Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_25740 Physcomitrium patens HOM05D005734 ORTHO05D006990 6.3e-112 407.5 215 100.0
Pp3c1_42750 Physcomitrium patens HOM05D005734 ORTHO05D006990 1.3e-64 250.4 219 68.9
Mapoly0166s0009 Marchantia polymorpha HOM05D005734 ORTHO05D006990 3.8e-32 142.5 146 51.4
Peaxi162Scf00083g00086 Petunia axillaris HOM05D005734 ORTHO05D006990 4.9e-32 142.1 202 41.6
Solyc02g084220.3 Solanum lycopersicum HOM05D005734 ORTHO05D006990 5.4e-31 138.7 196 40.3
Sopen02g028960 Solanum pennellii HOM05D005734 ORTHO05D006990 5.4e-31 138.7 196 40.3
Ciclev10026469m.g Citrus clementina HOM05D005734 ORTHO05D006990 9.2e-31 137.9 217 39.6
Dinv33615 Davidia involucrata HOM05D005734 ORTHO05D006990 2.1e-30 136.7 177 44.6
SalBow3G4629 Salvia bowleyana HOM05D005734 ORTHO05D006990 2.1e-30 136.7 182 41.2
Manes.02G102700 Manihot esculenta HOM05D005734 ORTHO05D006990 3.5e-30 136.0 216 38.9
TAR376G0390 Trochodendron aralioides HOM05D005734 ORTHO05D006990 4.6e-30 135.6 214 38.8
QL06p033653 Quercus lobata HOM05D005734 ORTHO05D006990 6.0e-30 135.2 194 40.7
Actinidia31004 Actinidia chinensis HOM05D005734 ORTHO05D006990 7.8e-30 134.8 196 39.8
TAR628G0339 Trochodendron aralioides HOM05D005734 ORTHO05D006990 7.8e-30 134.8 215 38.6
CSS0031169 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.0e-29 134.4 202 38.6
Sabra07G0011400 Salix brachista HOM05D005734 ORTHO05D006990 1.0e-29 134.4 216 38.9
MD02G1134200 Malus domestica HOM05D005734 ORTHO05D006990 2.3e-29 133.3 204 40.7
MSTRG.2698 Avicennia marina HOM05D005734 ORTHO05D006990 3.9e-29 132.5 182 41.2
PGSC0003DMG400003554 Solanum tuberosum HOM05D005734 ORTHO05D006990 6.6e-29 131.7 219 37.4
AagrBONN_evm.TU.Sc2ySwM_117.481 Anthoceros agrestis HOM05D005734 ORTHO05D006990 1.1e-28 131.0 141 50.4
Eucgr.K02152 Eucalyptus grandis HOM05D005734 ORTHO05D006990 1.1e-28 131.0 213 36.6
MD15G1247200 Malus domestica HOM05D005734 ORTHO05D006990 1.1e-28 131.0 204 38.7
Rhsim08G0034500 Rhododendron simsii HOM05D005734 ORTHO05D006990 1.9e-28 130.2 210 37.1
Nitab4.5_0005721g0110 Nicotiana tabacum HOM05D005734 ORTHO05D006990 2.5e-28 129.8 187 41.7
PSO210G7806 Papaver somniferum HOM05D005734 ORTHO05D006990 2.5e-28 129.8 221 35.7
Nn6g32291 Nelumbo nucifera HOM05D005734 ORTHO05D006990 3.3e-28 129.4 192 41.1
Potri.005G116300 Populus trichocarpa HOM05D005734 ORTHO05D006990 3.3e-28 129.4 202 38.1
Gohir.D03G010200 Gossypium hirsutum HOM05D005734 ORTHO05D006990 4.3e-28 129.0 212 36.8
Carub.0008s2820 Capsella rubella HOM05D005734 ORTHO05D006990 7.3e-28 128.3 179 42.5
Lj2C466G2 Lonicera japonica HOM05D005734 ORTHO05D006990 7.3e-28 128.3 208 38.0
ATR0147G004 Amborella trichopoda HOM05D005734 ORTHO05D006990 9.6e-28 127.9 176 40.3
Migut.H01144 Erythranthe guttata HOM05D005734 ORTHO05D006990 2.1e-27 126.7 196 38.3
Lalb_Chr16g0391171 Lupinus albus HOM05D005734 ORTHO05D006990 2.1e-27 126.7 207 36.7
Sp2g30330 Schrenkiella parvula HOM05D005734 ORTHO05D006990 2.1e-27 126.7 180 41.1
COL.COLO4_21933 Corchorus olitorius HOM05D005734 ORTHO05D006990 2.8e-27 126.3 210 37.1
Duzib147G0754 Durio zibethinus HOM05D005734 ORTHO05D006990 2.8e-27 126.3 209 36.8
arahy.Tifrunner.gnm1.ann1.GC558H Arachis hypogaea HOM05D005734 ORTHO05D006990 4.7e-27 125.6 213 36.6
Gorai.003G010600 Gossypium raimondii HOM05D005734 ORTHO05D006990 4.7e-27 125.6 212 35.8
Nitab4.5_0004254g0030 Nicotiana tabacum HOM05D005734 ORTHO05D006990 4.7e-27 125.6 187 41.2
DCAR_017347 Daucus carota HOM05D005734 ORTHO05D006990 8.1e-27 124.8 197 38.6
Thecc.01G021200 Theobroma cacao HOM05D005734 ORTHO05D006990 8.1e-27 124.8 215 35.8
HPP92_018404 Vanilla planifolia HOM05D005734 ORTHO05D006990 8.1e-27 124.8 180 41.7
Cc07_g10570 Coffea canephora HOM05D005734 ORTHO05D006990 1.1e-26 124.4 199 38.2
Glyma.11G075600 Glycine max HOM05D005734 ORTHO05D006990 1.1e-26 124.4 207 37.7
Psat2g155360 Pisum sativum HOM05D005734 ORTHO05D006990 1.1e-26 124.4 206 38.3
AT5G66290 Arabidopsis thaliana HOM05D005734 ORTHO05D006990 1.4e-26 124.0 178 41.6
Medtr5g021750 Medicago truncatula HOM05D005734 ORTHO05D006990 2.4e-26 123.2 206 37.4
A07p17570 Brassica napus HOM05D005734 ORTHO05D006990 4.0e-26 122.5 181 41.4
Ca_24908_v3 Cicer arietinum L. HOM05D005734 ORTHO05D006990 4.0e-26 122.5 206 38.3
Glyma.01G167600 Glycine max HOM05D005734 ORTHO05D006990 4.0e-26 122.5 205 38.5
Gohir.A12G060300 Gossypium hirsutum HOM05D005734 ORTHO05D006990 5.2e-26 122.1 195 37.4
Thhalv10004735m.g Eutrema salsugineum HOM05D005734 ORTHO05D006990 6.9e-26 121.7 189 39.2
Gohir.A02G169800 Gossypium hirsutum HOM05D005734 ORTHO05D006990 6.9e-26 121.7 176 39.8
TPR.G2344 Trifolium pratense HOM05D005734 ORTHO05D006990 6.9e-26 121.7 206 37.9
Zm00001eb055930 Zea mays HOM05D005734 ORTHO05D006990 8.9e-26 121.3 187 39.0
FAN19G0086 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.2e-25 120.9 176 39.8
Phvul.002G110400 Phaseolus vulgaris HOM05D005734 ORTHO05D006990 2.6e-25 119.8 177 40.1
Sed0005630 Sechium edule HOM05D005734 ORTHO05D006990 2.6e-25 119.8 204 35.3
FvH4_1g12000 Fragaria vesca HOM05D005734 ORTHO05D006990 3.4e-25 119.4 176 39.8
Os03g0727100 Oryza sativa ssp. japonica HOM05D005734 ORTHO05D006990 3.4e-25 119.4 210 39.5
EL10Ac3g07303 Beta vulgaris HOM05D005734 ORTHO05D006990 4.4e-25 119.0 199 36.7
Lsat_1_v5_gn_3_73980 Lactuca sativa HOM05D005734 ORTHO05D006990 4.4e-25 119.0 197 37.6
Sabra05G0095300 Salix brachista HOM05D005734 ORTHO05D006990 4.4e-25 119.0 178 39.3
THA.LOC104819182 Tarenaya hassleriana HOM05D005734 ORTHO05D006990 5.8e-25 118.6 188 38.8
AL8G45230 Arabidopsis lyrata HOM05D005734 ORTHO05D006990 7.6e-25 118.2 179 39.7
RcHm_v2.0_Chr2g0099641 Rosa chinensis HOM05D005734 ORTHO05D006990 7.6e-25 118.2 176 39.8
GSVIVG01018804001 Vitis vinifera HOM05D005734 ORTHO05D006990 9.9e-25 117.9 215 35.8
BcaC06g34694 Brassica carinata HOM05D005734 ORTHO05D006990 1.3e-24 117.5 182 40.1
C07p25530 Brassica napus HOM05D005734 ORTHO05D006990 1.3e-24 117.5 182 40.1
BolC7t43073H Brassica oleracea HOM05D005734 ORTHO05D006990 1.3e-24 117.5 182 40.1
CiPaw.08G133400 Carya illinoinensis HOM05D005734 ORTHO05D006990 1.3e-24 117.5 177 41.2
CsaV3_4G005730 Cucumis sativus L. HOM05D005734 ORTHO05D006990 1.3e-24 117.5 204 33.3
Aqoxy4G02678 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 1.7e-24 117.1 203 36.0
BcaB02g10036 Brassica carinata HOM05D005734 ORTHO05D006990 1.7e-24 117.1 182 40.1
HanXRQChr15g0482851 Helianthus annuus HOM05D005734 ORTHO05D006990 1.7e-24 117.1 191 38.7
TWI09G0878 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.7e-24 117.1 177 40.7
VMungo1215G0268 Vigna mungo HOM05D005734 ORTHO05D006990 1.7e-24 117.1 177 39.5
Cpa.g.sc6.229 Carica papaya HOM05D005734 ORTHO05D006990 2.2e-24 116.7 179 40.8
ClCG07G008420 Citrullus lanatus HOM05D005734 ORTHO05D006990 2.9e-24 116.3 179 36.9
Aa31LG1G14770 Aethionema arabicum HOM05D005734 ORTHO05D006990 3.8e-24 115.9 199 37.2
Aqoxy4G02673 Aquilegia oxysepala HOM05D005734 ORTHO05D006990 4.9e-24 115.5 203 35.5
MBI05_g26512_MAGBIO Magnolia biondii HOM05D005734 ORTHO05D006990 6.4e-24 115.2 200 37.5
unitig_699.g19712 Utricularia gibba HOM05D005734 ORTHO05D006990 6.4e-24 115.2 181 38.7
C09p11890 Brassica napus HOM05D005734 ORTHO05D006990 1.4e-23 114.0 170 40.0
BolC9t54077H Brassica oleracea HOM05D005734 ORTHO05D006990 1.4e-23 114.0 170 40.0
TWI73G0895 Tripterygium wilfordii HOM05D005734 ORTHO05D006990 1.4e-23 114.0 205 37.1
BcaNung04509 Brassica carinata HOM05D005734 ORTHO05D006990 5.4e-23 112.1 199 37.2
Lj2g0025294 Lotus japonicus HOM05D005734 ORTHO05D006990 5.4e-23 112.1 200 36.5
Ah.03g141620 Amaranthus hybridus HOM05D005734 ORTHO05D006990 7.1e-23 111.7 181 38.7
BcaC04g23120 Brassica carinata HOM05D005734 ORTHO05D006990 7.1e-23 111.7 182 40.1
BcaC04g23124 Brassica carinata HOM05D005734 ORTHO05D006990 7.1e-23 111.7 182 40.1
BcaNung05273 Brassica carinata HOM05D005734 ORTHO05D006990 7.1e-23 111.7 182 40.1
ECA246G4348 Erigeron canadensis HOM05D000013 ORTHO05D000011 9.3e-23 111.3 181 38.1
HanXRQChr16g0531031 Helianthus annuus HOM05D005734 ORTHO05D006990 9.3e-23 111.3 206 37.4
Hund14038 Selenicereus undatus HOM05D005734 ORTHO05D006990 7.8e-22 108.2 214 34.6
SMO228G0004 Selaginella moellendorffii HOM05D005734 ORTHO05D006990 2.3e-21 106.7 110 49.1
Nn5g29268 Nelumbo nucifera HOM05D005734 ORTHO05D006990 1.5e-20 104.0 202 35.6
Sc16g0002040 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.5e-20 104.0 135 43.0
A09p10030 Brassica napus HOM05D005734 ORTHO05D006990 1.6e-19 100.5 209 33.5
Lsat_1_v5_gn_4_152781 Lactuca sativa HOM05D005734 ORTHO05D006990 3.6e-19 99.4 187 36.4
CARHR281420 Cardamine hirsuta HOM05D005734 ORTHO05D006990 4.8e-19 99.0 133 40.6
CSS0021905 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.1e-18 97.8 153 37.9
RcHm_v2.0_Chr5g0080231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.1e-18 97.8 146 40.4
CSS0012385 Camellia sinensis var. sinensis HOM05D005734 ORTHO05D006990 1.4e-18 97.4 153 37.9
RcHm_v2.0_Chr1g0353231 Rosa chinensis HOM05D005734 ORTHO05D006990 1.8e-18 97.1 146 40.4
Potri.007G014000 Populus trichocarpa HOM05D005734 ORTHO05D006990 2.4e-18 96.7 141 41.1
RcHm_v2.0_Chr0c39g0503221 Rosa chinensis HOM05D005734 ORTHO05D006990 2.4e-18 96.7 136 41.2
arahy.Tifrunner.gnm1.ann1.DFQ3ES Arachis hypogaea HOM05D005734 ORTHO05D006990 3.4e-17 92.8 132 38.6
Cfa006957 Carpinus fangiana HOM05D005734 ORTHO05D006990 3.4e-17 92.8 120 41.7
QL06p033647 Quercus lobata HOM05D005734 ORTHO05D006990 1.3e-16 90.9 112 42.0
Prupe.7G166600 Prunus persica HOM05D005734 ORTHO05D006990 1.7e-16 90.5 207 31.4
MELO3C016376.2 Cucumis melo HOM05D005734 ORTHO05D006990 2.9e-16 89.7 140 35.7
SGA_v2.0_scaffold137G35098 Striga asiatica HOM05D005734 ORTHO05D006990 3.8e-16 89.4 111 42.3
Atru.chr3.782 Acer truncatum HOM05D005734 ORTHO05D006990 6.4e-16 88.6 163 35.6
ATR0876G001 Amborella trichopoda HOM05D005734 ORTHO05D006990 1.1e-15 87.8 103 45.6
FAN26G0019 Fragaria x ananassa HOM05D005734 ORTHO05D006990 5.4e-15 85.5 176 31.8
PSO170G3799 Papaver somniferum HOM05D005734 ORTHO05D006990 2.1e-14 83.6 125 36.0
vmacro18422 Vaccinium macrocarpon HOM05D005734 ORTHO05D006990 4.6e-14 82.4 144 33.3
AUR62018084 Chenopodium quinoa HOM05D005734 ORTHO05D006990 6.0e-14 82.0 129 36.4
FAN23G1819 Fragaria x ananassa HOM05D005734 ORTHO05D006990 1.3e-13 80.9 167 35.9
CDE05G1720 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 5.6e-12 75.5 176 35.2
Gorai.008G063500 Gossypium raimondii HOM05D005734 ORTHO05D006990 1.3e-11 74.3 118 35.6
CDE11G0627 Ceratophyllum demersum HOM05D005734 ORTHO05D006990 2.1e-11 73.6 89 41.6
Sc16g0006390 Simmondsia chinensis HOM05D005734 ORTHO05D006990 1.3e-08 64.3 74 47.3
Lsat_1_v5_gn_4_38760 Lactuca sativa HOM05D005734 ORTHO05D006990 3.8e-08 62.8 126 34.1
Sc18g0002570 Simmondsia chinensis HOM05D005734 ORTHO05D006990 3.8e-08 62.8 74 45.9
Haze_03794 Corylus avellana HOM05D005734 ORTHO05D006990 6.4e-08 62.0 67 46.3
FAN28G1963 Fragaria x ananassa HOM05D005734 ORTHO05D006990 2.4e-07 60.1 102 35.3
Sc09g0006730 Simmondsia chinensis HOM05D005734 ORTHO05D006990 7.1e-07 58.5 74 44.6
Medtr5g021780 Medicago truncatula HOM05D005734 ORTHO05D006990 4.6e-06 55.8 102 31.4


User provided reference genes

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