Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_25540 Physcomitrium patens HOM05D003613 ORTHO05D004055 1.8e-51 205.7 105 100.0
Pp3c10_10840 Physcomitrium patens HOM05D003613 ORTHO05D004055 4.7e-36 154.5 104 78.8
Zm00001eb177920 Zea mays HOM05D003613 ORTHO05D004055 4.5e-15 84.7 78 55.1
Zm00001eb412000 Zea mays HOM05D003613 ORTHO05D004055 7.7e-15 84.0 79 57.0
ATR0580G444 Amborella trichopoda HOM05D003613 ORTHO05D004055 5.5e-13 77.8 96 47.9
arahy.Tifrunner.gnm1.ann1.M9YY7V Arachis hypogaea HOM05D003613 ORTHO05D004055 1.2e-12 76.6 67 58.2
TAR383G0763 Trochodendron aralioides HOM05D003613 ORTHO05D004055 1.2e-12 76.6 80 48.8
TWI75G1756 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 1.6e-12 76.3 94 47.9
ATR0068G040 Amborella trichopoda HOM05D003613 ORTHO05D004055 2.1e-12 75.9 79 53.2
arahy.Tifrunner.gnm1.ann1.DB50AT Arachis hypogaea HOM05D003613 ORTHO05D004055 2.1e-12 75.9 67 58.2
Os08g0266200 Oryza sativa ssp. japonica HOM05D003613 ORTHO05D004055 2.7e-12 75.5 80 53.8
Gohir.D06G146000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 3.6e-12 75.1 82 48.8
Gorai.010G170200 Gossypium raimondii HOM05D003613 ORTHO05D004055 3.6e-12 75.1 82 48.8
TWI31G1088 Tripterygium wilfordii HOM05D003613 ORTHO05D004055 3.6e-12 75.1 96 49.0
ClCG09G003430 Citrullus lanatus HOM05D003613 ORTHO05D004055 6.1e-12 74.3 86 46.5
Dinv21437 Davidia involucrata HOM05D003613 ORTHO05D004055 6.1e-12 74.3 83 50.6
Gohir.A06G141700 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.1e-12 74.3 82 48.8
MELO3C029246.2 Cucumis melo HOM05D003613 ORTHO05D004055 8.0e-12 73.9 86 48.8
Gohir.A10G049000 Gossypium hirsutum HOM05D003613 ORTHO05D004055 8.0e-12 73.9 82 50.0
Gohir.D10G049600 Gossypium hirsutum HOM05D003613 ORTHO05D004055 8.0e-12 73.9 82 50.0
Gorai.011G053100 Gossypium raimondii HOM05D003613 ORTHO05D004055 8.0e-12 73.9 82 50.0
Sed0021976 Sechium edule HOM05D003613 ORTHO05D004055 8.0e-12 73.9 86 48.8
MSTRG.11218 Avicennia marina HOM05D003613 ORTHO05D004055 1.0e-11 73.6 89 51.7
CsaV3_7G031790 Cucumis sativus L. HOM05D003613 ORTHO05D004055 1.0e-11 73.6 86 48.8
Duzib235G1294 Durio zibethinus HOM05D003613 ORTHO05D004055 1.0e-11 73.6 82 47.6
MSTRG.22838 Avicennia marina HOM05D003613 ORTHO05D004055 1.4e-11 73.2 89 48.3
Lalb_Chr20g0122601 Lupinus albus HOM05D003613 ORTHO05D004055 1.4e-11 73.2 73 50.7
Phvul.002G218400 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 1.4e-11 73.2 70 54.3
Cfa004173 Carpinus fangiana HOM05D003613 ORTHO05D004055 2.3e-11 72.4 84 51.2
AUR62018676 Chenopodium quinoa HOM05D003613 ORTHO05D004055 2.3e-11 72.4 83 54.2
Ah.12g055300 Amaranthus hybridus HOM05D003613 ORTHO05D004055 3.0e-11 72.0 84 54.8
Phvul.006G195900 Phaseolus vulgaris HOM05D003613 ORTHO05D004055 3.0e-11 72.0 65 53.8
SEGI_37804 Sequoiadendron giganteum HOM05D003613 ORTHO05D004055 3.0e-11 72.0 88 47.7
unitig_22.g6276 Utricularia gibba HOM05D003613 ORTHO05D004055 3.0e-11 72.0 88 45.5
Medtr2g010880 Medicago truncatula HOM05D003613 ORTHO05D004055 5.2e-11 71.2 73 53.4
Thecc.06G133700 Theobroma cacao HOM05D003613 ORTHO05D004055 5.2e-11 71.2 83 48.2
TPR.G13916 Trifolium pratense HOM05D003613 ORTHO05D004055 5.2e-11 71.2 78 46.2
Migut.D01149 Erythranthe guttata HOM05D003613 ORTHO05D004055 6.8e-11 70.9 88 47.7
Ciclev10026842m.g Citrus clementina HOM05D003613 ORTHO05D004055 8.8e-11 70.5 82 50.0
ECA232G3259 Erigeron canadensis HOM05D003613 ORTHO05D004055 8.8e-11 70.5 85 43.5
Oeu051549.1 Olea europaea HOM05D003613 ORTHO05D004055 8.8e-11 70.5 89 49.4
arahy.Tifrunner.gnm1.ann1.T22GZM Arachis hypogaea HOM05D003613 ORTHO05D004055 1.2e-10 70.1 70 54.3
MSTRG.9389 Avicennia marina HOM05D003613 ORTHO05D004055 1.2e-10 70.1 87 48.3
Potri.001G038200 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.2e-10 70.1 83 45.8
Potri.001G038750 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.2e-10 70.1 83 45.8
Sabra03G0136500 Salix brachista HOM05D003613 ORTHO05D004055 1.2e-10 70.1 84 50.0
SGA_v2.0_scaffold74G24606 Striga asiatica HOM05D003613 ORTHO05D004055 1.2e-10 70.1 91 46.2
vmacro19080 Vaccinium macrocarpon HOM05D003613 ORTHO05D004055 1.2e-10 70.1 104 47.1
CSS0042010 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 1.5e-10 69.7 102 47.1
CiPaw.01G052100 Carya illinoinensis HOM05D003613 ORTHO05D004055 1.5e-10 69.7 81 48.1
Haze_16413 Corylus avellana HOM05D003613 ORTHO05D004055 1.5e-10 69.7 82 52.4
Haze_16416 Corylus avellana HOM05D003613 ORTHO05D004055 1.5e-10 69.7 82 52.4
Rhsim08G0202400 Rhododendron simsii HOM05D003613 ORTHO05D004055 1.5e-10 69.7 104 44.2
SGA_v2.0_scaffold515G52657 Striga asiatica HOM05D003613 ORTHO05D004055 1.5e-10 69.7 91 44.0
QL12p003368 Quercus lobata HOM05D003613 ORTHO05D004055 2.0e-10 69.3 80 53.8
SalBow1G4637 Salvia bowleyana HOM05D003613 ORTHO05D004055 2.0e-10 69.3 96 44.8
VMungo0540G1949 Vigna mungo HOM05D003613 ORTHO05D004055 2.0e-10 69.3 65 52.3
AagrBONN_evm.TU.Sc2ySwM_368.2820 Anthoceros agrestis HOM05D003613 ORTHO05D004055 2.6e-10 68.9 70 50.0
arahy.Tifrunner.gnm1.ann1.XPM13Z Arachis hypogaea HOM05D003613 ORTHO05D004055 2.6e-10 68.9 70 52.9
EL10Ac5g12047 Beta vulgaris HOM05D003613 ORTHO05D004055 2.6e-10 68.9 82 56.1
Haze_15237 Corylus avellana HOM05D003613 ORTHO05D004055 2.6e-10 68.9 82 51.2
Potri.001G040300 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.6e-10 68.9 85 47.1
TAR626G0045 Trochodendron aralioides HOM05D003147 ORTHO05D004055 2.6e-10 68.9 79 54.4
Duzib160G0323 Durio zibethinus HOM05D003613 ORTHO05D004055 3.4e-10 68.6 85 42.4
Glyma.15G063700 Glycine max HOM05D003613 ORTHO05D004055 3.4e-10 68.6 65 52.3
Sabra03G0136400 Salix brachista HOM05D003613 ORTHO05D004055 3.4e-10 68.6 84 48.8
Atru.chr1.2819 Acer truncatum HOM05D003613 ORTHO05D004055 4.4e-10 68.2 85 50.6
Ca_00210_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 4.4e-10 68.2 75 54.7
Glyma.13G250700 Glycine max HOM05D003613 ORTHO05D004055 4.4e-10 68.2 65 52.3
PGSC0003DMG400014438 Solanum tuberosum HOM05D003613 ORTHO05D004055 4.4e-10 68.2 80 52.5
Ca_18450_v3 Cicer arietinum L. HOM05D003613 ORTHO05D004055 5.7e-10 67.8 86 43.0
Glyma.01G154800 Glycine max HOM05D003613 ORTHO05D004055 5.7e-10 67.8 72 51.4
Rhsim12G0183300 Rhododendron simsii HOM05D003613 ORTHO05D004055 5.7e-10 67.8 86 48.8
Solyc12g042540.1 Solanum lycopersicum HOM05D003613 ORTHO05D004055 5.7e-10 67.8 90 48.9
MD09G1229400 Malus domestica HOM05D003613 ORTHO05D004055 7.5e-10 67.4 81 49.4
ECA247G1662 Erigeron canadensis HOM05D003613 ORTHO05D004055 9.8e-10 67.0 80 45.0
Glyma.08G062200 Glycine max HOM05D003613 ORTHO05D004055 9.8e-10 67.0 86 50.0
Manes.11G070600 Manihot esculenta HOM05D003613 ORTHO05D004055 9.8e-10 67.0 83 50.6
Oeu033454.1 Olea europaea HOM05D003613 ORTHO05D004055 9.8e-10 67.0 87 44.8
SMO307G0037 Selaginella moellendorffii HOM05D000818 ORTHO05D004055 9.8e-10 67.0 84 51.2
Glyma.07G187000 Glycine max HOM05D003613 ORTHO05D004055 1.3e-09 66.6 78 52.6
Lalb_Chr19g0125611 Lupinus albus HOM05D003613 ORTHO05D004055 1.3e-09 66.6 82 50.0
Prupe.3G105500 Prunus persica HOM05D003613 ORTHO05D004055 1.3e-09 66.6 81 46.9
SHI11349 Sapria himalayana HOM05D003613 ORTHO05D004055 1.3e-09 66.6 86 44.2
SMO001G0027 Selaginella moellendorffii HOM05D003613 ORTHO05D004055 1.3e-09 66.6 84 51.2
unitig_8.g3041 Utricularia gibba HOM05D003613 ORTHO05D004055 1.3e-09 66.6 86 45.3
CAN.G1008.14 Capsicum annuum HOM05D003613 ORTHO05D004055 1.7e-09 66.2 87 44.8
ClCG10G012830 Citrullus lanatus HOM05D003613 ORTHO05D004055 1.7e-09 66.2 82 51.2
Duzib192G0866 Durio zibethinus HOM05D003613 ORTHO05D004055 1.7e-09 66.2 82 45.1
FAN02G4453 Fragaria x ananassa HOM05D003613 ORTHO05D004055 1.7e-09 66.2 61 50.8
Sopen03g036670 Solanum pennellii HOM05D003613 ORTHO05D004055 1.7e-09 66.2 87 47.1
Cpa.g.sc68.45 Carica papaya HOM05D003613 ORTHO05D004055 2.2e-09 65.9 81 48.1
Cc04_g05380 Coffea canephora HOM05D003613 ORTHO05D004055 2.2e-09 65.9 86 45.3
Lsat_1_v5_gn_5_9061 Lactuca sativa HOM05D003613 ORTHO05D004055 2.2e-09 65.9 88 42.0
Lj6g0025627 Lotus japonicus HOM05D003613 ORTHO05D004055 2.2e-09 65.9 65 49.2
Psat1g210880 Pisum sativum HOM05D003613 ORTHO05D004055 2.2e-09 65.9 73 52.1
PGSC0003DMG400014217 Solanum tuberosum HOM05D003613 ORTHO05D004055 2.2e-09 65.9 87 47.1
Potri.001G039700 Populus trichocarpa HOM05D003613 ORTHO05D004055 2.8e-09 65.5 53 54.7
QL10p043081 Quercus lobata HOM05D003613 ORTHO05D004055 2.8e-09 65.5 75 56.0
RcHm_v2.0_Chr2g0131951 Rosa chinensis HOM05D003613 ORTHO05D004055 2.8e-09 65.5 81 44.4
Sed0006875 Sechium edule HOM05D003613 ORTHO05D004055 2.8e-09 65.5 85 48.2
Sopen12g021630 Solanum pennellii HOM05D003613 ORTHO05D004055 2.8e-09 65.5 83 51.8
DCAR_025611 Daucus carota HOM05D003613 ORTHO05D004055 3.7e-09 65.1 84 46.4
Nn8g40130 Nelumbo nucifera HOM05D003613 ORTHO05D004055 3.7e-09 65.1 79 45.6
Nitab4.5_0005437g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 3.7e-09 65.1 89 48.3
Sed0012530 Sechium edule HOM05D003613 ORTHO05D004055 3.7e-09 65.1 83 48.2
MELO3C024884.2 Cucumis melo HOM05D003613 ORTHO05D004055 4.9e-09 64.7 82 50.0
CsaV3_3G032670 Cucumis sativus L. HOM05D003613 ORTHO05D004055 4.9e-09 64.7 82 50.0
HanXRQChr04g0100011 Helianthus annuus HOM05D003613 ORTHO05D004055 4.9e-09 64.7 81 44.4
COL.COLO4_30901 Corchorus olitorius HOM05D003613 ORTHO05D004055 6.3e-09 64.3 83 44.6
Gohir.D09G076100 Gossypium hirsutum HOM05D003613 ORTHO05D004055 6.3e-09 64.3 70 48.6
Manes.04G099000 Manihot esculenta HOM05D003613 ORTHO05D004055 6.3e-09 64.3 86 48.8
Eucgr.F03989 Eucalyptus grandis HOM05D003613 ORTHO05D004055 8.3e-09 63.9 89 46.1
Gohir.A09G076160 Gossypium hirsutum HOM05D003613 ORTHO05D004055 8.3e-09 63.9 70 48.6
MD17G1228300 Malus domestica HOM05D003613 ORTHO05D004055 8.3e-09 63.9 61 52.5
Lalb_Chr16g0383261 Lupinus albus HOM05D003613 ORTHO05D004055 1.1e-08 63.5 89 42.7
Aqoxy5G00706 Aquilegia oxysepala HOM05D003613 ORTHO05D004055 1.4e-08 63.2 79 44.3
FAN14G0884 Fragaria x ananassa HOM05D008004 ORTHO05D004055 1.4e-08 63.2 73 47.9
Glyma.15G176700 Glycine max HOM05D003613 ORTHO05D004055 1.4e-08 63.2 65 50.8
Lalb_Chr09g0327111 Lupinus albus HOM05D003613 ORTHO05D004055 1.4e-08 63.2 99 40.4
Mapoly0033s0168 Marchantia polymorpha HOM05D000087 ORTHO05D255883 1.4e-08 63.2 112 38.4
Potri.003G186400 Populus trichocarpa HOM05D003613 ORTHO05D004055 1.4e-08 63.2 84 45.2
GSVIVG01016088001 Vitis vinifera HOM05D003613 ORTHO05D004055 1.4e-08 63.2 86 45.3
Migut.I00632 Erythranthe guttata HOM05D003613 ORTHO05D004055 1.8e-08 62.8 92 42.4
FvH4_6g28090 Fragaria vesca HOM05D008004 ORTHO05D011218 1.8e-08 62.8 53 56.6
Gorai.006G091300 Gossypium raimondii HOM05D003613 ORTHO05D004055 1.8e-08 62.8 70 48.6
TPR.G32634 Trifolium pratense HOM05D003613 ORTHO05D004055 1.8e-08 62.8 85 48.2
Peaxi162Scf00195g00118 Petunia axillaris HOM05D003613 ORTHO05D004055 3.1e-08 62.0 64 53.1
HanXRQChr05g0157501 Helianthus annuus HOM05D003613 ORTHO05D004055 4.1e-08 61.6 88 40.9
AL1G28300 Arabidopsis lyrata HOM05D003613 ORTHO05D004055 5.4e-08 61.2 65 49.2
THA.LOC104813597 Tarenaya hassleriana HOM05D003613 ORTHO05D004055 5.4e-08 61.2 68 51.5
MBI15_g26076_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 7.0e-08 60.8 83 47.0
Lsat_1_v5_gn_4_84900 Lactuca sativa HOM05D003613 ORTHO05D004055 1.2e-07 60.1 85 38.8
MBI14_g16433_MAGBIO Magnolia biondii HOM05D003613 ORTHO05D004055 1.6e-07 59.7 84 44.0
AT1G16170 Arabidopsis thaliana HOM05D003613 ORTHO05D004055 2.0e-07 59.3 65 47.7
Lj4g0025384 Lotus japonicus HOM05D003613 ORTHO05D004055 2.0e-07 59.3 84 41.7
Actinidia36859 Actinidia chinensis HOM05D000338 ORTHO05D003721 3.5e-07 58.5 88 42.0
Aa31LG7G710 Aethionema arabicum HOM05D003613 ORTHO05D004055 3.5e-07 58.5 65 49.2
arahy.Tifrunner.gnm1.ann1.LI0G0T Arachis hypogaea HOM05D003613 ORTHO05D004055 4.5e-07 58.2 66 47.0
Nitab4.5_0002700g0020 Nicotiana tabacum HOM05D003613 ORTHO05D004055 4.5e-07 58.2 68 52.9
CSS0016880 Camellia sinensis var. sinensis HOM05D003613 ORTHO05D004055 5.9e-07 57.8 82 47.6
Nn2g12477 Nelumbo nucifera HOM05D003613 ORTHO05D004055 7.7e-07 57.4 81 42.0
A06p12110 Brassica napus HOM05D003613 ORTHO05D004055 1.0e-06 57.0 83 43.4
BraA06t24380Z Brassica rapa HOM05D003613 ORTHO05D004055 1.0e-06 57.0 83 43.4
ECA246G2284 Erigeron canadensis HOM05D003613 ORTHO05D004055 1.3e-06 56.6 87 40.2
BcaB02g06598 Brassica carinata HOM05D003613 ORTHO05D004055 1.7e-06 56.2 83 43.4
Aa31LG4G1310 Aethionema arabicum HOM05D003613 ORTHO05D004055 2.3e-06 55.8 53 54.7
Carub.0001s1593 Capsella rubella HOM05D003613 ORTHO05D004055 2.9e-06 55.5 65 47.7
BcaB03g14503 Brassica carinata HOM05D003613 ORTHO05D004055 6.6e-06 54.3 83 43.4
C08p44600 Brassica napus HOM05D003613 ORTHO05D004055 6.6e-06 54.3 83 43.4
BolC8t52006H Brassica oleracea HOM05D003613 ORTHO05D004055 6.6e-06 54.3 83 43.4
Thhalv10019378m.g Eutrema salsugineum HOM05D003613 ORTHO05D004055 6.6e-06 54.3 59 50.8
Sp5g34740 Schrenkiella parvula HOM05D003613 ORTHO05D004055 6.6e-06 54.3 53 50.9
DCAR_021377 Daucus carota HOM05D003613 ORTHO05D004055 8.6e-06 53.9 65 43.1


User provided reference genes

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