Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 0.0e+00 2272.3 1139 100.0
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 0.0e+00 1754.6 1139 77.0
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1202.2 1148 56.5
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 2.6e-289 999.2 1149 47.2
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 4.9e-288 995.0 1148 46.6
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 6.3e-288 994.6 1150 47.1
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 1.4e-287 993.4 1147 46.1
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 5.4e-287 991.5 1147 46.4
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 9.2e-287 990.7 1155 46.4
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 9.2e-287 990.7 1146 46.7
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 3.5e-286 988.8 1148 46.7
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 2.3e-285 986.1 1148 47.0
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 2.9e-285 985.7 1148 46.3
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 2.9e-285 985.7 1148 46.5
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 4.3e-284 981.9 1154 46.2
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 4.3e-284 981.9 1148 46.1
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 1.6e-283 979.9 1150 46.4
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 2.1e-283 979.5 1150 46.1
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 2.8e-283 979.2 1149 46.1
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 4.7e-283 978.4 1146 46.1
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 6.1e-283 978.0 1152 45.7
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 6.1e-283 978.0 1159 45.6
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 1.0e-282 977.2 1151 46.6
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 4.0e-282 975.3 1151 45.8
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 5.2e-282 974.9 1154 46.7
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 1.5e-281 973.4 1153 45.9
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 2.6e-281 972.6 1149 45.7
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 2.9e-280 969.1 1148 46.6
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 2.9e-280 969.1 1151 45.4
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 3.7e-280 968.8 1148 45.4
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 3.7e-280 968.8 1148 46.3
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 1.1e-279 967.2 1147 46.3
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 1.1e-279 967.2 1147 46.3
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 1.4e-279 966.8 1155 45.7
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 2.4e-279 966.1 1146 45.0
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 3.2e-279 965.7 1149 45.5
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 4.1e-279 965.3 1147 45.7
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 4.1e-279 965.3 1149 46.1
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 5.4e-279 964.9 1105 47.1
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 9.2e-279 964.1 1151 45.1
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 1.2e-278 963.8 1148 46.1
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 4.6e-278 961.8 1155 46.1
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 7.8e-278 961.1 1146 45.4
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.0e-277 960.7 1143 46.6
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 1.3e-277 960.3 1146 45.6
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 1.7e-277 959.9 1147 45.4
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 1.7e-277 959.9 1150 45.2
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 2.3e-277 959.5 1146 44.4
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 3.0e-277 959.1 1150 45.7
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 3.9e-277 958.7 1150 45.4
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 6.6e-277 958.0 1125 45.6
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 8.6e-277 957.6 1156 45.6
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 3.3e-276 955.7 1151 46.1
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 5.6e-276 954.9 1145 45.0
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 1.2e-275 953.7 1148 46.7
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 3.6e-275 952.2 1148 45.1
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 4.7e-275 951.8 1151 44.2
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 3.1e-274 949.1 1167 45.2
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 1.5e-273 946.8 1151 44.0
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 4.4e-273 945.3 1148 44.7
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 9.8e-273 944.1 1188 43.6
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.7e-272 943.3 1165 44.9
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 2.2e-272 943.0 1150 45.7
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 4.9e-272 941.8 1149 45.3
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 6.4e-272 941.4 1174 44.4
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 8.3e-272 941.0 1146 46.1
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 1.1e-271 940.6 1146 46.2
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 7.0e-271 937.9 1150 45.1
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 4.6e-270 935.3 1213 43.7
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 1.7e-269 933.3 1153 44.5
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 3.0e-269 932.6 1152 44.8
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 3.0e-269 932.6 1149 45.0
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.6e-269 931.4 1148 44.9
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 8.6e-269 931.0 1145 44.8
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 1.1e-268 930.6 1389 40.9
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 3.3e-268 929.1 1115 46.0
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 2.1e-267 926.4 1184 43.9
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 2.8e-267 926.0 1152 45.0
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 6.2e-267 924.9 1152 44.9
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 1.1e-266 924.1 1094 45.8
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 5.2e-266 921.8 1150 44.8
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 2.0e-265 919.8 1145 44.5
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 2.6e-265 919.5 1148 44.5
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 7.5e-265 917.9 1150 44.7
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 2.9e-264 916.0 1220 42.5
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 2.1e-262 909.8 1147 44.8
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 2.1e-262 909.8 1152 44.2
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 1.0e-261 907.5 1081 46.0
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 1.2e-259 900.6 1170 43.8
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 5.4e-255 885.2 1332 40.8
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 2.3e-253 879.8 1181 43.1
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 9.6e-252 874.4 1278 40.3
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 1.2e-251 874.0 982 47.3
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 2.2e-248 863.2 1138 42.5
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 7.8e-246 854.7 1148 42.2
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 2.8e-243 846.3 881 50.9
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 2.6e-241 839.7 1177 41.6
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 7.1e-239 831.6 873 50.7
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 8.7e-237 824.7 847 50.3
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 9.6e-236 821.2 844 50.2
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.1e-235 820.1 1182 41.9
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 5.3e-234 815.5 1170 41.5
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 2.6e-225 786.6 1132 41.3
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 6.0e-222 775.4 838 49.0
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 4.1e-194 682.9 1138 36.5
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 9.1e-194 681.8 840 42.7
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 2.2e-187 660.6 692 50.3
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 4.5e-177 626.3 811 41.6
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.0e-160 570.5 697 44.3
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.4e-138 498.4 1549 27.3
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 6.9e-133 479.6 539 50.5
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 9.9e-132 475.7 534 49.4
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.1e-125 455.7 702 38.9
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 9.0e-117 426.0 749 34.3
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 2.2e-115 421.4 413 49.9
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 4.9e-115 420.2 470 46.0
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 4.8e-110 403.7 432 52.1
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 8.4e-107 392.9 604 37.4
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 7.9e-105 386.3 568 38.6
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 3.7e-102 377.5 1128 28.0
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 8.8e-96 356.3 783 32.3
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.3e-78 299.3 304 53.9
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 1.8e-77 295.4 1451 22.6
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 5.3e-77 293.9 318 46.2
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.3e-67 262.7 323 48.3
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.2e-65 256.1 371 45.3
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 4.0e-64 251.1 321 48.0
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 1.6e-49 202.6 475 28.0
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 7.5e-39 167.2 239 44.4
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 1.7e-35 156.0 197 43.1
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 6.6e-35 154.1 702 24.2
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.4e-32 146.4 234 39.7
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 3.1e-32 145.2 213 38.5
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 8.9e-24 117.1 199 42.7
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 1.3e-22 113.2 308 27.6
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 2.4e-21 109.0 169 36.7
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 6.6e-19 100.9 375 29.6
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 6.2e-17 94.4 216 37.5
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 2.4e-16 92.4 182 29.1
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 2.0e-15 89.4 206 29.1
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 7.6e-15 87.4 182 32.4
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 9.9e-15 87.0 104 50.0
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 1.3e-14 86.7 216 35.6
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 2.1e-12 79.3 83 51.8
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.5e-12 78.6 66 51.5
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 1.3e-11 76.6 78 52.6
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 1.7e-11 76.3 82 48.8
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 3.9e-11 75.1 53 66.0
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.5e-10 73.2 137 35.0
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 3.3e-10 72.0 44 70.5
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 5.6e-10 71.2 121 31.4
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.4e-08 66.6 56 51.8
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 2.6e-07 62.4 94 38.3


User provided reference genes

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