Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_2450 Physcomitrium patens HOM05D006500 ORTHO05D008028 6.1e-91 337.4 166 100.0
SMO119G0117 Selaginella moellendorffii HOM05D006500 ORTHO05D008028 5.4e-47 191.4 130 66.2
SEGI_07767 Sequoiadendron giganteum HOM05D006500 ORTHO05D008028 2.7e-46 189.1 150 55.3
ATR0743G133 Amborella trichopoda HOM05D006500 ORTHO05D008028 3.9e-45 185.3 152 55.3
Psat7g120240 Pisum sativum HOM05D006500 ORTHO05D008028 3.9e-45 185.3 157 54.1
CsaV3_6G007030 Cucumis sativus L. HOM05D006500 ORTHO05D008028 4.3e-44 181.8 135 60.7
HanXRQChr14g0433631 Helianthus annuus HOM05D003327 ORTHO05D004535 4.3e-44 181.8 135 61.5
Lsat_1_v5_gn_1_74920 Lactuca sativa HOM05D006500 ORTHO05D008028 5.6e-44 181.4 144 57.6
CAN.G136.13 Capsicum annuum HOM05D006500 ORTHO05D008028 1.3e-43 180.3 148 58.8
COL.COLO4_08138 Corchorus olitorius HOM05D006500 ORTHO05D008028 1.3e-43 180.3 136 58.8
Medtr4g087310 Medicago truncatula HOM05D006500 ORTHO05D008028 1.3e-43 180.3 148 55.4
MELO3C022425.2 Cucumis melo HOM05D006500 ORTHO05D008028 1.6e-43 179.9 135 60.0
ClCG06G001100 Citrullus lanatus HOM05D006500 ORTHO05D008028 3.6e-43 178.7 135 59.3
Thecc.04G165600 Theobroma cacao HOM05D006500 ORTHO05D008028 3.6e-43 178.7 136 57.4
GSVIVG01038143001 Vitis vinifera HOM05D006500 ORTHO05D008028 3.6e-43 178.7 135 59.3
CiPaw.01G170700 Carya illinoinensis HOM05D006500 ORTHO05D008028 4.8e-43 178.3 134 59.0
AL1G15630 Arabidopsis lyrata HOM05D006500 ORTHO05D008028 6.2e-43 177.9 130 59.2
BraA09t42063Z Brassica rapa HOM05D006500 ORTHO05D008028 6.2e-43 177.9 136 57.4
BcaC07g42115 Brassica carinata HOM05D006500 ORTHO05D008028 8.1e-43 177.6 136 57.4
BcaC07g42118 Brassica carinata HOM05D006500 ORTHO05D008028 8.1e-43 177.6 136 57.4
A09p67320 Brassica napus HOM05D006500 ORTHO05D008028 8.1e-43 177.6 136 57.4
C08p51630 Brassica napus HOM05D006500 ORTHO05D008028 8.1e-43 177.6 136 57.4
BolC8t52691H Brassica oleracea HOM05D006500 ORTHO05D008028 8.1e-43 177.6 136 57.4
Sabra19G0108100 Salix brachista HOM05D006500 ORTHO05D008028 8.1e-43 177.6 133 57.9
Glyma.07G207800 Glycine max HOM05D006500 ORTHO05D008028 1.1e-42 177.2 146 56.8
Cpa.g.sc9.364 Carica papaya HOM05D006500 ORTHO05D008028 1.4e-42 176.8 137 58.4
TAR365G1104 Trochodendron aralioides HOM05D006500 ORTHO05D008028 1.4e-42 176.8 138 58.0
AT1G05720 Arabidopsis thaliana HOM05D006500 ORTHO05D008028 1.8e-42 176.4 149 55.0
Carub.0001s0507 Capsella rubella HOM05D006500 ORTHO05D008028 1.8e-42 176.4 130 59.2
CiPaw.02G100400 Carya illinoinensis HOM05D006500 ORTHO05D008028 1.8e-42 176.4 156 53.2
Thhalv10008926m.g Eutrema salsugineum HOM05D006500 ORTHO05D008028 1.8e-42 176.4 137 56.9
FAN17G0772 Fragaria x ananassa HOM05D006500 ORTHO05D008028 1.8e-42 176.4 154 51.3
Nitab4.5_0001586g0010 Nicotiana tabacum HOM05D006500 ORTHO05D008028 1.8e-42 176.4 156 53.2
Sp1g04540 Schrenkiella parvula HOM05D006500 ORTHO05D008028 1.8e-42 176.4 137 56.9
BcaC07g42119 Brassica carinata HOM05D006500 ORTHO05D008028 2.4e-42 176.0 137 56.9
Solyc06g053430.4 Solanum lycopersicum HOM05D006500 ORTHO05D008028 2.4e-42 176.0 163 53.4
Sopen06g018490 Solanum pennellii HOM05D006500 ORTHO05D008028 2.4e-42 176.0 163 53.4
PGSC0003DMG400016334 Solanum tuberosum HOM05D006500 ORTHO05D008028 2.4e-42 176.0 163 53.4
ECA248G2222 Erigeron canadensis HOM05D000003 ORTHO05D008028 3.1e-42 175.6 139 57.6
FAN12G2511 Fragaria x ananassa HOM05D006500 ORTHO05D008028 3.1e-42 175.6 154 50.6
Hma1.2p1_0108F.1_g051720 Hydrangea macrophylla HOM05D006500 ORTHO05D008028 3.1e-42 175.6 150 55.3
Phvul.003G296700 Phaseolus vulgaris HOM05D006500 ORTHO05D008028 3.1e-42 175.6 145 55.2
THA.LOC104800923 Tarenaya hassleriana HOM05D006500 ORTHO05D008028 3.1e-42 175.6 135 57.8
TWI38G1400 Tripterygium wilfordii HOM05D006500 ORTHO05D008028 3.1e-42 175.6 154 52.6
CSS0014789 Camellia sinensis var. sinensis HOM05D006500 ORTHO05D008028 4.0e-42 175.3 140 54.3
Rhsim09G0010200 Rhododendron simsii HOM05D006500 ORTHO05D008028 4.0e-42 175.3 161 50.9
Sed0015541 Sechium edule HOM05D006500 ORTHO05D008028 4.0e-42 175.3 157 52.9
Zm00001eb144900 Zea mays HOM05D006500 ORTHO05D008028 4.0e-42 175.3 149 52.3
Glyma.02G137600 Glycine max HOM05D006500 ORTHO05D008028 5.3e-42 174.9 146 55.5
Potri.019G112100 Populus trichocarpa HOM05D006500 ORTHO05D008028 5.3e-42 174.9 135 56.3
CARHR005240 Cardamine hirsuta HOM05D006500 ORTHO05D008028 6.9e-42 174.5 157 53.5
Duzib268G0518 Durio zibethinus HOM05D006500 ORTHO05D008028 6.9e-42 174.5 134 56.7
Nn1g09644 Nelumbo nucifera HOM05D006500 ORTHO05D008028 6.9e-42 174.5 150 53.3
Sed0014008 Sechium edule HOM05D006500 ORTHO05D008028 6.9e-42 174.5 130 59.2
Aqoxy2G00124 Aquilegia oxysepala HOM05D006500 ORTHO05D008028 9.0e-42 174.1 134 57.5
Peaxi162Scf00180g00116 Petunia axillaris HOM05D006500 ORTHO05D008028 9.0e-42 174.1 153 52.9
Prupe.1G207200 Prunus persica HOM05D006500 ORTHO05D008028 9.0e-42 174.1 139 56.1
RcHm_v2.0_Chr4g0405941 Rosa chinensis HOM05D006500 ORTHO05D008028 9.0e-42 174.1 135 56.3
vmacro00698 Vaccinium macrocarpon HOM05D006500 ORTHO05D008028 9.0e-42 174.1 155 51.6
EL10Ac3g06088 Beta vulgaris HOM05D006500 ORTHO05D008028 1.2e-41 173.7 137 55.5
Ca_18638_v3 Cicer arietinum L. HOM05D006500 ORTHO05D008028 1.2e-41 173.7 134 57.5
Duzib151G0460 Durio zibethinus HOM05D006500 ORTHO05D008028 1.2e-41 173.7 131 58.0
Os01g0894500 Oryza sativa ssp. japonica HOM05D006500 ORTHO05D008028 1.2e-41 173.7 149 50.3
QL10p055774 Quercus lobata HOM05D006500 ORTHO05D008028 1.2e-41 173.7 154 52.6
HPP92_003580 Vanilla planifolia HOM05D006500 ORTHO05D008028 1.2e-41 173.7 131 58.0
Gohir.A05G327700 Gossypium hirsutum HOM05D006500 ORTHO05D008028 1.5e-41 173.3 155 51.6
FvH4_4g10450 Fragaria vesca HOM05D006500 ORTHO05D008028 2.0e-41 172.9 154 50.0
SGA_v2.0_scaffold283G46959 Striga asiatica HOM05D006500 ORTHO05D008028 2.0e-41 172.9 132 59.1
DCAR_023930 Daucus carota HOM05D006500 ORTHO05D008028 2.6e-41 172.6 151 51.7
Manes.11G129200 Manihot esculenta HOM05D006500 ORTHO05D008028 2.6e-41 172.6 135 57.0
SalBow3G2241 Salvia bowleyana HOM05D006500 ORTHO05D008028 2.6e-41 172.6 135 59.3
PSO732G0103 Papaver somniferum HOM05D006500 ORTHO05D008028 3.4e-41 172.2 138 54.3
Gohir.D05G327900 Gossypium hirsutum HOM05D006500 ORTHO05D008028 4.5e-41 171.8 136 55.9
Gorai.009G351800 Gossypium raimondii HOM05D006500 ORTHO05D008028 4.5e-41 171.8 136 55.9
Hund03202 Selenicereus undatus HOM05D006500 ORTHO05D008028 4.5e-41 171.8 136 55.9
arahy.Tifrunner.gnm1.ann1.A3K5YX Arachis hypogaea HOM05D006500 ORTHO05D008028 5.8e-41 171.4 150 54.0
arahy.Tifrunner.gnm1.ann1.SHKR8E Arachis hypogaea HOM05D006500 ORTHO05D008028 5.8e-41 171.4 150 54.0
PSO675G9108 Papaver somniferum HOM05D006500 ORTHO05D008028 5.8e-41 171.4 138 53.6
Potri.013G126900 Populus trichocarpa HOM05D006500 ORTHO05D008028 5.8e-41 171.4 137 54.7
VMungo0251G2572 Vigna mungo HOM05D006500 ORTHO05D008028 7.6e-41 171.0 144 53.5
AUR62002395 Chenopodium quinoa HOM05D006500 ORTHO05D008028 9.9e-41 170.6 154 51.3
Actinidia27113 Actinidia chinensis HOM05D006500 ORTHO05D008028 1.3e-40 170.2 149 51.0
Dinv33205 Davidia involucrata HOM05D006500 ORTHO05D008028 1.3e-40 170.2 135 57.0
Lalb_Chr09g0328101 Lupinus albus HOM05D006500 ORTHO05D008028 1.3e-40 170.2 164 50.6
Lj4g0023361 Lotus japonicus HOM05D006500 ORTHO05D008028 1.7e-40 169.9 130 57.7
MSTRG.4301 Avicennia marina HOM05D006500 ORTHO05D008028 2.2e-40 169.5 134 58.2
MD17G1177800 Malus domestica HOM05D006500 ORTHO05D008028 2.2e-40 169.5 154 51.3
CANSAT56G1821 Cannabis sativa HOM05D006500 ORTHO05D008028 3.8e-40 168.7 137 56.9
AUR62023794 Chenopodium quinoa HOM05D006500 ORTHO05D008028 3.8e-40 168.7 137 53.3
Migut.G01179 Erythranthe guttata HOM05D006500 ORTHO05D008028 3.8e-40 168.7 132 56.8
Eucgr.A00110 Eucalyptus grandis HOM05D006500 ORTHO05D008028 3.8e-40 168.7 130 57.7
Eucgr.A00287 Eucalyptus grandis HOM05D006500 ORTHO05D008028 3.8e-40 168.7 130 57.7
BcaB03g13492 Brassica carinata HOM05D006500 ORTHO05D008028 8.4e-40 167.5 137 54.7
A08p36310 Brassica napus HOM05D006500 ORTHO05D008028 8.4e-40 167.5 137 54.7
BolC8t47013H Brassica oleracea HOM05D006500 ORTHO05D008028 8.4e-40 167.5 137 54.7
CDE04G3295 Ceratophyllum demersum HOM05D006500 ORTHO05D008028 8.4e-40 167.5 149 50.3
Ciclev10022516m.g Citrus clementina HOM05D006500 ORTHO05D008028 8.4e-40 167.5 168 49.4
Nitab4.5_0002544g0040 Nicotiana tabacum HOM05D006500 ORTHO05D008028 8.4e-40 167.5 153 51.6
BcaC07g36846 Brassica carinata HOM05D006500 ORTHO05D008028 1.1e-39 167.2 137 54.7
C08p02210 Brassica napus HOM05D006500 ORTHO05D008028 1.1e-39 167.2 137 54.7
Oeu015723.1 Olea europaea HOM05D006500 ORTHO05D008028 1.4e-39 166.8 132 56.8
Cc03_g14120 Coffea canephora HOM05D006500 ORTHO05D008028 1.9e-39 166.4 164 48.2
MD04G1049100 Malus domestica HOM05D006500 ORTHO05D008028 2.4e-39 166.0 162 49.4
BraA08t35535Z Brassica rapa HOM05D006500 ORTHO05D008028 3.2e-39 165.6 137 54.0
Oeu050336.1 Olea europaea HOM05D006500 ORTHO05D008028 4.2e-39 165.2 149 52.3
Atru.chr4.1419 Acer truncatum HOM05D006500 ORTHO05D008028 3.5e-38 162.2 135 54.1
Sc25g0002800 Simmondsia chinensis HOM05D006500 ORTHO05D008028 4.6e-38 161.8 131 52.7
unitig_46.g18636 Utricularia gibba HOM05D006500 ORTHO05D008028 4.6e-38 161.8 138 54.3
Aa31LG1G8630 Aethionema arabicum HOM05D006500 ORTHO05D008028 9.6e-36 154.1 173 43.9
PGR083G1262 Punica granatum HOM05D006500 ORTHO05D008028 2.8e-35 152.5 155 49.7
FAN12G1276 Fragaria x ananassa HOM05D006500 ORTHO05D008028 6.2e-35 151.4 206 37.9
FAN22G1805 Fragaria x ananassa HOM05D006500 ORTHO05D008028 8.1e-35 151.0 201 38.3
FAN07G0402 Fragaria x ananassa HOM05D006500 ORTHO05D008028 4.0e-34 148.7 201 38.3
Lj3A158T10 Lonicera japonica HOM05D006500 ORTHO05D008028 4.5e-33 145.2 142 50.7
Haze_01362 Corylus avellana HOM05D006500 ORTHO05D008028 1.5e-28 130.2 162 44.4
MBI08_g33171_MAGBIO Magnolia biondii HOM05D006500 ORTHO05D008028 9.6e-28 127.5 98 54.1
TPR.G23526 Trifolium pratense HOM05D006500 ORTHO05D008028 6.2e-27 124.8 96 56.2
BcaC07g42121 Brassica carinata HOM05D006500 ORTHO05D008028 3.1e-26 122.5 136 43.4
Nn1g09666 Nelumbo nucifera HOM05D006500 ORTHO05D008028 2.4e-18 96.3 80 51.2
CBR_g27901 Chara braunii HOM05D006500 ORTHO05D008028 1.2e-14 84.0 128 36.7
Cre01.g038950 Chlamydomonas reinhardtii HOM05D006500 ORTHO05D008028 1.0e-13 80.9 154 32.5
SHI33478 Sapria himalayana HOM05D000105 ORTHO05D000023 8.8e-13 77.8 90 36.7
Ciclev10023175m.g Citrus clementina HOM05D006500 ORTHO05D008028 9.1e-10 67.8 72 41.7
CAN.G701.5 Capsicum annuum HOM05D006500 ORTHO05D008028 1.2e-06 57.4 72 41.7


User provided reference genes

Program Settings