron canadensis HOM05D001610 ORTHO05D001585 3.1e-07 61.2 310 22.3
Nitab4.5_0004406g0050 Nicotiana tabacum HOM05D001610 ORTHO05D001585 3.1e-07 61.2 261 23.4
Potri.018G023800 Populus trichocarpa HOM05D000467 ORTHO05D000379 3.1e-07 61.2 219 25.1
Sabra18G0026500 Salix brachista HOM05D000467 ORTHO05D000379 3.1e-07 61.2 219 25.1
ClCG11G016590 Citrullus lanatus HOM05D001610 ORTHO05D001585 4.0e-07 60.8 282 23.0
MD17G1133000 Malus domestica HOM05D001610 ORTHO05D001585 4.0e-07 60.8 94 34.0
Nitab4.5_0000019g0280 Nicotiana tabacum HOM05D001610 ORTHO05D001585 4.0e-07 60.8 257 22.2
Nitab4.5_0008321g0020 Nicotiana tabacum HOM05D001610 ORTHO05D001585 4.0e-07 60.8 264 22.7
Pp3c7_3690 Physcomitrium patens HOM05D001610 ORTHO05D001585 4.0e-07 60.8 306 22.5
HPP92_018686 Vanilla planifolia HOM05D001610 ORTHO05D001585 4.0e-07 60.8 535 19.8
AagrBONN_evm.TU.Sc2ySwM_340.45 Anthoceros agrestis HOM05D001610 ORTHO05D001585 5.3e-07 60.5 340 22.1
Nitab4.5_0006378g0030 Nicotiana tabacum HOM05D001610 ORTHO05D001585 5.3e-07 60.5 259 24.3
Sopen03g013260 Solanum pennellii HOM05D005323 ORTHO05D006820 5.3e-07 60.5 82 37.8
PGSC0003DMG400026328 Solanum tuberosum HOM05D005323 ORTHO05D006820 5.3e-07 60.5 82 37.8
Prupe.8G212300 Prunus persica HOM05D001610 ORTHO05D001585 6.9e-07 60.1 262 25.2
TWI15G0703 Tripterygium wilfordii HOM05D005323 ORTHO05D006820 6.9e-07 60.1 83 38.6
AUR62034925 Chenopodium quinoa HOM05D004758 ORTHO05D006063 9.0e-07 59.7 88 40.9
Gohir.A10G144900 Gossypium hirsutum HOM05D005323 ORTHO05D006820 9.0e-07 59.7 82 37.8
Gohir.D10G122100 Gossypium hirsutum HOM05D005323 ORTHO05D006820 9.0e-07 59.7 82 37.8
Gorai.011G134300 Gossypium raimondii HOM05D005323 ORTHO05D006820 9.0e-07 59.7 82 37.8
Lj8A98T43 Lonicera japonica HOM05D001610 ORTHO05D001585 9.0e-07 59.7 548 26.8
Manes.16G124700 Manihot esculenta HOM05D000467 ORTHO05D000379 9.0e-07 59.7 214 22.9
Sed0013916 Sechium edule HOM05D005323 ORTHO05D006820 9.0e-07 59.7 82 37.8
Sc16g0006150 Simmondsia chinensis HOM05D005323 ORTHO05D006820 9.0e-07 59.7 82 37.8
Lsat_1_v5_gn_3_36081 Lactuca sativa HOM05D001610 ORTHO05D001585 1.2e-06 59.3 556 19.4
Sabra19G0107500 Salix brachista HOM05D005323 ORTHO05D006820 1.2e-06 59.3 82 39.0
TWI63G1046 Tripterygium wilfordii HOM05D005323 ORTHO05D006820 1.2e-06 59.3 82 37.8
Zm00001eb173190 Zea mays HOM05D001610 ORTHO05D001585 1.2e-06 59.3 311 21.9
Actinidia15760 Actinidia chinensis HOM05D000467 ORTHO05D000379 1.5e-06 58.9 193 24.9
Migut.M00083 Erythranthe guttata HOM05D001610 ORTHO05D001585 1.5e-06 58.9 87 37.9
Lj1g0017737 Lotus japonicus HOM05D005323 ORTHO05D006820 1.5e-06 58.9 82 37.8
QL02p020983 Quercus lobata HOM05D000467 ORTHO05D000379 1.5e-06 58.9 214 22.4
Sabra19G0108600 Salix brachista HOM05D005323 ORTHO05D006820 1.5e-06 58.9 82 39.0
Sed0022183 Sechium edule HOM05D006688 ORTHO05D008550 1.5e-06 58.9 91 34.1
Solyc05g025510.3 Solanum lycopersicum HOM05D001610 ORTHO05D001585 1.5e-06 58.9 310 22.3
Gohir.D09G007400 Gossypium hirsutum HOM05D001610 ORTHO05D001585 2.0e-06 58.5 545 20.2
Mapoly0049s0059 Marchantia polymorpha HOM05D005323 ORTHO05D006820 2.0e-06 58.5 82 36.6
Nitab4.5_0006644g0020 Nicotiana tabacum HOM05D001610 ORTHO05D001585 2.0e-06 58.5 264 22.3
PGR042G1263 Punica granatum HOM05D005323 ORTHO05D006820 2.0e-06 58.5 82 39.0
Cpa.g.sc17.20 Carica papaya HOM05D005323 ORTHO05D006820 2.6e-06 58.2 82 37.8
AUR62031624 Chenopodium quinoa HOM05D005323 ORTHO05D006820 2.6e-06 58.2 82 37.8
COL.COLO4_38123 Corchorus olitorius HOM05D005323 ORTHO05D006820 2.6e-06 58.2 82 36.6
Dinv18320 Davidia involucrata HOM05D005323 ORTHO05D006820 2.6e-06 58.2 82 37.8
Gorai.006G008900 Gossypium raimondii HOM05D001610 ORTHO05D001585 2.6e-06 58.2 553 20.1
Mapoly0005s0175 Marchantia polymorpha HOM05D001610 ORTHO05D001585 2.6e-06 58.2 308 22.1
Nitab4.5_0000285g0060 Nicotiana tabacum HOM05D005323 ORTHO05D006820 2.6e-06 58.2 82 37.8
Potri.019G096900 Populus trichocarpa HOM05D005323 ORTHO05D006820 2.6e-06 58.2 82 37.8
QL09p042455 Quercus lobata HOM05D001610 ORTHO05D001585 2.6e-06 58.2 264 23.9
Sopen05g019720 Solanum pennellii HOM05D001610 ORTHO05D001585 2.6e-06 58.2 314 22.3
Thecc.01G166700 Theobroma cacao HOM05D001610 ORTHO05D001585 2.6e-06 58.2 87 34.5
Aa31LG1G25490 Aethionema arabicum HOM05D005323 ORTHO05D006820 3.4e-06 57.8 82 37.8
MELO3C011851.2 Cucumis melo HOM05D005323 ORTHO05D006820 3.4e-06 57.8 82 37.8
Glyma.19G170400 Glycine max HOM05D001610 ORTHO05D001585 3.4e-06 57.8 311 22.2
MBI18_g38095_MAGBIO Magnolia biondii HOM05D001610 ORTHO05D001585 3.4e-06 57.8 260 23.8
Peaxi162Scf00883g00035 Petunia axillaris HOM05D005323 ORTHO05D006820 3.4e-06 57.8 82 37.8
Phvul.001G114300 Phaseolus vulgaris HOM05D005323 ORTHO05D006820 3.4e-06 57.8 82 36.6
RcHm_v2.0_Chr2g0152471 Rosa chinensis HOM05D001610 ORTHO05D001585 3.4e-06 57.8 255 23.5
Sabra05G0157100 Salix brachista HOM05D001610 ORTHO05D001585 3.4e-06 57.8 326 22.7
Thecc.04G163800 Theobroma cacao HOM05D005323 ORTHO05D006820 3.4e-06 57.8 82 36.6
Aqoxy4G00048 Aquilegia oxysepala HOM05D001610 ORTHO05D001585 4.5e-06 57.4 313 21.7
AL7G16770 Arabidopsis lyrata HOM05D003825 ORTHO05D004491 4.5e-06 57.4 89 36.0
AT4G34460 Arabidopsis thaliana HOM05D003825 ORTHO05D004491 4.5e-06 57.4 89 36.0
CANSAT78G2171 Cannabis sativa HOM05D001610 ORTHO05D001585 4.5e-06 57.4 266 24.8
CARHR242280 Cardamine hirsuta HOM05D003825 ORTHO05D004491 4.5e-06 57.4 89 36.0
CiPaw.02G099700 Carya illinoinensis HOM05D005323 ORTHO05D006820 4.5e-06 57.4 82 37.8
AUR62025412 Chenopodium quinoa HOM05D001610 ORTHO05D001585 4.5e-06 57.4 260 24.2
Peaxi162Scf00359g01221 Petunia axillaris HOM05D001610 ORTHO05D001585 4.5e-06 57.4 259 21.6
Psat7g043880 Pisum sativum HOM05D006688 ORTHO05D008550 4.5e-06 57.4 94 31.9
PGR083G2127 Punica granatum HOM05D001610 ORTHO05D001585 4.5e-06 57.4 263 25.1
Sed0007716 Sechium edule HOM05D001610 ORTHO05D001585 4.5e-06 57.4 90 34.4
SMO361G0390 Selaginella moellendorffii HOM05D002303 ORTHO05D006504 4.5e-06 57.4 109 32.1
Actinidia17819 Actinidia chinensis HOM05D003825 ORTHO05D004491 5.8e-06 57.0 89 34.8
AUR62011330 Chenopodium quinoa HOM05D003825 ORTHO05D004491 5.8e-06 57.0 92 32.6
AUR62016731 Chenopodium quinoa HOM05D003825 ORTHO05D004491 5.8e-06 57.0 92 32.6
AUR62020514 Chenopodium quinoa HOM05D005323 ORTHO05D006820 5.8e-06 57.0 82 36.6
Ca_08300_v3 Cicer arietinum L. HOM05D005323 ORTHO05D006820 5.8e-06 57.0 82 36.6
Ciclev10028655m.g Citrus clementina HOM05D003825 ORTHO05D004491 5.8e-06 57.0 89 34.8
Dinv33215 Davidia involucrata HOM05D005323 ORTHO05D006820 5.8e-06 57.0 82 36.6
FvH4_4g10290 Fragaria vesca HOM05D005323 ORTHO05D006820 5.8e-06 57.0 82 37.8
FAN07G1750 Fragaria x ananassa HOM05D005323 ORTHO05D006820 5.8e-06 57.0 82 37.8
FAN12G3690 Fragaria x ananassa HOM05D005323 ORTHO05D006820 5.8e-06 57.0 82 37.8
FAN12G3871 Fragaria x ananassa HOM05D005323 ORTHO05D006820 5.8e-06 57.0 82 37.8
FAN17G0326 Fragaria x ananassa HOM05D005323 ORTHO05D006820 5.8e-06 57.0 82 37.8
PSO675G7486 Papaver somniferum HOM05D001610 ORTHO05D001585 5.8e-06 57.0 87 35.6
Pp3c6_28640 Physcomitrium patens HOM05D005323 ORTHO05D006820 5.8e-06 57.0 82 36.6
QL01p000253 Quercus lobata HOM05D001610 ORTHO05D001585 5.8e-06 57.0 97 33.0
Rhsim09G0008200 Rhododendron simsii HOM05D005323 ORTHO05D006820 5.8e-06 57.0 82 37.8
RcHm_v2.0_Chr4g0405641 Rosa chinensis HOM05D005323 ORTHO05D006820 5.8e-06 57.0 82 37.8
Actinidia27124 Actinidia chinensis HOM05D005323 ORTHO05D006820 7.6e-06 56.6 82 35.4
Ah.01g006230 Amaranthus hybridus HOM05D003825 ORTHO05D004491 7.6e-06 56.6 92 32.6
A01p03980 Brassica napus HOM05D003825 ORTHO05D004491 7.6e-06 56.6 89 34.8
A05p03980 Brassica napus HOM05D005323 ORTHO05D006820 7.6e-06 56.6 82 36.6
C01p04290 Brassica napus HOM05D003825 ORTHO05D004491 7.6e-06 56.6 89 34.8
BolC1t00419H Brassica oleracea HOM05D003825 ORTHO05D004491 7.6e-06 56.6 89 34.8
BraA01t00386Z Brassica rapa HOM05D003825 ORTHO05D004491 7.6e-06 56.6 89 34.8
CSS0020323 Camellia sinensis var. sinensis HOM05D005323 ORTHO05D006820 7.6e-06 56.6 82 37.8
Carub.0007s0584 Capsella rubella HOM05D003825 ORTHO05D004491 7.6e-06 56.6 89 36.0
AUR62026609 Chenopodium quinoa HOM05D004758 ORTHO05D006063 7.6e-06 56.6 88 39.8
Duzib187G1035 Durio zibethinus HOM05D001610 ORTHO05D001585 7.6e-06 56.6 87 33.3
Thhalv10001531m.g Eutrema salsugineum HOM05D005323 ORTHO05D006820 7.6e-06 56.6 82 37.8
FAN22G1090 Fragaria x ananassa HOM05D005323 ORTHO05D006820 7.6e-06 56.6 82 37.8
Lsat_1_v5_gn_1_16041 Lactuca sativa HOM05D001610 ORTHO05D001585 7.6e-06 56.6 89 38.2
Manes.01G016900 Manihot esculenta HOM05D005323 ORTHO05D006820 7.6e-06 56.6 82 36.6
PSO675G8969 Papaver somniferum HOM05D001610 ORTHO05D001585 7.6e-06 56.6 87 34.5
Rhsim13G0166600 Rhododendron simsii HOM05D001610 ORTHO05D001585 7.6e-06 56.6 91 34.1
THA.LOC104818401 Tarenaya hassleriana HOM05D001610 ORTHO05D001585 7.6e-06 56.6 310 23.9
TPR.G9451 Trifolium pratense HOM05D006688 ORTHO05D008550 7.6e-06 56.6 94 31.9
TAR624G0727 Trochodendron aralioides HOM05D001610 ORTHO05D001585 7.6e-06 56.6 307 22.8
unitig_52.g17318 Utricularia gibba HOM05D001610 ORTHO05D001585 7.6e-06 56.6 87 37.9
Atru.chr5.3006 Acer truncatum HOM05D003825 ORTHO05D004491 9.9e-06 56.2 92 33.7
EL10Ac4g07922 Beta vulgaris HOM05D005323 ORTHO05D006820 9.9e-06 56.2 82 36.6
BcaB02g08902 Brassica carinata HOM05D005323 ORTHO05D006820 9.9e-06 56.2 82 36.6
BcaC02g12364 Brassica carinata HOM05D005323 ORTHO05D006820 9.9e-06 56.2 82 36.6
BcaNung07194 Brassica carinata HOM05D003825 ORTHO05D004491 9.9e-06 56.2 89 34.8
C04p04730 Brassica napus HOM05D005323 ORTHO05D006820 9.9e-06 56.2 82 36.6
BolC4t22103H Brassica oleracea HOM05D005323 ORTHO05D006820 9.9e-06 56.2 82 36.6
BraA05t19386Z Brassica rapa HOM05D005323 ORTHO05D006820 9.9e-06 56.2 82 36.6
CSS0007779 Camellia sinensis var. sinensis HOM05D003825 ORTHO05D004491 9.9e-06 56.2 89 33.7
Cpa.g.sc62.142 Carica papaya HOM05D003825 ORTHO05D004491 9.9e-06 56.2 89 33.7
COL.COLO4_33153 Corchorus olitorius HOM05D001610 ORTHO05D001585 9.9e-06 56.2 317 22.4
CsaV3_4G032060 Cucumis sativus L. HOM05D001610 ORTHO05D001585 9.9e-06 56.2 90 33.3
CsaV3_4G032080 Cucumis sativus L. HOM05D001610 ORTHO05D001585 9.9e-06 56.2 335 21.8
CsaV3_5G030120 Cucumis sativus L. HOM05D005323 ORTHO05D006820 9.9e-06 56.2 82 36.6
Dinv17656 Davidia involucrata HOM05D001610 ORTHO05D001585 9.9e-06 56.2 308 19.8
Duzib264G0527 Durio zibethinus HOM05D001610 ORTHO05D001585 9.9e-06 56.2 556 20.0
Eucgr.L00010 Eucalyptus grandis HOM05D005323 ORTHO05D006820 9.9e-06 56.2 82 36.6
Thhalv10025475m.g Eutrema salsugineum HOM05D003825 ORTHO05D004491 9.9e-06 56.2 89 34.8
Medtr4g125950 Medicago truncatula HOM05D006688 ORTHO05D008550 9.9e-06 56.2 94 30.9
Pp3c5_3050 Physcomitrium patens HOM05D005323 ORTHO05D006820 9.9e-06 56.2 82 37.8
Sp7g32260 Schrenkiella parvula HOM05D003825 ORTHO05D004491 9.9e-06 56.2 89 34.8
Sed0027128 Sechium edule HOM05D001610 ORTHO05D001585 9.9e-06 56.2 87 34.5
Sc18g0004560 Simmondsia chinensis HOM05D003825 ORTHO05D004491 9.9e-06 56.2 92 33.7
Zm00001eb052290 Zea mays HOM05D003825 ORTHO05D004491 9.9e-06 56.2 85 34.1


User provided reference genes

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