Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.9e-97 357.8 185 100.0
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.9e-97 357.8 185 100.0
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.9e-61 239.6 175 73.1
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 3.8e-33 145.6 154 50.6
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 6.5e-33 144.8 153 51.6
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 1.9e-32 143.3 165 50.9
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 4.2e-32 142.1 154 50.0
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 9.4e-32 141.0 169 46.2
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 1.6e-31 140.2 151 48.3
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 2.7e-31 139.4 149 49.7
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 2.7e-31 139.4 161 47.2
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 2.7e-31 139.4 151 49.7
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 6.1e-31 138.3 150 50.0
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 7.9e-31 137.9 153 49.7
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 7.9e-31 137.9 153 49.7
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 7.9e-31 137.9 153 51.0
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 7.9e-31 137.9 149 48.3
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 7.9e-31 137.9 151 47.7
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 1.4e-30 137.1 151 49.0
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 1.8e-30 136.7 155 52.9
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 1.8e-30 136.7 169 46.7
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 2.3e-30 136.3 147 51.7
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 2.3e-30 136.3 165 45.5
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 2.3e-30 136.3 152 49.3
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 3.0e-30 136.0 151 48.3
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 3.0e-30 136.0 149 47.0
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 5.2e-30 135.2 151 47.0
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 5.2e-30 135.2 150 48.7
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 8.8e-30 134.4 149 49.0
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 8.8e-30 134.4 169 46.2
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 1.1e-29 134.0 149 48.3
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 1.1e-29 134.0 149 49.0
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 1.5e-29 133.7 156 48.1
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 1.5e-29 133.7 149 47.7
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 1.5e-29 133.7 149 48.3
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 2.0e-29 133.3 150 48.0
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 2.0e-29 133.3 156 46.2
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 2.0e-29 133.3 152 48.0
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.6e-29 132.9 151 47.7
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 2.6e-29 132.9 149 49.0
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 3.3e-29 132.5 149 47.7
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 3.3e-29 132.5 156 49.4
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 3.3e-29 132.5 177 41.8
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 3.3e-29 132.5 168 42.3
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 4.4e-29 132.1 151 45.0
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 4.4e-29 132.1 150 47.3
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 5.7e-29 131.7 149 50.3
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 5.7e-29 131.7 158 46.8
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 7.4e-29 131.3 147 46.3
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 7.4e-29 131.3 152 46.7
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 7.4e-29 131.3 147 49.0
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 9.7e-29 131.0 154 46.8
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 9.7e-29 131.0 175 44.6
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 9.7e-29 131.0 156 44.9
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 1.3e-28 130.6 146 48.6
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.3e-28 130.6 161 45.3
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 1.3e-28 130.6 161 45.3
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 2.2e-28 129.8 149 47.7
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 2.2e-28 129.8 152 46.7
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.8e-28 129.4 153 45.8
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 2.8e-28 129.4 147 48.3
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 2.8e-28 129.4 149 49.0
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.8e-28 129.4 147 49.0
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 3.7e-28 129.0 149 48.3
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 3.7e-28 129.0 149 47.0
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 3.7e-28 129.0 150 48.7
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 4.8e-28 128.6 146 48.6
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 4.8e-28 128.6 149 46.3
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.8e-28 128.6 149 46.3
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.8e-28 128.6 149 46.3
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 4.8e-28 128.6 156 45.5
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 8.2e-28 127.9 154 46.8
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 8.2e-28 127.9 163 46.0
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 8.2e-28 127.9 156 46.8
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 8.2e-28 127.9 150 47.3
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 1.1e-27 127.5 153 46.4
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 1.1e-27 127.5 157 45.2
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.1e-27 127.5 155 45.2
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.8e-27 126.7 149 46.3
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 1.8e-27 126.7 151 46.4
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 2.4e-27 126.3 146 47.9
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.1e-27 125.6 149 45.6
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.6e-26 123.6 144 45.1
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 1.6e-26 123.6 157 44.6
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.6e-26 123.6 158 42.4
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 2.0e-26 123.2 149 46.3
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 5.9e-26 121.7 147 44.9
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 7.7e-26 121.3 148 45.9
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 7.7e-26 121.3 148 46.6
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 7.7e-26 121.3 160 45.0
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 1.3e-25 120.6 148 44.6
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 1.3e-25 120.6 147 45.6
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 1.7e-25 120.2 147 44.9
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 1.7e-25 120.2 151 43.7
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 2.2e-25 119.8 147 45.6
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 2.2e-25 119.8 147 45.6
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 2.2e-25 119.8 156 42.3
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 2.9e-25 119.4 147 44.2
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 2.9e-25 119.4 147 44.2
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 2.9e-25 119.4 148 43.9
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 3.8e-25 119.0 163 41.1
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 5.0e-25 118.6 147 44.2
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 5.0e-25 118.6 151 41.1
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 6.5e-25 118.2 151 42.4
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 6.5e-25 118.2 152 46.1
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 8.5e-25 117.9 174 44.3
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 1.1e-24 117.5 146 43.8
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 1.9e-24 116.7 126 49.2
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 2.5e-24 116.3 146 43.8
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 2.5e-24 116.3 126 49.2
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 2.5e-24 116.3 126 49.2
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 2.5e-24 116.3 146 44.5
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 2.5e-24 116.3 126 49.2
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 3.2e-24 115.9 146 44.5
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 5.5e-24 115.2 126 47.6
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.2e-23 114.0 148 41.2
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 2.7e-23 112.8 123 45.5
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 3.6e-23 112.5 189 39.2
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 1.8e-19 100.1 155 41.3
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 2.4e-19 99.8 170 43.5
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.0e-18 96.7 123 44.7
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 2.7e-18 96.3 153 36.6
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.5e-16 90.5 122 43.4
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 9.4e-16 87.8 130 37.7
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 9.4e-16 87.8 130 37.7
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 9.4e-16 87.8 128 39.8
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 9.4e-16 87.8 127 37.0
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 1.2e-15 87.4 155 38.1
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 3.7e-12 75.9 104 40.4
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.4e-11 73.9 145 33.1
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 3.1e-11 72.8 238 23.9
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 7.2e-08 61.6 122 35.2
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 1.6e-07 60.5 108 36.1
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 1.4e-06 57.4 111 32.4
Cre17.g717250 Chlamydomonas reinhardtii HOM05D005090 ORTHO05D006142 8.8e-06 54.7 44 56.8


User provided reference genes

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