Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 1.3e-190 669.5 323 100.0
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 9.3e-128 460.7 302 75.5
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 8.8e-110 401.0 302 65.2
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.5e-104 383.6 302 63.2
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 1.5e-104 383.6 302 63.6
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 3.2e-104 382.5 302 60.3
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 7.2e-104 381.3 302 62.3
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 7.2e-104 381.3 302 62.9
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 2.1e-103 379.8 302 61.3
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.0e-102 377.5 241 71.4
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.0e-102 377.5 241 71.4
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.0e-102 377.5 241 71.4
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.0e-102 377.5 241 71.4
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 1.0e-102 377.5 255 68.6
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 1.4e-102 377.1 241 71.4
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 1.4e-102 377.1 241 71.0
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 1.4e-102 377.1 302 61.9
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.4e-102 377.1 302 60.9
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 1.8e-102 376.7 255 69.4
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 2.3e-102 376.3 241 71.4
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 3.0e-102 375.9 258 67.4
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 3.0e-102 375.9 302 59.3
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 4.0e-102 375.6 241 71.0
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 4.0e-102 375.6 302 59.9
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 5.2e-102 375.2 237 72.2
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 5.2e-102 375.2 302 60.6
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 5.2e-102 375.2 241 71.8
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 6.7e-102 374.8 302 60.6
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 6.7e-102 374.8 255 67.8
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 8.8e-102 374.4 303 60.4
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 8.8e-102 374.4 302 60.9
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 1.2e-101 374.0 241 71.0
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 2.6e-101 372.9 252 67.9
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 2.6e-101 372.9 302 59.9
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.6e-101 372.9 276 64.9
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 3.3e-101 372.5 299 61.9
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 4.4e-101 372.1 254 66.1
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 4.4e-101 372.1 255 69.4
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 4.4e-101 372.1 302 60.3
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 7.5e-101 371.3 302 59.6
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 7.5e-101 371.3 302 59.3
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 7.5e-101 371.3 241 70.1
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 7.5e-101 371.3 302 60.3
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 9.7e-101 370.9 304 59.9
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 9.7e-101 370.9 302 59.9
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 1.3e-100 370.5 302 59.3
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 1.3e-100 370.5 302 59.3
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 1.7e-100 370.2 302 59.3
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.7e-100 370.2 302 59.6
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 2.2e-100 369.8 237 71.3
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.8e-100 369.4 256 67.6
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 2.8e-100 369.4 302 61.3
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 3.7e-100 369.0 237 69.2
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 3.7e-100 369.0 255 67.5
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 4.8e-100 368.6 241 71.0
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 4.8e-100 368.6 255 67.5
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 6.3e-100 368.2 241 70.1
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 6.3e-100 368.2 302 58.6
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 8.2e-100 367.9 302 58.9
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 8.2e-100 367.9 302 59.6
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 8.2e-100 367.9 237 71.7
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.1e-99 367.5 241 70.5
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-99 367.5 255 67.1
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.1e-99 367.5 241 69.7
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.1e-99 367.5 302 60.3
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.4e-99 367.1 302 58.3
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 2.4e-99 366.3 258 66.7
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 2.4e-99 366.3 237 70.9
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 2.4e-99 366.3 302 59.9
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 2.4e-99 366.3 302 59.3
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 2.4e-99 366.3 302 59.9
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 3.1e-99 365.9 302 57.6
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 4.1e-99 365.5 301 59.5
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 5.3e-99 365.2 241 69.7
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 5.3e-99 365.2 241 69.7
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 5.3e-99 365.2 241 68.0
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 5.3e-99 365.2 241 70.1
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 7.0e-99 364.8 241 69.7
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 7.0e-99 364.8 302 59.6
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 1.2e-98 364.0 241 67.6
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.2e-98 364.0 241 68.5
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.5e-98 362.5 241 69.3
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 3.5e-98 362.5 241 68.9
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 5.9e-98 361.7 237 70.9
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.0e-97 360.9 302 59.6
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.0e-97 360.9 302 58.6
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.0e-97 360.9 302 58.6
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.0e-97 360.9 302 58.6
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 2.2e-97 359.8 327 56.6
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 2.2e-97 359.8 237 68.8
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 2.9e-97 359.4 306 57.2
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 2.9e-97 359.4 259 65.3
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.9e-97 359.4 241 67.2
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 2.9e-97 359.4 241 66.8
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 2.9e-97 359.4 241 68.5
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 3.8e-97 359.0 302 58.3
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.1e-96 357.5 257 62.6
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 3.2e-96 355.9 237 69.6
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 5.5e-96 355.1 241 66.8
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 9.4e-96 354.4 255 64.3
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 2.7e-95 352.8 247 67.6
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 4.7e-95 352.1 275 61.8
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 1.5e-93 347.1 304 57.2
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 1.7e-92 343.6 329 54.1
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.8e-92 342.8 241 65.1
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 8.3e-92 341.3 241 62.7
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 4.1e-91 339.0 303 54.1
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 7.7e-90 334.7 241 63.5
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 1.5e-88 330.5 241 62.2
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 4.2e-88 328.9 302 53.0
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 2.8e-87 326.2 300 51.0
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 2.8e-87 326.2 243 61.3
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.0e-86 324.3 356 49.7
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 1.8e-86 323.6 304 53.9
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 4.9e-84 315.5 334 48.5
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.0e-82 310.1 344 44.8
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 3.3e-80 302.8 183 75.4
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 1.6e-79 300.4 328 51.5
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 1.4e-78 297.4 237 56.5
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 1.7e-73 280.4 289 53.3
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 4.3e-72 275.8 164 75.6
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 1.1e-67 261.2 195 61.0
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.2e-66 257.7 302 45.0
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.1e-64 251.1 236 52.1
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.5e-61 240.7 185 60.0
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 2.1e-55 220.3 153 66.0
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 5.8e-45 185.7 148 54.7
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.4e-43 181.0 118 69.5
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 1.9e-40 170.6 111 71.2
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 3.6e-39 166.4 107 70.1
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 3.3e-32 143.3 238 36.6
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 6.2e-31 139.0 89 68.5
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 7.1e-27 125.6 75 76.0
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.6e-26 124.4 105 58.1
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 7.4e-24 115.5 89 64.0
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 2.6e-21 107.1 159 42.1
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.5e-16 91.3 57 75.4
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 5.7e-16 89.4 75 58.7
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 1.3e-15 88.2 55 70.9
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 4.1e-14 83.2 50 74.0
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 3.4e-13 80.1 120 40.8
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 6.5e-12 75.9 62 56.5
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 4.6e-10 69.7 55 54.5
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 5.1e-09 66.2 81 43.2


User provided reference genes

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