Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_22380 Physcomitrium patens HOM05D026472 ORTHO05D315766 5.0e-229 797.3 381 100.0
Pp3c1_42650 Physcomitrium patens HOM05D026472 ORTHO05D318069 7.7e-97 358.2 377 49.9
Pp3c10_25590 Physcomitrium patens HOM05D026472 ORTHO05D317653 1.4e-53 214.5 371 33.4
Pp3c21_19440 Physcomitrium patens HOM05D026472 ORTHO05D317691 2.6e-52 210.3 381 35.7
Hund25470 Selenicereus undatus HOM05D002809 ORTHO05D004563 6.5e-19 99.4 370 25.7
PGR119G2572 Punica granatum HOM05D002809 ORTHO05D004563 2.7e-17 94.0 345 24.6
SMO116G0409 Selaginella moellendorffii HOM05D002809 ORTHO05D004563 3.5e-17 93.6 380 26.6
CiPaw.05G108500 Carya illinoinensis HOM05D002809 ORTHO05D004563 6.0e-17 92.8 251 27.5
MD13G1120600 Malus domestica HOM05D002809 ORTHO05D004563 1.0e-16 92.0 253 27.3
Lj4g0005095 Lotus japonicus HOM05D002809 ORTHO05D004563 1.3e-16 91.7 339 24.5
RcHm_v2.0_Chr4g0430081 Rosa chinensis HOM05D002809 ORTHO05D004563 3.0e-16 90.5 251 26.3
HanXRQChr08g0207911 Helianthus annuus HOM05D002809 ORTHO05D004563 3.9e-16 90.1 349 23.8
Manes.12G010000 Manihot esculenta HOM05D002809 ORTHO05D004563 8.7e-16 89.0 258 26.0
Nn3g16449 Nelumbo nucifera HOM05D002809 ORTHO05D004563 8.7e-16 89.0 351 23.9
Prupe.1G224600 Prunus persica HOM05D002809 ORTHO05D004563 1.1e-15 88.6 251 26.7
Haze_12431 Corylus avellana HOM05D002809 ORTHO05D004563 1.5e-15 88.2 251 25.5
Lsat_1_v5_gn_3_30801 Lactuca sativa HOM05D002809 ORTHO05D004563 2.5e-15 87.4 337 24.9
MSTRG.8011 Avicennia marina HOM05D002809 ORTHO05D004563 3.3e-15 87.0 355 23.4
Gohir.D01G146700 Gossypium hirsutum HOM05D002809 ORTHO05D004563 3.3e-15 87.0 351 23.6
Gorai.002G182600 Gossypium raimondii HOM05D002809 ORTHO05D004563 3.3e-15 87.0 351 23.6
Lj3P1070T8 Lonicera japonica HOM05D002809 ORTHO05D004563 7.4e-15 85.9 286 26.2
VMungo1383G2061 Vigna mungo HOM05D002809 ORTHO05D004563 7.4e-15 85.9 251 26.3
EL10Ac6g13516 Beta vulgaris HOM05D002809 ORTHO05D004563 9.6e-15 85.5 251 26.3
AUR62005631 Chenopodium quinoa HOM05D002809 ORTHO05D004563 9.6e-15 85.5 342 24.6
PSO478G1885 Papaver somniferum HOM05D002809 ORTHO05D004563 1.3e-14 85.1 361 23.5
Psat5g096960 Pisum sativum HOM05D002809 ORTHO05D004563 1.3e-14 85.1 239 25.5
QL03p052448 Quercus lobata HOM05D002809 ORTHO05D004563 1.3e-14 85.1 251 25.9
Hund06095 Selenicereus undatus HOM05D002809 ORTHO05D004563 1.3e-14 85.1 291 25.4
MSTRG.498 Avicennia marina HOM05D002809 ORTHO05D004563 2.1e-14 84.3 347 23.3
Gohir.A01G154500 Gossypium hirsutum HOM05D002809 ORTHO05D004563 2.1e-14 84.3 351 23.4
COL.COLO4_20416 Corchorus olitorius HOM05D002809 ORTHO05D004563 2.8e-14 84.0 246 26.0
PSO017G6955 Papaver somniferum HOM05D002809 ORTHO05D004563 4.8e-14 83.2 361 23.3
Nn4g22302 Nelumbo nucifera HOM05D002809 ORTHO05D004563 6.2e-14 82.8 352 23.3
Manes.13G010700 Manihot esculenta HOM05D002809 ORTHO05D004563 1.1e-13 82.0 247 25.9
Mapoly0014s0188 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.1e-13 82.0 367 24.0
CSS0014036 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 1.4e-13 81.6 348 23.3
CSS0036768 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 1.4e-13 81.6 348 23.3
Nitab4.5_0004914g0010 Nicotiana tabacum HOM05D002809 ORTHO05D004563 1.4e-13 81.6 243 25.9
CSS0001428 Camellia sinensis var. sinensis HOM05D002809 ORTHO05D004563 1.8e-13 81.3 348 23.0
Potri.001G057100 Populus trichocarpa HOM05D002809 ORTHO05D004563 2.4e-13 80.9 353 22.7
AUR62028917 Chenopodium quinoa HOM05D002809 ORTHO05D004563 3.1e-13 80.5 354 22.6
Duzib251G0128 Durio zibethinus HOM05D002809 ORTHO05D004563 3.1e-13 80.5 347 21.9
Eucgr.H04635 Eucalyptus grandis HOM05D002809 ORTHO05D004563 3.1e-13 80.5 339 26.0
Glyma.05G147900 Glycine max HOM05D002809 ORTHO05D004563 3.1e-13 80.5 251 25.5
ATR0561G142 Amborella trichopoda HOM05D002809 ORTHO05D004563 5.3e-13 79.7 371 23.7
SalBow2G0967 Salvia bowleyana HOM05D002809 ORTHO05D004563 5.3e-13 79.7 358 21.8
TAR629G1933 Trochodendron aralioides HOM05D002809 ORTHO05D004563 6.9e-13 79.3 351 22.5
Pp3c10_20160 Physcomitrium patens HOM05D003005 ORTHO05D004563 9.0e-13 79.0 348 25.6
GSVIVG01010498001 Vitis vinifera HOM05D002809 ORTHO05D004563 9.0e-13 79.0 248 27.0
Medtr1g033310 Medicago truncatula HOM05D002809 ORTHO05D004563 1.5e-12 78.2 270 22.6
Peaxi162Scf00128g00136 Petunia axillaris HOM05D002809 ORTHO05D004563 2.0e-12 77.8 357 23.0
Solyc05g015520.3 Solanum lycopersicum HOM05D002809 ORTHO05D004563 2.0e-12 77.8 353 22.1
Sopen12g034970 Solanum pennellii HOM05D002809 ORTHO05D004563 2.0e-12 77.8 353 22.4
PGSC0003DMG400034305 Solanum tuberosum HOM05D002809 ORTHO05D004563 2.0e-12 77.8 351 22.8
DCAR_026456 Daucus carota HOM05D002809 ORTHO05D004563 2.6e-12 77.4 253 26.5
Thecc.02G206300 Theobroma cacao HOM05D002809 ORTHO05D004563 2.6e-12 77.4 246 24.8
Sc14g0009090 Simmondsia chinensis HOM05D002809 ORTHO05D004563 3.4e-12 77.0 254 26.4
Atru.chr11.2338 Acer truncatum HOM05D002809 ORTHO05D004563 5.8e-12 76.3 246 24.8
SMO239G0172 Selaginella moellendorffii HOM05D003005 ORTHO05D004563 7.6e-12 75.9 307 27.0
Pp3c11_18710 Physcomitrium patens HOM05D004302 ORTHO05D004939 1.3e-11 75.1 375 24.0
GSVIVG01035605001 Vitis vinifera HOM05D006415 ORTHO05D008549 3.8e-11 73.6 364 23.6
MBI07_g18750_MAGBIO Magnolia biondii HOM05D002809 ORTHO05D004563 5.0e-11 73.2 250 26.4
Rhsim02G0109800 Rhododendron simsii HOM05D002809 ORTHO05D004563 1.4e-10 71.6 357 23.5
Zm00001eb143020 Zea mays HOM05D002809 ORTHO05D004563 2.5e-10 70.9 349 20.9
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 3.2e-10 70.5 359 22.0
Mapoly0168s0028 Marchantia polymorpha HOM05D003005 ORTHO05D007546 3.2e-10 70.5 359 25.1
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 5.5e-10 69.7 290 23.8
Lalb_Chr04g0261791 Lupinus albus HOM05D003005 ORTHO05D004170 5.5e-10 69.7 321 25.2
Gorai.005G165900 Gossypium raimondii HOM05D002809 ORTHO05D004563 7.2e-10 69.3 369 22.8
SGA_v2.0_scaffold22G09921 Striga asiatica HOM05D006415 ORTHO05D008549 7.2e-10 69.3 319 24.1
Glyma.08G104800 Glycine max HOM05D002809 ORTHO05D004563 9.3e-10 68.9 249 24.9
VMungo0251G0428 Vigna mungo HOM05D002809 ORTHO05D004563 1.6e-09 68.2 253 23.7
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 2.1e-09 67.8 334 21.6
Oeu004454.1 Olea europaea HOM05D002809 ORTHO05D004563 3.5e-09 67.0 343 24.2
Phvul.L002546 Phaseolus vulgaris HOM05D002809 ORTHO05D004563 6.1e-09 66.2 251 24.7
Pp3c4_21230 Physcomitrium patens HOM05D002809 ORTHO05D050338 1.0e-08 65.5 277 24.5
Sc11g0000420 Simmondsia chinensis HOM05D002809 ORTHO05D004563 1.3e-08 65.1 276 20.7
Eucgr.C00751 Eucalyptus grandis HOM05D006415 ORTHO05D008549 2.3e-08 64.3 173 29.5
Gohir.A03G125400 Gossypium hirsutum HOM05D002809 ORTHO05D004563 2.3e-08 64.3 346 23.4
SalBow4G3237 Salvia bowleyana HOM05D006415 ORTHO05D008549 8.7e-08 62.4 405 23.2
Gorai.013G221600 Gossypium raimondii HOM05D006415 ORTHO05D008549 1.5e-07 61.6 183 29.5
MD08G1084200 Malus domestica HOM05D007423 ORTHO05D009091 1.5e-07 61.6 243 25.1
Gohir.D13G195500 Gossypium hirsutum HOM05D006415 ORTHO05D008549 1.9e-07 61.2 183 29.5
Oeu035470.1 Olea europaea HOM05D002809 ORTHO05D004563 1.9e-07 61.2 246 24.4
TAR629G3351 Trochodendron aralioides HOM05D003005 ORTHO05D004170 2.5e-07 60.8 248 25.8
Aqoxy7G00937 Aquilegia oxysepala HOM05D006415 ORTHO05D008549 3.3e-07 60.5 406 22.7
Lalb_Chr18g0044251 Lupinus albus HOM05D003005 ORTHO05D004170 3.3e-07 60.5 320 21.9
AagrBONN_evm.TU.Sc2ySwM_362.1789 Anthoceros agrestis HOM05D002809 ORTHO05D009361 4.3e-07 60.1 237 26.2
CARHR241190 Cardamine hirsuta HOM05D006415 ORTHO05D008549 4.3e-07 60.1 409 21.8
Migut.A00333 Erythranthe guttata HOM05D006415 ORTHO05D008549 4.3e-07 60.1 178 28.1
Mapoly0190s0005 Marchantia polymorpha HOM05D004302 ORTHO05D004939 4.3e-07 60.1 271 25.5
unitig_699.g19960 Utricularia gibba HOM05D002809 ORTHO05D004563 4.3e-07 60.1 230 25.2
Gohir.A13G188500 Gossypium hirsutum HOM05D006415 ORTHO05D008549 5.7e-07 59.7 183 29.0
BcaC09g52125 Brassica carinata HOM05D006415 ORTHO05D008549 7.4e-07 59.3 176 26.1
C01p05460 Brassica napus HOM05D006415 ORTHO05D008549 7.4e-07 59.3 176 26.1
A01p05010 Brassica napus HOM05D006415 ORTHO05D008549 9.7e-07 58.9 119 30.3
Psat4g213360 Pisum sativum HOM05D003005 ORTHO05D004170 9.7e-07 58.9 307 22.1
PGR042G0461 Punica granatum HOM05D003005 ORTHO05D004170 9.7e-07 58.9 311 21.9
AT4G33160 Arabidopsis thaliana HOM05D006415 ORTHO05D008549 1.3e-06 58.5 408 23.0
Prupe.1G423100 Prunus persica HOM05D007423 ORTHO05D009091 1.3e-06 58.5 239 21.8
Mapoly0021s0113 Marchantia polymorpha HOM05D015438 ORTHO05D018027 2.2e-06 57.8 194 27.8
Pp3c22_14550 Physcomitrium patens HOM05D002809 ORTHO05D009385 2.2e-06 57.8 272 24.3
Pp3c24_18510 Physcomitrium patens HOM05D002809 ORTHO05D004939 2.2e-06 57.8 325 20.6
THA.LOC104803713 Tarenaya hassleriana HOM05D006415 ORTHO05D008549 2.2e-06 57.8 422 22.3
TWI14G0325 Tripterygium wilfordii HOM05D003005 ORTHO05D004170 2.2e-06 57.8 118 29.7
Mapoly0114s0043 Marchantia polymorpha HOM05D002809 ORTHO05D030094 2.8e-06 57.4 266 23.7
Mapoly0170s0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.8e-06 57.4 367 22.9
BolC1t00526H Brassica oleracea HOM05D006415 ORTHO05D008549 3.7e-06 57.0 119 30.3
MD15G1070300 Malus domestica HOM05D007423 ORTHO05D009091 3.7e-06 57.0 337 23.1
Manes.03G055400 Manihot esculenta HOM05D006415 ORTHO05D008549 3.7e-06 57.0 125 33.6
SEGI_05332 Sequoiadendron giganteum HOM05D002809 ORTHO05D012113 3.7e-06 57.0 354 23.4
Mapoly0077s0018 Marchantia polymorpha HOM05D063673 ORTHO05D036651 6.3e-06 56.2 181 26.0
MD07G1142500 Malus domestica HOM05D003005 ORTHO05D004170 8.2e-06 55.8 213 24.9
Manes.16G088100 Manihot esculenta HOM05D006415 ORTHO05D008549 8.2e-06 55.8 126 32.5


User provided reference genes

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