Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_25130 Physcomitrium patens HOM05D005547 ORTHO05D006887 7.7e-45 183.3 86 100.0
Pp3c10_11190 Physcomitrium patens HOM05D005547 ORTHO05D006887 1.3e-39 166.0 83 91.6
Mapoly0058s0109 Marchantia polymorpha HOM05D005547 ORTHO05D006887 6.1e-26 120.6 72 70.8
Cpa.g.sc2.79 Carica papaya HOM05D005547 ORTHO05D006887 3.0e-25 118.2 88 64.8
Medtr1g112480 Medicago truncatula HOM05D005547 ORTHO05D006887 8.8e-25 116.7 92 60.9
Eucgr.B02628 Eucalyptus grandis HOM05D005547 ORTHO05D006887 1.2e-24 116.3 83 62.7
Phvul.007G019800 Phaseolus vulgaris HOM05D005547 ORTHO05D006887 2.6e-24 115.2 73 69.9
PSO063G0668 Papaver somniferum HOM05D005547 ORTHO05D006887 3.3e-24 114.8 73 68.5
MSTRG.13653 Avicennia marina HOM05D005547 ORTHO05D006887 4.4e-24 114.4 77 66.2
HanXRQChr12g0365891 Helianthus annuus HOM05D005547 ORTHO05D006887 4.4e-24 114.4 86 60.5
Nitab4.5_0003889g0030 Nicotiana tabacum HOM05D005547 ORTHO05D006887 4.4e-24 114.4 73 68.5
Ca_11205_v3 Cicer arietinum L. HOM05D005547 ORTHO05D006887 5.7e-24 114.0 73 68.5
MELO3C022540.2 Cucumis melo HOM05D005547 ORTHO05D006887 5.7e-24 114.0 83 60.2
TPR.G2488 Trifolium pratense HOM05D005547 ORTHO05D006887 5.7e-24 114.0 73 68.5
Lsat_1_v5_gn_5_36641 Lactuca sativa HOM05D005547 ORTHO05D006887 7.5e-24 113.6 84 60.7
Lalb_Chr21g0306901 Lupinus albus HOM05D005547 ORTHO05D006887 7.5e-24 113.6 73 68.5
PSO782G2712 Papaver somniferum HOM05D005547 ORTHO05D006887 7.5e-24 113.6 73 67.1
Psat6g231800 Pisum sativum HOM05D005547 ORTHO05D006887 7.5e-24 113.6 73 67.1
Aa31LG2G7900 Aethionema arabicum HOM05D000012 ORTHO05D000567 9.7e-24 113.2 83 61.4
Lj5g0000051 Lotus japonicus HOM05D005547 ORTHO05D006887 9.7e-24 113.2 80 62.5
ClCG11G000640 Citrullus lanatus HOM05D005547 ORTHO05D006887 1.3e-23 112.8 73 67.1
Atru.chr11.1034 Acer truncatum HOM05D005547 ORTHO05D006887 1.7e-23 112.5 73 67.1
Ciclev10017277m.g Citrus clementina HOM05D005547 ORTHO05D006887 1.7e-23 112.5 73 67.1
Glyma.20G108500 Glycine max HOM05D005547 ORTHO05D006887 1.7e-23 112.5 73 65.8
Lalb_Chr02g0143381 Lupinus albus HOM05D005547 ORTHO05D006887 2.2e-23 112.1 73 65.8
BcaB07g30360 Brassica carinata HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
BcaB07g30717 Brassica carinata HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
BcaB07g30718 Brassica carinata HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
BcaC04g21537 Brassica carinata HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
BcaC06g31254 Brassica carinata HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
BcaC06g31255 Brassica carinata HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
BcaC06g34084 Brassica carinata HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
A09p23740 Brassica napus HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
C07p32870 Brassica napus HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
C09p30580 Brassica napus HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
BolC7t43802H Brassica oleracea HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
BolC9t55922H Brassica oleracea HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
BraA09t37975Z Brassica rapa HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
CANSAT78G0133 Cannabis sativa HOM05D005547 ORTHO05D006887 2.8e-23 111.7 87 60.9
Thhalv10005178m.g Eutrema salsugineum HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
Rhsim09G0081900 Rhododendron simsii HOM05D005547 ORTHO05D006887 2.8e-23 111.7 73 67.1
Sp2g13460 Schrenkiella parvula HOM05D005547 ORTHO05D006887 2.8e-23 111.7 78 64.1
THA.LOC104824108 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 2.8e-23 111.7 73 67.1
TWI77G0558 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 3.7e-23 111.3 72 68.1
TWI77G0905 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 3.7e-23 111.3 72 68.1
AT2G02050 Arabidopsis thaliana HOM05D005547 ORTHO05D006887 6.3e-23 110.5 73 67.1
A06p43870 Brassica napus HOM05D005547 ORTHO05D006887 6.3e-23 110.5 78 62.8
BraA06t27263Z Brassica rapa HOM05D005547 ORTHO05D006887 6.3e-23 110.5 78 62.8
THA.LOC104805110 Tarenaya hassleriana HOM05D005547 ORTHO05D006887 6.3e-23 110.5 73 67.1
TWI53G0286 Tripterygium wilfordii HOM05D005547 ORTHO05D006887 6.3e-23 110.5 73 67.1
AL5G11260 Arabidopsis lyrata HOM05D005547 ORTHO05D006887 8.3e-23 110.2 73 65.8
Carub.0005s0107 Capsella rubella HOM05D005547 ORTHO05D006887 8.3e-23 110.2 73 65.8
Cfa015074 Carpinus fangiana HOM05D005547 ORTHO05D006887 8.3e-23 110.2 73 67.1
CiPaw.06G057000 Carya illinoinensis HOM05D005547 ORTHO05D006887 8.3e-23 110.2 73 67.1
Migut.D01210 Erythranthe guttata HOM05D005547 ORTHO05D006887 8.3e-23 110.2 79 59.5
Nitab4.5_0001091g0130 Nicotiana tabacum HOM05D005547 ORTHO05D006887 8.3e-23 110.2 73 65.8
Oeu024849.1 Olea europaea HOM05D005547 ORTHO05D006887 8.3e-23 110.2 73 65.8
Sed0015045 Sechium edule HOM05D005547 ORTHO05D006887 8.3e-23 110.2 73 64.4
Sed0021722 Sechium edule HOM05D005547 ORTHO05D006887 8.3e-23 110.2 73 64.4
Solyc04g008490.2 Solanum lycopersicum HOM05D005547 ORTHO05D006887 8.3e-23 110.2 73 65.8
Sopen04g003640 Solanum pennellii HOM05D005547 ORTHO05D006887 8.3e-23 110.2 73 65.8
Sc03g0005980 Simmondsia chinensis HOM05D005547 ORTHO05D006887 1.1e-22 109.8 73 65.8
HPP92_022540 Vanilla planifolia HOM05D005547 ORTHO05D006887 1.1e-22 109.8 75 64.0
A02p32590 Brassica napus HOM05D005547 ORTHO05D006887 1.4e-22 109.4 78 62.8
CARHR144680 Cardamine hirsuta HOM05D005547 ORTHO05D006887 1.4e-22 109.4 73 65.8
AUR62003480 Chenopodium quinoa HOM05D005547 ORTHO05D006887 1.4e-22 109.4 79 62.0
Haze_11478 Corylus avellana HOM05D005547 ORTHO05D006887 1.4e-22 109.4 73 67.1
DCAR_002637 Daucus carota HOM05D005547 ORTHO05D006887 1.4e-22 109.4 75 61.3
Manes.15G140700 Manihot esculenta HOM05D005547 ORTHO05D006887 1.8e-22 109.0 73 65.8
Manes.17G091700 Manihot esculenta HOM05D005547 ORTHO05D006887 1.8e-22 109.0 73 65.8
Nitab4.5_0000129g0490 Nicotiana tabacum HOM05D005547 ORTHO05D006887 1.8e-22 109.0 73 64.4
Peaxi162Scf00025g00059 Petunia axillaris HOM05D005547 ORTHO05D006887 2.4e-22 108.6 73 64.4
Prupe.1G340400 Prunus persica HOM05D005547 ORTHO05D006887 2.4e-22 108.6 78 64.1
TAR295G0002 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.4e-22 108.6 73 65.8
TAR622G1295 Trochodendron aralioides HOM05D005547 ORTHO05D006887 2.4e-22 108.6 73 65.8
Ah.03g147190 Amaranthus hybridus HOM05D005547 ORTHO05D006887 3.1e-22 108.2 77 62.3
Hma1.2p1_0068F.1_g037220 Hydrangea macrophylla HOM05D005547 ORTHO05D006887 3.1e-22 108.2 77 61.0
Nn8g41124 Nelumbo nucifera HOM05D005547 ORTHO05D006887 3.1e-22 108.2 73 64.4
Nitab4.5_0000944g0080 Nicotiana tabacum HOM05D005547 ORTHO05D006887 3.1e-22 108.2 68 69.1
Potri.010G099900 Populus trichocarpa HOM05D005547 ORTHO05D006887 3.1e-22 108.2 73 64.4
SGA_v2.0_scaffold65G22157 Striga asiatica HOM05D005547 ORTHO05D006887 3.1e-22 108.2 77 62.3
MBI06_g19635_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 4.1e-22 107.8 73 65.8
MBI06_g29243_MAGBIO Magnolia biondii HOM05D005547 ORTHO05D006887 4.1e-22 107.8 73 65.8
CAN.G458.10 Capsicum annuum HOM05D005547 ORTHO05D006887 5.3e-22 107.5 73 64.4
Duzib251G0939 Durio zibethinus HOM05D005547 ORTHO05D006887 5.3e-22 107.5 73 64.4
Thecc.02G300400 Theobroma cacao HOM05D005547 ORTHO05D006887 5.3e-22 107.5 73 64.4
Duzib268G1003 Durio zibethinus HOM05D005547 ORTHO05D006887 1.2e-21 106.3 73 64.4
MD13G1013300 Malus domestica HOM05D005547 ORTHO05D006887 1.2e-21 106.3 78 62.8
Sabra10G0072400 Salix brachista HOM05D005547 ORTHO05D006887 1.2e-21 106.3 75 61.3
CSS0022085 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 1.6e-21 105.9 73 63.0
CSS0041328 Camellia sinensis var. sinensis HOM05D005547 ORTHO05D006887 1.6e-21 105.9 73 63.0
ECA233G2357 Erigeron canadensis HOM05D005547 ORTHO05D006887 1.6e-21 105.9 85 56.5
PGR142G0372 Punica granatum HOM05D005547 ORTHO05D006887 1.6e-21 105.9 73 64.4
Sabra08G0107500 Salix brachista HOM05D005547 ORTHO05D006887 1.6e-21 105.9 73 64.4
SalBow2G0745 Salvia bowleyana HOM05D005547 ORTHO05D006887 1.6e-21 105.9 82 59.8
MD16G1010200 Malus domestica HOM05D005547 ORTHO05D006887 2.0e-21 105.5 78 62.8
COL.COLO4_27546 Corchorus olitorius HOM05D005547 ORTHO05D006887 2.7e-21 105.1 73 63.0
Gohir.A03G114100 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.7e-21 105.1 73 63.0
Gohir.D02G138400 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.7e-21 105.1 73 63.0
Gohir.D02G138500 Gossypium hirsutum HOM05D005547 ORTHO05D006887 2.7e-21 105.1 73 63.0
Gorai.005G154900 Gossypium raimondii HOM05D005547 ORTHO05D006887 2.7e-21 105.1 73 63.0
Gorai.005G155000 Gossypium raimondii HOM05D005547 ORTHO05D006887 2.7e-21 105.1 73 63.0
ATR0807G170 Amborella trichopoda HOM05D005547 ORTHO05D006887 3.5e-21 104.8 73 61.6
Potri.008G141900 Populus trichocarpa HOM05D005547 ORTHO05D006887 3.5e-21 104.8 73 63.0
unitig_699.g19647 Utricularia gibba HOM05D005547 ORTHO05D006887 3.5e-21 104.8 77 59.7
Duzib248G0639 Durio zibethinus HOM05D005547 ORTHO05D006887 4.5e-21 104.4 73 63.0
QL03p040577 Quercus lobata HOM05D005547 ORTHO05D006887 4.5e-21 104.4 73 63.0
QL03p040948 Quercus lobata HOM05D005547 ORTHO05D006887 4.5e-21 104.4 73 63.0
RcHm_v2.0_Chr4g0445601 Rosa chinensis HOM05D005547 ORTHO05D006887 4.5e-21 104.4 77 61.0
MSTRG.2096 Avicennia marina HOM05D005547 ORTHO05D006887 5.9e-21 104.0 77 59.7
AUR62017789 Chenopodium quinoa HOM05D005547 ORTHO05D006887 5.9e-21 104.0 69 63.8
Zm00001eb002320 Zea mays HOM05D005547 ORTHO05D006887 5.9e-21 104.0 75 60.0
SHI04242 Sapria himalayana HOM05D005547 ORTHO05D006887 1.0e-20 103.2 73 60.3
Cc11_g05010 Coffea canephora HOM05D005547 ORTHO05D006887 1.3e-20 102.8 64 70.3
arahy.Tifrunner.gnm1.ann1.VES97W Arachis hypogaea HOM05D005547 ORTHO05D006887 2.2e-20 102.1 68 61.8
FAN07G0567 Fragaria x ananassa HOM05D005547 ORTHO05D006887 2.2e-20 102.1 78 57.7
FAN17G0411 Fragaria x ananassa HOM05D005547 ORTHO05D006887 2.2e-20 102.1 78 57.7
Ah.02g120230 Amaranthus hybridus HOM05D005547 ORTHO05D006887 2.9e-20 101.7 70 62.9
FvH4_4g35970 Fragaria vesca HOM05D005547 ORTHO05D006887 2.9e-20 101.7 78 57.7
FAN12G1717 Fragaria x ananassa HOM05D005547 ORTHO05D006887 2.9e-20 101.7 78 57.7
CBR_g4786 Chara braunii HOM05D005547 ORTHO05D006887 5.0e-20 100.9 69 60.9
Os03g0129900 Oryza sativa ssp. japonica HOM05D005547 ORTHO05D006887 5.0e-20 100.9 68 64.7
FAN22G0273 Fragaria x ananassa HOM05D005547 ORTHO05D006887 6.5e-20 100.5 78 56.4
MD17G1273300 Malus domestica HOM05D005547 ORTHO05D006887 8.5e-20 100.1 65 66.2
Gohir.A03G114000 Gossypium hirsutum HOM05D005547 ORTHO05D006887 4.2e-19 97.8 71 62.0
SMO356G0087 Selaginella moellendorffii HOM05D005547 ORTHO05D006887 2.2e-15 85.5 65 55.4
Haze_10731 Corylus avellana HOM05D005547 ORTHO05D006887 5.4e-14 80.9 62 58.1
arahy.Tifrunner.gnm1.ann1.FEK9G3 Arachis hypogaea HOM05D005547 ORTHO05D006887 9.1e-14 80.1 62 54.8
MCO06G054 Micromonas commoda HOM05D005547 ORTHO05D006887 2.7e-13 78.6 52 59.6
BcaC03g17109 Brassica carinata HOM05D005547 ORTHO05D006887 2.9e-12 75.1 49 67.3
C02p50170 Brassica napus HOM05D005547 ORTHO05D006887 2.9e-12 75.1 49 67.3
BolC2t11096H Brassica oleracea HOM05D005547 ORTHO05D006887 2.9e-12 75.1 49 67.3
GSVIVG01000609001 Vitis vinifera HOM05D005547 ORTHO05D006887 2.5e-11 72.0 51 62.7
PRCOL_00006370 Prasinoderma coloniale HOM05D005547 ORTHO05D006887 4.2e-11 71.2 70 50.0
Glyma.14G132200 Glycine max HOM05D005547 ORTHO05D006887 1.3e-07 59.7 81 40.7


User provided reference genes

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