Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_22450 Physcomitrium patens HOM05D005613 ORTHO05D006903 2.3e-187 658.7 323 100.0
Mapoly0019s0004 Marchantia polymorpha HOM05D005613 ORTHO05D006903 3.3e-109 399.1 275 65.8
SMO180G0005 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 3.3e-101 372.5 273 63.4
Eucgr.K02737 Eucalyptus grandis HOM05D005613 ORTHO05D006903 4.7e-95 352.1 272 62.1
QL10p004191 Quercus lobata HOM05D005613 ORTHO05D006903 2.6e-93 346.3 279 59.9
MSTRG.17588 Avicennia marina HOM05D005613 ORTHO05D006903 7.5e-93 344.7 275 60.0
EL10Ac5g11023 Beta vulgaris HOM05D005613 ORTHO05D006903 7.5e-93 344.7 276 58.7
Glyma.06G171500 Glycine max HOM05D005613 ORTHO05D006903 7.5e-93 344.7 283 59.0
Prupe.5G152900 Prunus persica HOM05D005613 ORTHO05D006903 7.5e-93 344.7 272 61.4
Migut.N02308 Erythranthe guttata HOM05D005613 ORTHO05D006903 1.3e-92 344.0 280 58.2
Aqoxy5G04126 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.7e-92 343.6 275 60.0
Actinidia15836 Actinidia chinensis HOM05D005613 ORTHO05D006903 2.2e-92 343.2 272 61.0
QL10p004130 Quercus lobata HOM05D005613 ORTHO05D006903 2.2e-92 343.2 279 59.5
CSS0000406 Camellia sinensis var. sinensis HOM05D005613 ORTHO05D006903 2.8e-92 342.8 272 61.0
PGR044G0561 Punica granatum HOM05D005613 ORTHO05D006903 2.8e-92 342.8 272 60.7
Lj1g0013310 Lotus japonicus HOM05D005613 ORTHO05D006903 3.7e-92 342.4 279 59.5
Dinv11157 Davidia involucrata HOM05D005613 ORTHO05D006903 1.1e-91 340.9 272 59.2
Manes.14G052800 Manihot esculenta HOM05D005613 ORTHO05D006903 1.4e-91 340.5 285 58.9
Phvul.009G167500 Phaseolus vulgaris HOM05D005613 ORTHO05D006903 1.4e-91 340.5 279 59.1
CANSAT80G2472 Cannabis sativa HOM05D005613 ORTHO05D006903 1.8e-91 340.1 277 60.3
CiPaw.11G009100 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.8e-91 340.1 278 59.0
MD06G1143700 Malus domestica HOM05D005613 ORTHO05D006903 2.4e-91 339.7 276 59.4
MD14G1159000 Malus domestica HOM05D005613 ORTHO05D006903 2.4e-91 339.7 276 59.4
Zm00001eb265520 Zea mays HOM05D005613 ORTHO05D006903 3.1e-91 339.3 274 61.3
BcaB01g02892 Brassica carinata HOM05D005613 ORTHO05D006903 4.1e-91 339.0 281 59.1
Glyma.04G194500 Glycine max HOM05D005613 ORTHO05D006903 4.1e-91 339.0 279 59.1
CAN.G767.35 Capsicum annuum HOM05D005613 ORTHO05D006903 5.4e-91 338.6 277 59.2
AagrBONN_evm.TU.Sc2ySwM_362.2466 Anthoceros agrestis HOM05D005613 ORTHO05D006903 7.0e-91 338.2 228 67.5
Duzib205G1234 Durio zibethinus HOM05D005613 ORTHO05D006903 7.0e-91 338.2 279 59.1
HanXRQChr09g0273061 Helianthus annuus HOM05D005613 ORTHO05D006903 7.0e-91 338.2 272 60.3
ECA232G4063 Erigeron canadensis HOM05D005613 ORTHO05D006903 9.1e-91 337.8 272 59.6
Psat5g169720 Pisum sativum HOM05D005613 ORTHO05D006903 9.1e-91 337.8 279 59.5
TWI23G0755 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 9.1e-91 337.8 291 58.1
Cc07_g17610 Coffea canephora HOM05D005613 ORTHO05D006903 1.2e-90 337.4 272 59.6
Hund02427 Selenicereus undatus HOM05D005613 ORTHO05D006903 1.2e-90 337.4 280 57.5
AUR62032039 Chenopodium quinoa HOM05D005613 ORTHO05D006903 1.6e-90 337.0 272 59.2
Gohir.D07G056300 Gossypium hirsutum HOM05D005613 ORTHO05D006903 1.6e-90 337.0 279 58.8
Gorai.001G059700 Gossypium raimondii HOM05D005613 ORTHO05D006903 1.6e-90 337.0 279 58.8
Medtr3g089010 Medicago truncatula HOM05D005613 ORTHO05D006903 1.6e-90 337.0 279 58.8
Gohir.A07G051800 Gossypium hirsutum HOM05D005613 ORTHO05D006903 2.0e-90 336.7 279 59.1
unitig_27.g24986 Utricularia gibba HOM05D005613 ORTHO05D006903 2.0e-90 336.7 264 62.1
BcaC01g04807 Brassica carinata HOM05D005613 ORTHO05D006903 3.5e-90 335.9 272 59.9
SEGI_09495 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 4.5e-90 335.5 275 58.2
Manes.06G118100 Manihot esculenta HOM05D005613 ORTHO05D006903 5.9e-90 335.1 278 58.6
PSO017G2706 Papaver somniferum HOM05D005613 ORTHO05D006903 5.9e-90 335.1 272 60.7
Potri.015G093500 Populus trichocarpa HOM05D005613 ORTHO05D006903 5.9e-90 335.1 272 59.2
Sopen12g033400 Solanum pennellii HOM05D005613 ORTHO05D006903 5.9e-90 335.1 277 58.8
PGSC0003DMG400004674 Solanum tuberosum HOM05D005613 ORTHO05D006903 7.7e-90 334.7 277 58.8
Thecc.03G126700 Theobroma cacao HOM05D005613 ORTHO05D006903 1.3e-89 334.0 279 58.4
Carub.0008s1047 Capsella rubella HOM05D005613 ORTHO05D006903 1.7e-89 333.6 272 58.5
Nitab4.5_0007541g0020 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.7e-89 333.6 277 59.6
Nitab4.5_0011040g0030 Nicotiana tabacum HOM05D005613 ORTHO05D006903 1.7e-89 333.6 277 59.6
GSVIVG01008514001 Vitis vinifera HOM05D005613 ORTHO05D006903 1.7e-89 333.6 272 59.9
PSO017G3077 Papaver somniferum HOM05D005613 ORTHO05D006903 2.3e-89 333.2 272 60.7
PSO478G0845 Papaver somniferum HOM05D005613 ORTHO05D006903 2.3e-89 333.2 272 60.3
Solyc12g098640.3 Solanum lycopersicum HOM05D005613 ORTHO05D006903 2.3e-89 333.2 277 58.5
Lsat_1_v5_gn_4_76740 Lactuca sativa HOM05D005613 ORTHO05D006903 2.9e-89 332.8 272 60.3
Lalb_Chr11g0069651 Lupinus albus HOM05D005613 ORTHO05D006903 2.9e-89 332.8 280 57.5
THA.LOC104803145 Tarenaya hassleriana HOM05D005613 ORTHO05D006903 6.5e-89 331.6 277 57.0
TPR.G26132 Trifolium pratense HOM05D005613 ORTHO05D006903 6.5e-89 331.6 305 55.1
TAR371G0420 Trochodendron aralioides HOM05D005613 ORTHO05D006903 6.5e-89 331.6 272 58.5
RcHm_v2.0_Chr7g0190451 Rosa chinensis HOM05D005613 ORTHO05D006903 8.6e-89 331.3 279 58.1
C03p33570 Brassica napus HOM05D005613 ORTHO05D006903 1.1e-88 330.9 274 59.5
CARHR258110 Cardamine hirsuta HOM05D005613 ORTHO05D006903 1.1e-88 330.9 272 58.8
TWI39G1237 Tripterygium wilfordii HOM05D005613 ORTHO05D006903 1.1e-88 330.9 291 55.7
PSO675G0985 Papaver somniferum HOM05D005613 ORTHO05D006903 1.5e-88 330.5 272 59.6
Cc00_g03610 Coffea canephora HOM05D005613 ORTHO05D006903 1.9e-88 330.1 274 58.4
FvH4_5g07950 Fragaria vesca HOM05D005613 ORTHO05D006903 1.9e-88 330.1 272 59.2
ATR0680G053 Amborella trichopoda HOM05D005613 ORTHO05D006903 2.5e-88 329.7 274 57.7
A03p27830 Brassica napus HOM05D005613 ORTHO05D006903 2.5e-88 329.7 279 58.4
Peaxi162Scf00378g00519 Petunia axillaris HOM05D005613 ORTHO05D006903 2.5e-88 329.7 280 57.9
Ciclev10021465m.g Citrus clementina HOM05D005613 ORTHO05D006903 3.2e-88 329.3 278 57.9
BolC3t15677H Brassica oleracea HOM05D005613 ORTHO05D006903 5.5e-88 328.6 280 58.2
BraA03t11994Z Brassica rapa HOM05D005613 ORTHO05D006903 7.2e-88 328.2 285 57.2
Aa31LG3G6910 Aethionema arabicum HOM05D005613 ORTHO05D006903 9.5e-88 327.8 272 58.1
arahy.Tifrunner.gnm1.ann1.91S2FI Arachis hypogaea HOM05D005613 ORTHO05D006903 9.5e-88 327.8 300 55.3
MELO3C002354.2 Cucumis melo HOM05D005613 ORTHO05D006903 9.5e-88 327.8 272 58.1
CsaV3_1G009570 Cucumis sativus L. HOM05D005613 ORTHO05D006903 1.2e-87 327.4 272 58.1
SpUn0050_0040 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.6e-87 327.0 272 58.5
AL8G24500 Arabidopsis lyrata HOM05D005613 ORTHO05D006903 2.1e-87 326.6 272 58.1
AT5G50375 Arabidopsis thaliana HOM05D005613 ORTHO05D006903 2.8e-87 326.2 272 57.7
SalBow7G2516 Salvia bowleyana HOM05D005613 ORTHO05D006903 2.8e-87 326.2 281 58.0
Thhalv10014300m.g Eutrema salsugineum HOM05D005613 ORTHO05D006903 3.6e-87 325.9 272 57.4
DCAR_021614 Daucus carota HOM05D005613 ORTHO05D006903 4.7e-87 325.5 272 58.5
Rhsim08G0188600 Rhododendron simsii HOM05D005613 ORTHO05D006903 6.1e-87 325.1 257 61.9
VMungo1309G0937 Vigna mungo HOM05D005613 ORTHO05D006903 1.0e-86 324.3 257 60.7
DCAR_016405 Daucus carota HOM05D005613 ORTHO05D006903 1.4e-86 323.9 275 58.2
Lj9C477T8 Lonicera japonica HOM05D005613 ORTHO05D006903 5.2e-86 322.0 272 58.1
Actinidia25589 Actinidia chinensis HOM05D005613 ORTHO05D006903 6.8e-86 321.6 271 58.3
Haze_07235 Corylus avellana HOM05D005613 ORTHO05D006903 6.8e-86 321.6 320 51.6
Sed0021273 Sechium edule HOM05D005613 ORTHO05D006903 1.2e-85 320.9 272 58.1
Sed0001462 Sechium edule HOM05D005613 ORTHO05D006903 1.5e-85 320.5 273 58.2
arahy.Tifrunner.gnm1.ann1.AY81KB Arachis hypogaea HOM05D005613 ORTHO05D006903 4.4e-85 318.9 279 57.7
FAN13G2894 Fragaria x ananassa HOM05D005613 ORTHO05D006903 7.5e-85 318.2 279 57.0
unitig_699.g19129 Utricularia gibba HOM05D005613 ORTHO05D006903 2.2e-84 316.6 257 59.5
CDE02G3999 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 7.0e-83 311.6 259 58.3
ClCG03G003690 Citrullus lanatus HOM05D005613 ORTHO05D006903 1.6e-82 310.5 320 50.0
A09p55960 Brassica napus HOM05D005613 ORTHO05D006903 2.0e-82 310.1 274 55.5
BraA09t40998Z Brassica rapa HOM05D005613 ORTHO05D006903 2.0e-82 310.1 274 55.5
Sabra15G0115100 Salix brachista HOM05D005613 ORTHO05D006903 2.0e-82 310.1 289 54.0
C08p38940 Brassica napus HOM05D005613 ORTHO05D006903 5.9e-82 308.5 272 55.5
BolC8t51467H Brassica oleracea HOM05D005613 ORTHO05D006903 1.0e-81 307.8 272 55.5
BcaB08g35134 Brassica carinata HOM05D005613 ORTHO05D006903 6.6e-81 305.1 272 54.8
FAN18G4059 Fragaria x ananassa HOM05D005613 ORTHO05D006903 9.5e-80 301.2 312 50.6
Dinv04871 Davidia involucrata HOM05D005613 ORTHO05D006903 1.6e-79 300.4 274 56.2
BcaC07g40897 Brassica carinata HOM05D005613 ORTHO05D006903 2.1e-79 300.1 276 54.3
Nn4g22373 Nelumbo nucifera HOM05D005613 ORTHO05D006903 4.1e-75 285.8 281 53.4
Cre16.g657300 Chlamydomonas reinhardtii HOM05D005613 ORTHO05D006903 2.7e-74 283.1 270 53.7
arahy.Tifrunner.gnm1.ann1.LN4RIT Arachis hypogaea HOM05D005613 ORTHO05D006903 6.0e-74 282.0 244 57.4
Cpa.g.sc13.142 Carica papaya HOM05D005613 ORTHO05D006903 2.5e-72 276.6 212 61.3
vmacro19214 Vaccinium macrocarpon HOM05D005613 ORTHO05D006903 2.5e-72 276.6 355 45.1
AUR62036512 Chenopodium quinoa HOM05D005613 ORTHO05D006903 3.3e-72 276.2 241 55.6
FAN08G1682 Fragaria x ananassa HOM05D005613 ORTHO05D006903 1.1e-70 271.2 290 50.3
CBR_g48821 Chara braunii HOM05D005613 ORTHO05D006903 5.8e-69 265.4 208 59.6
AagrBONN_evm.TU.Sc2ySwM_117.1130 Anthoceros agrestis HOM05D005613 ORTHO05D006903 3.7e-68 262.7 181 66.3
CDE09G1331 Ceratophyllum demersum HOM05D005613 ORTHO05D006903 3.7e-68 262.7 256 52.3
BcaB05g24059 Brassica carinata HOM05D005613 ORTHO05D006903 1.2e-66 257.7 290 49.7
COL.COLO4_28085 Corchorus olitorius HOM05D005613 ORTHO05D006903 1.2e-66 257.7 230 55.2
Aqoxy22s001 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 1.9e-64 250.4 198 61.6
SMO353G0009 Selaginella moellendorffii HOM05D005613 ORTHO05D006903 5.6e-64 248.8 261 52.1
SpUn0508_0010 Schrenkiella parvula HOM05D005613 ORTHO05D006903 1.2e-63 247.7 213 58.7
CiPaw.12G041000 Carya illinoinensis HOM05D005613 ORTHO05D006903 1.1e-62 244.6 200 61.0
SHI39270 Sapria himalayana HOM05D005613 ORTHO05D006903 2.6e-61 240.0 194 61.9
SHI42710 Sapria himalayana HOM05D005613 ORTHO05D006903 2.6e-61 240.0 194 61.9
Aqoxy1G01617 Aquilegia oxysepala HOM05D005613 ORTHO05D006903 8.3e-60 235.0 217 53.9
AUR62032713 Chenopodium quinoa HOM05D005613 ORTHO05D006903 2.8e-47 193.4 229 46.7
SGA_v2.0_scaffold42G16110 Striga asiatica HOM05D005613 ORTHO05D006903 2.1e-42 177.2 297 38.4
PRCOL_00007276 Prasinoderma coloniale HOM05D005613 ORTHO05D006903 2.7e-42 176.8 275 40.7
HPP92_006202 Vanilla planifolia HOM05D005613 ORTHO05D006903 8.1e-39 165.2 159 56.6
SGA_v2.0_scaffold115G32075 Striga asiatica HOM05D005613 ORTHO05D006903 1.1e-38 164.9 157 54.8
MCO03G530 Micromonas commoda HOM05D005613 ORTHO05D006903 1.5e-37 161.0 211 42.7
Ah.11g044830 Amaranthus hybridus HOM05D006563 ORTHO05D008154 2.0e-37 160.6 136 56.6
HPP92_006201 Vanilla planifolia HOM05D005613 ORTHO05D006903 5.3e-30 136.0 94 63.8
SGA_v2.0_scaffold115G32072 Striga asiatica HOM05D000001 ORTHO05D000003 9.0e-30 135.2 230 36.1
Os11g0302500 Oryza sativa ssp. japonica HOM05D005613 ORTHO05D006903 5.3e-22 109.4 85 55.3
SGA_v2.0_scaffold3G01513 Striga asiatica HOM05D005613 ORTHO05D006903 1.3e-17 94.7 68 58.8
CBR_g48823 Chara braunii HOM05D005613 ORTHO05D006903 6.5e-12 75.9 61 52.5
SEGI_05867 Sequoiadendron giganteum HOM05D005613 ORTHO05D006903 3.3e-08 63.5 39 66.7


User provided reference genes

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