Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_2481 Physcomitrium patens HOM05D027689 ORTHO05D018028 2.3e-122 442.2 218 100.0
Pp3c10_2450 Physcomitrium patens HOM05D027689 ORTHO05D018028 3.7e-27 125.9 195 31.3
Mapoly0009s0120 Marchantia polymorpha HOM05D003949 ORTHO05D048756 2.0e-17 93.6 186 32.3
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 3.8e-16 89.4 156 31.4
Mapoly0019s0159 Marchantia polymorpha HOM05D002006 ORTHO05D002128 2.5e-15 86.7 167 28.1
SMO117G0283 Selaginella moellendorffii HOM05D002006 ORTHO05D002128 4.2e-15 85.9 177 28.2
SEGI_06217 Sequoiadendron giganteum HOM05D002006 ORTHO05D002128 2.1e-14 83.6 202 25.2
ATR0559G013 Amborella trichopoda HOM05D002006 ORTHO05D002128 3.6e-14 82.8 166 28.3
ATR0559G210 Amborella trichopoda HOM05D002006 ORTHO05D002128 1.0e-13 81.3 167 28.7
THA.LOC104824348 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 1.4e-13 80.9 168 27.4
ATR1127G055 Amborella trichopoda HOM05D002006 ORTHO05D002128 4.0e-13 79.3 169 24.9
THA.LOC104824594 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 1.2e-12 77.8 158 29.1
Sc11g0005660 Simmondsia chinensis HOM05D002006 ORTHO05D002128 1.5e-12 77.4 189 24.9
SMO174G0126 Selaginella moellendorffii HOM05D003949 ORTHO05D004504 2.6e-12 76.6 141 29.1
HPP92_020334 Vanilla planifolia HOM05D000563 ORTHO05D000536 2.6e-12 76.6 184 26.6
CiPaw.09G167500 Carya illinoinensis HOM05D000563 ORTHO05D000536 4.4e-12 75.9 185 26.5
Thecc.10G172400 Theobroma cacao HOM05D002006 ORTHO05D002128 4.4e-12 75.9 195 24.1
COL.COLO4_38203 Corchorus olitorius HOM05D002006 ORTHO05D002128 5.7e-12 75.5 195 22.6
Haze_17299 Corylus avellana HOM05D002006 ORTHO05D002128 5.7e-12 75.5 170 26.5
Haze_17313 Corylus avellana HOM05D002006 ORTHO05D002128 5.7e-12 75.5 170 26.5
Pp3c14_2500 Physcomitrium patens HOM05D027689 ORTHO05D018028 7.5e-12 75.1 117 29.1
BcaC07g39939 Brassica carinata HOM05D002006 ORTHO05D002128 1.3e-11 74.3 198 21.7
A09p49210 Brassica napus HOM05D002006 ORTHO05D002128 1.3e-11 74.3 198 21.7
C08p31550 Brassica napus HOM05D002006 ORTHO05D002128 1.3e-11 74.3 198 21.7
BolC8t50777H Brassica oleracea HOM05D002006 ORTHO05D002128 1.3e-11 74.3 198 21.7
BraA09t40374Z Brassica rapa HOM05D002006 ORTHO05D002128 1.3e-11 74.3 198 21.7
Gohir.D04G014100 Gossypium hirsutum HOM05D002006 ORTHO05D002128 1.3e-11 74.3 176 23.9
Gorai.012G016700 Gossypium raimondii HOM05D002006 ORTHO05D002128 1.3e-11 74.3 204 25.0
Cfa017708 Carpinus fangiana HOM05D000563 ORTHO05D000536 1.7e-11 73.9 185 26.5
Gorai.012G016500 Gossypium raimondii HOM05D002006 ORTHO05D002128 1.7e-11 73.9 166 24.7
SEGI_23414 Sequoiadendron giganteum HOM05D013743 ORTHO05D017118 1.7e-11 73.9 151 31.1
Gohir.D04G014150 Gossypium hirsutum HOM05D002006 ORTHO05D002128 2.2e-11 73.6 166 25.9
BcaB01g00012 Brassica carinata HOM05D002006 ORTHO05D002128 2.8e-11 73.2 184 23.9
Gohir.D04G014000 Gossypium hirsutum HOM05D002006 ORTHO05D002128 2.8e-11 73.2 166 24.7
Gorai.012G016600 Gossypium raimondii HOM05D002006 ORTHO05D002128 2.8e-11 73.2 166 24.1
Pp3c12_870 Physcomitrium patens HOM05D000563 ORTHO05D000536 3.7e-11 72.8 181 28.2
SEGI_02637 Sequoiadendron giganteum HOM05D013743 ORTHO05D017118 4.8e-11 72.4 111 36.0
SEGI_09468 Sequoiadendron giganteum HOM05D013743 ORTHO05D017118 4.8e-11 72.4 111 36.0
AagrBONN_evm.TU.Sc2ySwM_344.5251 Anthoceros agrestis HOM05D003949 ORTHO05D004504 6.3e-11 72.0 121 29.8
Pp3c14_18250 Physcomitrium patens HOM05D014200 ORTHO05D004504 6.3e-11 72.0 200 24.0
Lalb_Chr17g0347431 Lupinus albus HOM05D000563 ORTHO05D000536 1.1e-10 71.2 190 23.7
Carub.0005s2301 Capsella rubella HOM05D002006 ORTHO05D002128 1.8e-10 70.5 195 22.1
AT3G56230 Arabidopsis thaliana HOM05D002006 ORTHO05D002128 2.4e-10 70.1 198 21.2
QL07p018035 Quercus lobata HOM05D000563 ORTHO05D000536 2.4e-10 70.1 171 26.9
Duzib114G0585 Durio zibethinus HOM05D002006 ORTHO05D002128 4.1e-10 69.3 165 24.8
Aqoxy1G00520 Aquilegia oxysepala HOM05D000563 ORTHO05D000536 5.3e-10 68.9 185 24.3
Manes.10G006400 Manihot esculenta HOM05D002006 ORTHO05D002128 5.3e-10 68.9 206 20.9
AL5G37550 Arabidopsis lyrata HOM05D002006 ORTHO05D002128 9.1e-10 68.2 198 21.2
Haze_20428 Corylus avellana HOM05D000563 ORTHO05D000536 1.2e-09 67.8 185 25.9
PSO384G3568 Papaver somniferum HOM05D002006 ORTHO05D002128 1.2e-09 67.8 182 24.2
Cc02_g05690 Coffea canephora HOM05D002006 ORTHO05D002128 2.0e-09 67.0 159 23.3
unitig_27.g25019 Utricularia gibba HOM05D000563 ORTHO05D000536 2.0e-09 67.0 140 27.9
ECA238G3018 Erigeron canadensis HOM05D002006 ORTHO05D002128 2.7e-09 66.6 186 21.5
CARHR166390 Cardamine hirsuta HOM05D002006 ORTHO05D002128 3.5e-09 66.2 198 20.7
Os04g0625600 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D000536 3.5e-09 66.2 152 28.9
HanXRQChr03g0077751 Helianthus annuus HOM05D002322 ORTHO05D002536 1.3e-08 64.3 165 24.8
HanXRQChr15g0464791 Helianthus annuus HOM05D002322 ORTHO05D002536 1.3e-08 64.3 165 24.8
Dinv11353 Davidia involucrata HOM05D000563 ORTHO05D000536 2.2e-08 63.5 181 24.3
Ciclev10032365m.g Citrus clementina HOM05D002006 ORTHO05D002128 2.9e-08 63.2 151 25.8
Glyma.08G337900 Glycine max HOM05D002322 ORTHO05D002536 3.8e-08 62.8 146 28.8
TPR.G37518 Trifolium pratense HOM05D001333 ORTHO05D001208 3.8e-08 62.8 155 25.2
Cfa001251 Carpinus fangiana HOM05D002006 ORTHO05D002128 5.0e-08 62.4 121 25.6
Glyma.18G072800 Glycine max HOM05D002322 ORTHO05D002536 5.0e-08 62.4 159 27.7
Lsat_1_v5_gn_5_701 Lactuca sativa HOM05D002322 ORTHO05D002536 6.5e-08 62.0 107 30.8
GSVIVG01029981001 Vitis vinifera HOM05D000563 ORTHO05D000536 6.5e-08 62.0 168 25.6
FAN19G3010 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.5e-07 60.8 186 24.7
Prupe.2G185900 Prunus persica HOM05D003949 ORTHO05D004504 1.5e-07 60.8 168 26.2
Rhsim03G0149800 Rhododendron simsii HOM05D002006 ORTHO05D002128 1.5e-07 60.8 146 22.6
FAN26G3181 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.9e-07 60.5 186 24.7
FAN28G2307 Fragaria x ananassa HOM05D000563 ORTHO05D000536 1.9e-07 60.5 186 24.7
unitig_88.g27823 Utricularia gibba HOM05D002006 ORTHO05D002128 1.9e-07 60.5 157 21.0
Cc05_g15470 Coffea canephora HOM05D002322 ORTHO05D002536 2.5e-07 60.1 149 26.2
Phvul.006G059800 Phaseolus vulgaris HOM05D002322 ORTHO05D002536 2.5e-07 60.1 159 27.0
GSVIVG01037518001 Vitis vinifera HOM05D000563 ORTHO05D000536 2.5e-07 60.1 161 24.8
Oeu049454.1 Olea europaea HOM05D002322 ORTHO05D002536 7.2e-07 58.5 164 25.0
Os08g0495500 Oryza sativa ssp. japonica HOM05D002322 ORTHO05D002536 7.2e-07 58.5 167 25.7
Psat4g062920 Pisum sativum HOM05D001333 ORTHO05D001208 7.2e-07 58.5 159 21.4
THA.LOC104810138 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 7.2e-07 58.5 168 25.0
TAR627G0478 Trochodendron aralioides HOM05D002322 ORTHO05D002536 7.2e-07 58.5 109 31.2
VMungo0540G0693 Vigna mungo HOM05D002322 ORTHO05D002536 7.2e-07 58.5 146 28.1
arahy.Tifrunner.gnm1.ann1.4T73SR Arachis hypogaea HOM05D002322 ORTHO05D002536 9.4e-07 58.2 146 28.1
MSTRG.7028 Avicennia marina HOM05D002322 ORTHO05D002536 9.4e-07 58.2 166 25.9
Cfa016932 Carpinus fangiana HOM05D002322 ORTHO05D002536 9.4e-07 58.2 109 29.4
Haze_17301 Corylus avellana HOM05D002006 ORTHO05D002128 9.4e-07 58.2 122 23.0
Lalb_Chr18g0050111 Lupinus albus HOM05D002322 ORTHO05D002536 9.4e-07 58.2 159 27.0
TAR623G1660 Trochodendron aralioides HOM05D000563 ORTHO05D002677 9.4e-07 58.2 168 23.2
HanXRQChr05g0160231 Helianthus annuus HOM05D002322 ORTHO05D002536 1.2e-06 57.8 109 29.4
PGSC0003DMG400022260 Solanum tuberosum HOM05D002322 ORTHO05D002536 1.2e-06 57.8 111 29.7
Duzib213G0142 Durio zibethinus HOM05D002322 ORTHO05D002536 1.6e-06 57.4 109 29.4
Migut.H01730 Erythranthe guttata HOM05D002322 ORTHO05D002536 1.6e-06 57.4 168 26.2
Peaxi162Scf00232g00035 Petunia axillaris HOM05D002322 ORTHO05D002536 1.6e-06 57.4 111 29.7
PGR083G2282 Punica granatum HOM05D002322 ORTHO05D002536 1.6e-06 57.4 109 29.4
THA.LOC104812138 Tarenaya hassleriana HOM05D002006 ORTHO05D002128 1.6e-06 57.4 178 20.2
ECA246G1972 Erigeron canadensis HOM05D002322 ORTHO05D002536 2.1e-06 57.0 109 30.3
Lj6g0012200 Lotus japonicus HOM05D002322 ORTHO05D002536 2.1e-06 57.0 146 28.1
Lalb_Chr20g0115321 Lupinus albus HOM05D002322 ORTHO05D002536 2.1e-06 57.0 159 26.4
Oeu013020.1 Olea europaea HOM05D002322 ORTHO05D002536 2.1e-06 57.0 164 23.8
PSO478G0932 Papaver somniferum HOM05D002322 ORTHO05D002536 2.1e-06 57.0 107 29.9
QL08p001911 Quercus lobata HOM05D002322 ORTHO05D002536 2.1e-06 57.0 109 29.4
COL.COLO4_07757 Corchorus olitorius HOM05D002322 ORTHO05D002536 2.7e-06 56.6 107 29.9
Haze_09889 Corylus avellana HOM05D002322 ORTHO05D002536 2.7e-06 56.6 109 28.4
Lalb_Chr11g0069801 Lupinus albus HOM05D001333 ORTHO05D001208 2.7e-06 56.6 158 22.8
Nitab4.5_0000152g0200 Nicotiana tabacum HOM05D002322 ORTHO05D002536 2.7e-06 56.6 111 29.7
Nitab4.5_0000284g0090 Nicotiana tabacum HOM05D001333 ORTHO05D001208 2.7e-06 56.6 187 20.9
Nitab4.5_0001303g0150 Nicotiana tabacum HOM05D002322 ORTHO05D002536 2.7e-06 56.6 111 29.7
CAN.G623.51 Capsicum annuum HOM05D002322 ORTHO05D002536 3.6e-06 56.2 111 28.8
CDE10G1194 Ceratophyllum demersum HOM05D002322 ORTHO05D002536 3.6e-06 56.2 181 24.3
MBI15_g00871_MAGBIO Magnolia biondii HOM05D002322 ORTHO05D002536 3.6e-06 56.2 159 25.8
SGA_v2.0_scaffold42G15940 Striga asiatica HOM05D002322 ORTHO05D002536 3.6e-06 56.2 109 31.2
arahy.Tifrunner.gnm1.ann1.Z47KWR Arachis hypogaea HOM05D002322 ORTHO05D002536 4.7e-06 55.8 146 28.1
LjContig00081g0014690 Lotus japonicus HOM05D002322 ORTHO05D002536 4.7e-06 55.8 147 27.2
Mapoly0064s0008 Marchantia polymorpha HOM05D003949 ORTHO05D004504 4.7e-06 55.8 175 22.9
SGA_v2.0_scaffold90G27786 Striga asiatica HOM05D001333 ORTHO05D001208 4.7e-06 55.8 160 23.1
FvH4_3g42042 Fragaria vesca HOM05D002322 ORTHO05D002536 6.1e-06 55.5 102 31.4
FAN11G3485 Fragaria x ananassa HOM05D002322 ORTHO05D002536 6.1e-06 55.5 102 31.4
FAN21G3950 Fragaria x ananassa HOM05D002322 ORTHO05D002536 6.1e-06 55.5 102 31.4
Pp3c5_22320 Physcomitrium patens HOM05D002006 ORTHO05D002128 6.1e-06 55.5 122 27.0
RcHm_v2.0_Chr5g0075261 Rosa chinensis HOM05D002322 ORTHO05D002536 6.1e-06 55.5 107 29.0
Prupe.6G031300 Prunus persica HOM05D002322 ORTHO05D002536 8.0e-06 55.1 161 24.8


User provided reference genes

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