Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 1.2e-205 719.5 359 100.0
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 5.5e-153 544.7 357 76.5
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 2.6e-78 296.6 383 47.3
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 8.3e-77 291.6 374 46.8
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 6.0e-75 285.4 381 44.9
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 1.3e-74 284.3 372 45.4
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 6.6e-74 282.0 371 45.3
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 8.6e-74 281.6 362 46.7
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 1.1e-73 281.2 373 44.0
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.5e-73 280.8 373 45.6
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.9e-73 280.4 372 45.2
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 2.5e-73 280.0 360 46.7
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 3.3e-73 279.6 373 44.8
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 7.3e-73 278.5 374 45.2
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 9.5e-73 278.1 359 44.8
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 1.2e-72 277.7 374 44.7
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 1.2e-72 277.7 371 45.8
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 1.6e-72 277.3 378 43.1
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 1.6e-72 277.3 383 46.0
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 1.6e-72 277.3 372 45.4
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.8e-72 276.6 373 45.6
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.8e-72 276.6 373 45.0
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 3.6e-72 276.2 360 45.6
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 8.1e-72 275.0 373 45.3
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 8.1e-72 275.0 373 45.3
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 1.1e-71 274.6 374 46.0
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.1e-71 274.6 372 46.2
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 1.1e-71 274.6 358 45.0
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 2.4e-71 273.5 374 44.7
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 2.4e-71 273.5 367 43.9
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 3.1e-71 273.1 371 44.2
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 3.1e-71 273.1 371 44.2
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 4.0e-71 272.7 375 46.4
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 5.2e-71 272.3 372 44.1
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 5.2e-71 272.3 359 44.6
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 6.8e-71 271.9 375 44.5
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 8.9e-71 271.6 369 43.9
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 1.2e-70 271.2 363 44.6
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 2.6e-70 270.0 376 44.7
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 2.6e-70 270.0 361 44.9
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 2.6e-70 270.0 373 43.2
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 3.4e-70 269.6 363 44.6
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 4.4e-70 269.2 373 43.4
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 4.4e-70 269.2 377 44.8
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 5.8e-70 268.9 363 45.2
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 7.6e-70 268.5 360 45.0
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.3e-69 267.7 369 44.4
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 2.2e-69 266.9 360 44.7
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 2.2e-69 266.9 362 44.8
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 3.8e-69 266.2 373 43.7
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 3.8e-69 266.2 361 44.6
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 3.8e-69 266.2 360 44.7
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 6.4e-69 265.4 371 43.7
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 8.4e-69 265.0 365 44.4
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 8.4e-69 265.0 363 43.8
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 1.1e-68 264.6 362 45.0
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.4e-68 263.5 373 42.4
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 3.2e-68 263.1 360 44.2
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 4.2e-68 262.7 373 42.6
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.2e-68 262.7 356 42.4
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 4.2e-68 262.7 356 42.4
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.1e-68 261.9 374 43.6
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 7.1e-68 261.9 383 43.6
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 7.1e-68 261.9 364 44.0
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 9.2e-68 261.5 384 43.2
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.1e-67 260.4 371 43.9
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 2.7e-67 260.0 377 44.6
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 2.7e-67 260.0 374 44.1
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 2.7e-67 260.0 378 42.6
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 7.8e-67 258.5 357 43.7
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 7.8e-67 258.5 360 43.3
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.0e-66 258.1 363 44.6
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 1.3e-66 257.7 367 42.0
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.3e-66 256.9 355 42.5
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 2.3e-66 256.9 380 41.6
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 3.0e-66 256.5 363 44.1
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 3.9e-66 256.1 365 44.1
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 3.9e-66 256.1 380 43.4
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 8.7e-66 255.0 373 43.2
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.5e-65 254.2 373 43.2
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 1.9e-65 253.8 356 44.1
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 3.3e-65 253.1 361 44.3
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 3.3e-65 253.1 370 44.1
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 3.3e-65 253.1 349 41.8
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 4.3e-65 252.7 361 44.3
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 9.6e-65 251.5 361 43.2
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 9.6e-65 251.5 372 40.9
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.6e-64 250.8 361 43.2
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 2.1e-64 250.4 360 43.6
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 2.8e-64 250.0 367 42.2
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 8.1e-64 248.4 361 43.2
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 1.4e-63 247.7 361 42.9
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 1.8e-63 247.3 368 41.3
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 2.4e-63 246.9 371 42.6
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 4.0e-63 246.1 361 42.9
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 4.0e-63 246.1 362 42.0
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 5.3e-63 245.7 372 41.1
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 6.9e-63 245.4 370 40.0
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 9.0e-63 245.0 360 42.2
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 1.5e-62 244.2 360 44.4
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 1.5e-62 244.2 377 42.7
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 2.0e-62 243.8 359 43.2
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 2.0e-62 243.8 381 44.6
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 2.0e-62 243.8 377 41.6
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.6e-62 243.4 370 40.0
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 2.6e-62 243.4 368 41.0
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 4.4e-62 242.7 361 42.9
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 4.4e-62 242.7 358 43.0
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 4.4e-62 242.7 358 43.0
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 9.9e-62 241.5 358 42.5
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 9.9e-62 241.5 372 40.6
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 1.3e-61 241.1 353 42.2
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 8.4e-61 238.4 356 41.9
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 1.1e-60 238.0 358 44.1
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 1.9e-60 237.3 349 41.8
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 7.1e-60 235.3 376 41.2
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 9.3e-60 235.0 355 42.5
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 8.7e-58 228.4 359 42.3
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 2.5e-57 226.9 345 41.7
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 4.3e-57 226.1 348 42.0
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 4.8e-56 222.6 358 39.4
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 1.4e-55 221.1 366 37.7
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 1.8e-55 220.7 355 39.7
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 3.1e-55 219.9 365 40.5
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 6.9e-55 218.8 375 38.1
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 6.9e-55 218.8 349 40.4
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 2.0e-54 217.2 370 40.8
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 5.8e-54 215.7 355 40.8
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 5.8e-54 215.7 351 38.5
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 6.4e-53 212.2 346 40.5
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 8.4e-53 211.8 443 33.9
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 4.2e-52 209.5 168 60.1
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 2.1e-51 207.2 344 41.3
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 7.9e-51 205.3 322 41.3
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.8e-50 204.1 398 38.4
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 3.9e-50 203.0 341 39.3
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 4.3e-49 199.5 367 38.4
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 9.0e-47 191.8 510 30.8
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 2.6e-46 190.3 388 36.1
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.3e-45 188.0 403 33.7
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 1.4e-44 184.5 356 35.4
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 6.0e-43 179.1 161 49.1
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 3.3e-41 173.3 155 52.9
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 9.3e-36 155.2 129 53.5
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 2.2e-29 134.0 367 28.3
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 7.2e-28 129.0 336 32.7
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.3e-25 120.2 336 28.9
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.7e-24 117.9 90 58.9
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.9e-21 107.1 115 45.2
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 3.6e-19 100.1 74 60.8
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 8.8e-18 95.5 282 33.3
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 8.8e-18 95.5 282 33.3
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.7e-17 92.8 146 43.8
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 5.3e-15 86.3 129 45.0
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.2e-14 85.1 174 38.5
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 2.0e-14 84.3 233 36.1
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 2.9e-13 80.5 156 37.2
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 4.2e-12 76.6 226 33.2
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 4.1e-07 60.1 32 71.9


User provided reference genes

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