Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_23600 Physcomitrium patens HOM05D006003 ORTHO05D007388 1.5e-192 676.0 341 100.0
Mapoly0214s0005 Marchantia polymorpha HOM05D006003 ORTHO05D007388 5.5e-94 348.6 334 54.2
SMO169G0094 Selaginella moellendorffii HOM05D006003 ORTHO05D007388 3.6e-85 319.3 282 56.7
CBR_g12698 Chara braunii HOM05D006003 ORTHO05D007388 3.7e-82 309.3 335 47.2
MELO3C016117.2 Cucumis melo HOM05D006003 ORTHO05D007388 5.9e-80 302.0 279 53.0
CsaV3_4G008190 Cucumis sativus L. HOM05D006003 ORTHO05D007388 1.3e-79 300.8 279 52.7
ClCG07G010140 Citrullus lanatus HOM05D006003 ORTHO05D007388 3.8e-79 299.3 285 52.3
Dinv13362 Davidia involucrata HOM05D006003 ORTHO05D007388 2.1e-77 293.5 328 48.5
MD11G1270000 Malus domestica HOM05D006003 ORTHO05D007388 4.6e-77 292.4 279 52.7
Manes.15G098700 Manihot esculenta HOM05D006003 ORTHO05D007388 1.8e-76 290.4 301 50.2
Ca_03928_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.9e-76 289.3 306 49.7
Ca_30126_v3 Cicer arietinum L. HOM05D006003 ORTHO05D007388 3.9e-76 289.3 306 49.7
CSS0003385 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 1.5e-75 287.3 279 52.3
CSS0022288 Camellia sinensis var. sinensis HOM05D006003 ORTHO05D007388 2.6e-75 286.6 279 52.3
TPR.G12996 Trifolium pratense HOM05D006003 ORTHO05D007388 2.6e-75 286.6 274 51.8
Medtr2g073350 Medicago truncatula HOM05D006003 ORTHO05D007388 4.4e-75 285.8 279 51.3
ATR0602G094 Amborella trichopoda HOM05D006003 ORTHO05D007388 5.7e-75 285.4 279 52.3
TAR624G1186 Trochodendron aralioides HOM05D006003 ORTHO05D007388 5.7e-75 285.4 278 51.8
Sc16g0007750 Simmondsia chinensis HOM05D006003 ORTHO05D007388 9.7e-75 284.6 280 52.1
Hma1.2p1_0050F.1_g028770 Hydrangea macrophylla HOM05D006003 ORTHO05D007388 1.7e-74 283.9 279 51.6
Glyma.13G264900 Glycine max HOM05D006003 ORTHO05D007388 2.8e-74 283.1 283 51.2
Lalb_Chr20g0109151 Lupinus albus HOM05D006003 ORTHO05D007388 3.7e-74 282.7 274 52.9
Potri.011G104400 Populus trichocarpa HOM05D006003 ORTHO05D007388 4.8e-74 282.3 274 53.3
GSVIVG01014095001 Vitis vinifera HOM05D006003 ORTHO05D007388 4.8e-74 282.3 281 50.9
Sed0005123 Sechium edule HOM05D006003 ORTHO05D007388 6.3e-74 282.0 281 50.9
AUR62019651 Chenopodium quinoa HOM05D006003 ORTHO05D007388 8.2e-74 281.6 301 48.2
Sabra11G0081200 Salix brachista HOM05D006003 ORTHO05D007388 1.1e-73 281.2 274 52.2
Atru.chr2.1967 Acer truncatum HOM05D006003 ORTHO05D007388 2.4e-73 280.0 279 51.3
Atru.chr2.1938 Acer truncatum HOM05D006003 ORTHO05D007388 3.1e-73 279.6 279 51.3
CAN.G375.51 Capsicum annuum HOM05D006003 ORTHO05D007388 3.1e-73 279.6 328 47.0
Glyma.12G234000 Glycine max HOM05D006003 ORTHO05D007388 3.1e-73 279.6 302 50.0
Rhsim06G0211900 Rhododendron simsii HOM05D006003 ORTHO05D007388 3.1e-73 279.6 332 46.1
Cc05_g10700 Coffea canephora HOM05D006003 ORTHO05D007388 6.9e-73 278.5 328 45.7
Ah.04g164020 Amaranthus hybridus HOM05D006003 ORTHO05D007388 1.2e-72 277.7 301 48.5
TAR626G1650 Trochodendron aralioides HOM05D006003 ORTHO05D007388 1.2e-72 277.7 327 47.1
vmacro11973 Vaccinium macrocarpon HOM05D006003 ORTHO05D007388 1.2e-72 277.7 328 45.7
Lj3g0000598 Lotus japonicus HOM05D006003 ORTHO05D007388 1.5e-72 277.3 279 51.6
Lj3g0003080 Lotus japonicus HOM05D006003 ORTHO05D007388 1.5e-72 277.3 279 51.6
Eucgr.F03233 Eucalyptus grandis HOM05D006003 ORTHO05D007388 2.0e-72 276.9 328 47.3
Sabra11G0076500 Salix brachista HOM05D006003 ORTHO05D007388 2.6e-72 276.6 274 51.5
PGSC0003DMG400007060 Solanum tuberosum HOM05D006003 ORTHO05D007388 2.6e-72 276.6 290 49.0
Solyc07g062150.3 Solanum lycopersicum HOM05D006003 ORTHO05D007388 3.4e-72 276.2 328 46.6
DCAR_019616 Daucus carota HOM05D006003 ORTHO05D007388 4.5e-72 275.8 281 50.5
HanXRQChr14g0439341 Helianthus annuus HOM05D006003 ORTHO05D007388 5.9e-72 275.4 274 50.7
Psat5g233200 Pisum sativum HOM05D006003 ORTHO05D007388 5.9e-72 275.4 274 50.7
Actinidia12605 Actinidia chinensis HOM05D006003 ORTHO05D007388 7.7e-72 275.0 279 50.9
Ciclev10021233m.g Citrus clementina HOM05D006003 ORTHO05D007388 7.7e-72 275.0 279 49.8
Migut.M00692 Erythranthe guttata HOM05D006003 ORTHO05D007388 7.7e-72 275.0 328 46.0
Nitab4.5_0003230g0040 Nicotiana tabacum HOM05D006003 ORTHO05D007388 1.7e-71 273.9 301 46.5
PGR031G3165 Punica granatum HOM05D006003 ORTHO05D007388 1.7e-71 273.9 278 48.9
Prupe.4G156300 Prunus persica HOM05D006003 ORTHO05D007388 2.2e-71 273.5 284 48.2
Prupe.4G156400 Prunus persica HOM05D006003 ORTHO05D007388 3.8e-71 272.7 328 45.7
Eucgr.F01368 Eucalyptus grandis HOM05D006003 ORTHO05D007388 6.5e-71 271.9 280 48.6
FvH4_3g17730 Fragaria vesca HOM05D006003 ORTHO05D007388 6.5e-71 271.9 291 48.8
Os09g0345700 Oryza sativa ssp. japonica HOM05D006003 ORTHO05D007388 1.1e-70 271.2 278 50.7
MD11G1270100 Malus domestica HOM05D006003 ORTHO05D007388 1.4e-70 270.8 279 48.4
Sopen07g030420 Solanum pennellii HOM05D006003 ORTHO05D007388 1.4e-70 270.8 328 46.0
Oeu005377.2 Olea europaea HOM05D006003 ORTHO05D007388 1.9e-70 270.4 280 49.3
EL10Ac4g08418 Beta vulgaris HOM05D006003 ORTHO05D007388 2.5e-70 270.0 328 44.2
Peaxi162Scf00111g01321 Petunia axillaris HOM05D006003 ORTHO05D007388 2.5e-70 270.0 280 48.6
SGA_v2.0_scaffold181G39767 Striga asiatica HOM05D006003 ORTHO05D007388 2.5e-70 270.0 281 49.1
Nitab4.5_0000347g0030 Nicotiana tabacum HOM05D006003 ORTHO05D007388 3.2e-70 269.6 299 46.5
CANSAT56G1876 Cannabis sativa HOM05D006003 ORTHO05D007388 7.2e-70 268.5 280 48.6
FAN16G0946 Fragaria x ananassa HOM05D006003 ORTHO05D007388 7.2e-70 268.5 291 48.1
Thecc.07G133000 Theobroma cacao HOM05D006003 ORTHO05D007388 7.2e-70 268.5 331 43.5
Gorai.002G047000 Gossypium raimondii HOM05D006003 ORTHO05D007388 1.2e-69 267.7 300 46.3
HanXRQChr13g0389731 Helianthus annuus HOM05D006003 ORTHO05D007388 1.2e-69 267.7 274 50.4
Gohir.A01G047600 Gossypium hirsutum HOM05D006003 ORTHO05D007388 1.6e-69 267.3 300 46.3
HPP92_006378 Vanilla planifolia HOM05D006003 ORTHO05D007388 1.6e-69 267.3 330 44.8
TWI39G0770 Tripterygium wilfordii HOM05D006003 ORTHO05D007388 2.1e-69 266.9 301 47.2
FAN25G0059 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.7e-69 266.5 343 43.7
Oeu059254.1 Olea europaea HOM05D006003 ORTHO05D007388 4.7e-69 265.8 280 49.6
Lsat_1_v5_gn_9_100380 Lactuca sativa HOM05D006003 ORTHO05D007388 6.1e-69 265.4 328 43.9
PSO541G5634 Papaver somniferum HOM05D006003 ORTHO05D007388 6.1e-69 265.4 280 48.6
PGR083G1570 Punica granatum HOM05D006003 ORTHO05D007388 1.4e-68 264.2 291 48.5
Gohir.D01G038300 Gossypium hirsutum HOM05D006003 ORTHO05D007388 2.3e-68 263.5 268 49.6
QL08p024148 Quercus lobata HOM05D006003 ORTHO05D007388 3.0e-68 263.1 279 47.7
ECA240G1635 Erigeron canadensis HOM05D006003 ORTHO05D007388 1.5e-67 260.8 277 47.7
PSO675G5422 Papaver somniferum HOM05D006003 ORTHO05D007388 1.5e-67 260.8 280 47.9
FAN21G1616 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.0e-67 260.4 262 50.8
SHI27565 Sapria himalayana HOM05D006003 ORTHO05D007388 7.4e-67 258.5 253 52.2
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.7e-66 257.3 278 47.5
THA.LOC104813991 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 2.2e-66 256.9 279 48.4
Cfa019519 Carpinus fangiana HOM05D006003 ORTHO05D007388 2.8e-66 256.5 279 45.9
Lj1C824T4 Lonicera japonica HOM05D006003 ORTHO05D007388 2.8e-66 256.5 274 48.2
MSTRG.6692 Avicennia marina HOM05D006003 ORTHO05D007388 4.8e-66 255.8 328 42.7
Lj8A146G66 Lonicera japonica HOM05D006003 ORTHO05D007388 1.4e-65 254.2 300 45.3
arahy.Tifrunner.gnm1.ann1.U60PIC Arachis hypogaea HOM05D006003 ORTHO05D007388 3.1e-65 253.1 279 48.7
Haze_09249 Corylus avellana HOM05D006003 ORTHO05D007388 3.5e-64 249.6 279 45.5
MBI06_g08515_MAGBIO Magnolia biondii HOM05D006003 ORTHO05D007388 4.5e-64 249.2 278 46.8
CDE04G1397 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 8.5e-63 245.0 279 50.5
Cpa.g.sc77.63 Carica papaya HOM05D006003 ORTHO05D007388 1.1e-62 244.6 279 45.9
THA.LOC104808088 Tarenaya hassleriana HOM05D006003 ORTHO05D007388 3.0e-60 236.5 279 45.9
Thhalv10018897m.g Eutrema salsugineum HOM05D006003 ORTHO05D007388 5.2e-60 235.7 281 45.6
Carub.0002s2544 Capsella rubella HOM05D006003 ORTHO05D007388 8.8e-60 235.0 282 45.4
Nn6g34421 Nelumbo nucifera HOM05D006003 ORTHO05D007388 1.5e-59 234.2 263 49.8
C02p35670 Brassica napus HOM05D006003 ORTHO05D007388 2.0e-59 233.8 282 45.0
BolC2t09587H Brassica oleracea HOM05D006003 ORTHO05D007388 2.6e-59 233.4 282 45.0
BcaC03g15825 Brassica carinata HOM05D006003 ORTHO05D007388 3.3e-59 233.0 282 45.0
BcaC08g47430 Brassica carinata HOM05D006003 ORTHO05D007388 3.3e-59 233.0 282 45.4
CARHR072080 Cardamine hirsuta HOM05D006003 ORTHO05D007388 3.3e-59 233.0 279 44.8
MD03G1247500 Malus domestica HOM05D006003 ORTHO05D007388 3.3e-59 233.0 250 49.6
SalBow8G3868 Salvia bowleyana HOM05D006003 ORTHO05D007388 3.3e-59 233.0 274 46.7
BcaB05g25146 Brassica carinata HOM05D006003 ORTHO05D007388 4.4e-59 232.6 282 45.4
A07p43860 Brassica napus HOM05D006003 ORTHO05D007388 9.7e-59 231.5 282 45.4
BraA07t31893Z Brassica rapa HOM05D006003 ORTHO05D007388 2.2e-58 230.3 282 45.4
Sp5g33680 Schrenkiella parvula HOM05D006003 ORTHO05D007388 2.2e-58 230.3 282 44.7
AL2G38990 Arabidopsis lyrata HOM05D006003 ORTHO05D007388 2.8e-58 229.9 279 45.2
C06p52490 Brassica napus HOM05D006003 ORTHO05D007388 4.8e-58 229.2 282 45.0
Aa31LG4G2370 Aethionema arabicum HOM05D006003 ORTHO05D007388 6.3e-58 228.8 274 45.6
Sc03g0010720 Simmondsia chinensis HOM05D006003 ORTHO05D007388 6.3e-58 228.8 280 45.4
A02p22240 Brassica napus HOM05D006003 ORTHO05D007388 8.2e-58 228.4 282 44.3
BraA02t07230Z Brassica rapa HOM05D006003 ORTHO05D007388 1.1e-57 228.0 282 44.0
AT1G78590 Arabidopsis thaliana HOM05D006003 ORTHO05D007388 1.4e-57 227.6 279 44.8
BolC6t40268H Brassica oleracea HOM05D006003 ORTHO05D007388 1.4e-57 227.6 282 44.7
Dinv26706 Davidia involucrata HOM05D006003 ORTHO05D007388 2.0e-56 223.8 204 54.4
COL.COLO4_17472 Corchorus olitorius HOM05D006003 ORTHO05D007388 7.7e-56 221.9 217 52.5
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 1.3e-55 221.1 301 42.9
Phvul.005G076600 Phaseolus vulgaris HOM05D006003 ORTHO05D007388 2.2e-55 220.3 217 53.0
Duzib268G1415 Durio zibethinus HOM05D006003 ORTHO05D007388 8.5e-55 218.4 209 52.6
CiPaw.11G156000 Carya illinoinensis HOM05D006003 ORTHO05D007388 8.0e-53 211.8 244 47.1
MCO14G555 Micromonas commoda HOM05D006003 ORTHO05D007388 4.0e-44 183.0 284 39.8
Zm00001eb098430 Zea mays HOM05D006003 ORTHO05D007388 7.5e-43 178.7 194 47.4
MD03G1248900 Malus domestica HOM05D006003 ORTHO05D007388 1.6e-32 144.4 195 45.1
FAN11G1972 Fragaria x ananassa HOM05D006003 ORTHO05D007388 2.7e-32 143.7 191 42.9
SalBow7G3240 Salvia bowleyana HOM05D006003 ORTHO05D007388 4.6e-32 142.9 136 51.5
AUR62039577 Chenopodium quinoa HOM05D006003 ORTHO05D007388 1.5e-27 127.9 108 55.6
RcHm_v2.0_Chr5g0029501 Rosa chinensis HOM05D006003 ORTHO05D007388 5.0e-23 112.8 131 44.3
RcHm_v2.0_Chr5g0029511 Rosa chinensis HOM05D006003 ORTHO05D007388 1.7e-18 97.8 100 49.0
Psat5g275400 Pisum sativum HOM05D006003 ORTHO05D007388 7.3e-14 82.4 99 41.4
PRCOL_00004450 Prasinoderma coloniale HOM05D006003 ORTHO05D007388 8.4e-10 68.9 269 27.9
CDE03G0511 Ceratophyllum demersum HOM05D006003 ORTHO05D007388 6.6e-07 59.3 62 53.2


User provided reference genes

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