Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 6.6e-120 434.1 227 100.0
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 2.4e-82 309.3 222 74.3
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 5.0e-59 231.9 204 61.3
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 5.0e-43 178.7 211 46.0
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 4.2e-42 175.6 140 61.4
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 5.5e-42 175.3 164 54.9
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.2e-41 174.1 182 50.0
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 2.7e-41 172.9 171 52.6
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 3.6e-41 172.6 170 51.2
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 4.7e-41 172.2 172 48.3
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 1.8e-40 170.2 170 52.9
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 2.3e-40 169.9 172 51.7
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 2.3e-40 169.9 173 50.9
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 4.0e-40 169.1 165 50.3
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 1.1e-39 167.5 171 51.5
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 1.5e-39 167.2 188 49.5
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 1.5e-39 167.2 171 49.7
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 1.5e-39 167.2 173 49.1
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 2.6e-39 166.4 171 49.7
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 3.3e-39 166.0 169 50.3
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 3.3e-39 166.0 171 48.0
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 7.5e-39 164.9 179 44.7
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 7.5e-39 164.9 169 47.3
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 2.8e-38 162.9 172 48.3
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 3.7e-38 162.5 171 48.0
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 3.7e-38 162.5 173 49.7
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 4.8e-38 162.2 171 49.1
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 4.8e-38 162.2 169 47.3
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 8.2e-38 161.4 169 49.7
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 1.1e-37 161.0 165 49.1
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 1.4e-37 160.6 164 50.6
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 1.4e-37 160.6 168 47.6
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 1.8e-37 160.2 171 49.7
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 1.8e-37 160.2 165 49.7
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 1.8e-37 160.2 169 47.9
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 1.8e-37 160.2 170 49.4
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 1.8e-37 160.2 170 49.4
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 2.4e-37 159.8 171 48.0
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 2.4e-37 159.8 168 50.6
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 2.4e-37 159.8 169 51.5
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 3.1e-37 159.5 172 46.5
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 3.1e-37 159.5 145 51.7
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 3.1e-37 159.5 168 47.6
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 4.1e-37 159.1 161 48.4
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 4.1e-37 159.1 169 49.1
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 5.3e-37 158.7 146 52.7
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 5.3e-37 158.7 176 46.6
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 7.0e-37 158.3 149 52.3
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 7.0e-37 158.3 171 47.4
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 9.1e-37 157.9 161 49.7
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 9.1e-37 157.9 168 47.0
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 9.1e-37 157.9 168 47.6
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 1.2e-36 157.5 165 51.5
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 1.2e-36 157.5 173 45.1
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 1.2e-36 157.5 176 46.0
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 2.0e-36 156.8 171 47.4
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 2.0e-36 156.8 173 45.7
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 2.6e-36 156.4 162 48.8
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 2.6e-36 156.4 162 48.8
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 2.6e-36 156.4 173 45.7
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 3.5e-36 156.0 146 52.1
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 4.5e-36 155.6 173 45.1
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 4.5e-36 155.6 169 46.7
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 5.9e-36 155.2 167 47.3
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 7.7e-36 154.8 143 51.0
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 1.0e-35 154.5 170 48.8
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 1.0e-35 154.5 162 48.1
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 1.0e-35 154.5 162 48.1
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.0e-35 154.5 168 47.0
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 1.3e-35 154.1 161 48.4
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 1.7e-35 153.7 159 47.8
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 1.7e-35 153.7 168 47.0
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 1.7e-35 153.7 168 48.2
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 2.9e-35 152.9 177 44.1
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 3.8e-35 152.5 181 45.3
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 5.0e-35 152.1 185 45.9
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 5.0e-35 152.1 160 49.4
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 6.5e-35 151.8 183 45.4
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 8.5e-35 151.4 171 46.2
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 1.1e-34 151.0 144 50.7
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 2.5e-34 149.8 126 59.5
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 3.2e-34 149.4 170 46.5
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 4.2e-34 149.1 165 43.6
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 5.5e-34 148.7 186 43.0
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 7.2e-34 148.3 145 49.7
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 1.2e-33 147.5 165 44.8
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 2.3e-32 143.3 180 42.8
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 7.5e-31 138.3 182 44.0
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.7e-30 137.1 177 45.8
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 2.8e-30 136.3 202 39.6
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 6.3e-30 135.2 166 44.0
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 6.3e-30 135.2 142 48.6
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 6.3e-30 135.2 175 41.1
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 1.8e-29 133.7 175 43.4
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 4.1e-29 132.5 138 50.0
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 5.4e-29 132.1 245 35.5
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 7.0e-29 131.7 191 41.4
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 1.1e-26 124.4 131 45.0
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 1.2e-25 120.9 131 46.6
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 1.0e-24 117.9 133 45.1
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 2.0e-23 113.6 116 50.9
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 2.8e-22 109.8 111 49.5
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 3.7e-22 109.4 90 57.8
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 1.0e-19 101.3 114 45.6
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 2.7e-12 76.6 213 27.2
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 2.5e-10 70.1 67 52.2
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 1.2e-07 61.2 52 57.7
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 2.2e-06 57.0 80 41.2


User provided reference genes

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