Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 2095.1 1088 100.0
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 0.0e+00 1276.5 1095 59.5
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1251.1 1115 58.0
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 0.0e+00 1154.0 1063 55.2
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1142.1 1072 54.4
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1135.9 1073 53.6
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1130.9 1072 53.5
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1130.5 1072 53.6
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1128.6 1072 53.5
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1127.1 1073 53.7
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1126.3 1074 53.6
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1125.9 1071 53.8
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1124.4 1071 53.3
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1124.4 1073 53.8
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1123.6 1072 53.4
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1120.9 1071 52.7
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1116.7 1080 52.7
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1115.5 1071 53.2
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1114.4 1079 52.3
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1113.2 1072 53.2
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1111.3 1073 53.4
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1110.9 1074 52.2
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1110.1 1082 52.3
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1110.1 1105 51.5
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1109.7 1074 52.2
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1108.6 1071 52.8
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1108.6 1104 51.6
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1108.2 1102 51.7
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1107.8 1071 52.4
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1106.3 1095 51.6
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1105.9 1070 52.5
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1104.7 1071 52.5
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1104.0 1070 52.3
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1103.6 1071 52.1
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1102.8 1107 52.3
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1102.8 1071 52.4
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1102.8 1071 52.5
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1102.4 1106 52.4
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1101.7 1072 52.4
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1101.3 1099 52.6
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1100.9 1105 51.6
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1100.5 1101 51.3
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1100.1 1071 52.3
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1099.0 1072 52.1
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1098.6 1071 53.3
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1098.6 1072 52.3
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1097.0 1072 52.1
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1096.3 1074 52.9
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1095.9 1071 52.3
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1095.5 1078 51.9
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1094.3 1077 52.2
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1094.3 1109 51.2
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1094.3 1073 52.0
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1093.6 1072 52.8
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1093.6 1122 50.5
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1093.2 1078 51.8
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1092.4 1075 51.3
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1091.6 1072 52.1
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1091.6 1033 54.9
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1090.1 1040 53.1
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1089.7 1075 51.3
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1089.7 1078 51.3
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1089.7 1073 52.3
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1089.3 1072 52.0
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1088.2 1107 51.7
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1087.0 1107 51.7
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1087.0 1076 51.6
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1086.2 1107 51.7
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1084.7 1077 51.5
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1083.9 1107 51.4
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1083.9 1078 50.9
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1083.9 1103 50.8
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1083.9 1072 51.4
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1083.6 1072 51.8
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1083.6 1073 52.0
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1083.6 1070 51.9
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1083.6 1073 51.1
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1080.1 1076 51.3
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1079.3 1069 51.6
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1078.9 1065 51.7
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1075.1 1077 51.3
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 7.4e-312 1074.7 1071 51.3
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 7.4e-312 1073.5 1078 50.7
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 7.4e-312 1073.5 1072 51.6
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 1.5e-311 1073.2 1074 51.0
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 2.2e-311 1072.4 1064 52.3
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 8.9e-311 1070.5 1077 52.4
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 8.9e-311 1070.5 1077 52.4
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 1.5e-310 1069.7 1052 53.7
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 4.3e-310 1068.1 1069 51.9
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 4.0e-308 1061.6 1064 51.1
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 4.0e-308 1061.6 1072 51.6
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 6.9e-308 1060.8 1061 51.0
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 3.4e-307 1058.5 1070 50.7
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 3.9e-303 1045.0 1070 49.9
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 2.5e-302 1042.3 1039 51.2
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 1.6e-301 1039.6 1105 49.3
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 1.4e-300 1036.6 1031 52.9
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 1.8e-300 1036.2 1010 52.3
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 5.5e-297 1024.6 1070 49.3
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 2.6e-291 1005.7 1034 50.0
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 9.3e-289 997.3 1083 48.7
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 1.5e-286 989.9 946 53.8
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 7.9e-280 967.6 1070 47.5
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 3.0e-279 965.7 1073 47.3
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 3.4e-275 952.2 925 53.0
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 1.9e-273 946.4 924 52.5
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 3.3e-262 909.1 909 51.3
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 2.5e-257 892.9 890 51.0
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.6e-251 873.6 874 51.3
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 3.8e-242 842.4 1109 44.2
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 3.6e-232 809.3 779 53.0
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 4.6e-211 739.2 770 50.1
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 1.3e-202 711.1 766 48.7
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 1.7e-197 694.1 669 52.2
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 4.0e-191 672.9 872 44.0
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.8e-167 594.3 613 48.9
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 1.0e-157 562.0 579 50.4
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 7.0e-119 433.0 1134 29.7
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 7.5e-113 412.9 1187 29.7
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 3.5e-102 377.5 364 51.1
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 5.1e-101 373.6 346 56.6
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 5.4e-95 353.6 352 52.6
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 2.1e-91 341.7 357 51.3
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 9.0e-82 309.7 626 36.9
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.2e-81 309.3 353 49.0
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 8.2e-59 233.4 289 44.3
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 4.5e-57 227.6 295 43.7
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 1.3e-48 199.5 321 40.5
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 2.2e-40 172.2 319 33.5
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 4.5e-33 147.9 321 35.5
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 5.4e-18 97.8 99 49.5
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 1.1e-15 90.1 69 55.1
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 1.9e-15 89.4 84 53.6
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 3.3e-15 88.6 64 57.8
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 1.2e-14 86.7 153 40.5
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 1.0e-13 83.6 84 50.0
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 3.4e-12 78.6 76 50.0


User provided reference genes

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