Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_21170 Physcomitrium patens HOM05D004453 ORTHO05D005375 6.3e-123 444.1 225 100.0
Pp3c2_4610 Physcomitrium patens HOM05D004453 ORTHO05D005375 2.8e-78 295.8 219 68.0
Pp3c1_38420 Physcomitrium patens HOM05D004453 ORTHO05D005375 1.1e-71 273.9 201 69.2
Mapoly0036s0042 Marchantia polymorpha HOM05D004453 ORTHO05D005375 2.4e-53 213.0 198 54.5
AagrBONN_evm.TU.Sc2ySwM_228.4359 Anthoceros agrestis HOM05D004453 ORTHO05D005375 1.6e-49 200.3 195 54.4
SEGI_24089 Sequoiadendron giganteum HOM05D004453 ORTHO05D005375 6.5e-43 178.3 183 53.0
Dinv03791 Davidia involucrata HOM05D004453 ORTHO05D005375 1.8e-40 170.2 202 49.0
Sc13g0003960 Simmondsia chinensis HOM05D004453 ORTHO05D005375 3.0e-40 169.5 197 50.8
Ah.04g153920 Amaranthus hybridus HOM05D004453 ORTHO05D005375 3.9e-40 169.1 192 50.5
SMO271G0148 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.1e-40 168.7 181 50.3
AUR62042621 Chenopodium quinoa HOM05D004453 ORTHO05D005375 6.7e-40 168.3 222 46.4
MBI19_g09317_MAGBIO Magnolia biondii HOM05D004453 ORTHO05D005375 1.9e-39 166.8 185 50.8
AUR62040892 Chenopodium quinoa HOM05D001653 ORTHO05D001751 3.3e-39 166.0 222 45.9
ATR0068G064 Amborella trichopoda HOM05D004453 ORTHO05D005375 4.3e-39 165.6 187 48.7
TWI34G0101 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 7.4e-39 164.9 197 49.2
SMO203G0107 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 3.7e-38 162.5 209 44.0
TWI60G0130 Tripterygium wilfordii HOM05D004453 ORTHO05D005375 3.7e-38 162.5 196 49.0
Dinv13490 Davidia involucrata HOM05D004453 ORTHO05D005375 4.8e-38 162.2 197 47.7
Eucgr.B03584 Eucalyptus grandis HOM05D004453 ORTHO05D005375 6.3e-38 161.8 182 49.5
CSS0040072 Camellia sinensis var. sinensis HOM05D004453 ORTHO05D005375 1.1e-37 161.0 199 47.7
PGR119G0742 Punica granatum HOM05D004453 ORTHO05D005375 1.1e-37 161.0 179 52.5
Os07g0223700 Oryza sativa ssp. japonica HOM05D004453 ORTHO05D005375 1.4e-37 160.6 178 48.9
PSO384G0395 Papaver somniferum HOM05D004453 ORTHO05D005375 1.4e-37 160.6 204 46.1
TAR623G1190 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.4e-37 160.6 194 48.5
PSO339G2035 Papaver somniferum HOM05D004453 ORTHO05D005375 3.1e-37 159.5 204 45.6
Rhsim01G0183700 Rhododendron simsii HOM05D004453 ORTHO05D005375 4.1e-37 159.1 195 47.7
vmacro12597 Vaccinium macrocarpon HOM05D004453 ORTHO05D005375 9.0e-37 157.9 195 48.2
FAN25G0403 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.2e-36 157.5 200 50.0
TAR369G0719 Trochodendron aralioides HOM05D004453 ORTHO05D005375 1.2e-36 157.5 193 47.2
Zm00001eb303530 Zea mays HOM05D004453 ORTHO05D005375 1.2e-36 157.5 178 50.0
Eucgr.J01746 Eucalyptus grandis HOM05D004453 ORTHO05D005375 1.5e-36 157.1 181 50.8
TPR.G34071 Trifolium pratense HOM05D004453 ORTHO05D005375 1.5e-36 157.1 184 50.0
GSVIVG01025506001 Vitis vinifera HOM05D004453 ORTHO05D005375 1.5e-36 157.1 197 48.2
Atru.chr4.902 Acer truncatum HOM05D004453 ORTHO05D005375 2.0e-36 156.8 186 47.8
HPP92_000788 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.0e-36 156.8 219 43.8
Cpa.g.sc119.21 Carica papaya HOM05D004453 ORTHO05D005375 2.6e-36 156.4 195 47.7
Nn2g15897 Nelumbo nucifera HOM05D004453 ORTHO05D005375 2.6e-36 156.4 194 49.0
FAN16G2113 Fragaria x ananassa HOM05D004453 ORTHO05D005375 4.5e-36 155.6 200 49.0
Prupe.6G001400 Prunus persica HOM05D004453 ORTHO05D005375 4.5e-36 155.6 185 50.8
HPP92_026813 Vanilla planifolia HOM05D004453 ORTHO05D005375 4.5e-36 155.6 219 43.8
Oeu023964.1 Olea europaea HOM05D004453 ORTHO05D005375 5.9e-36 155.2 195 46.2
RcHm_v2.0_Chr5g0084051 Rosa chinensis HOM05D004453 ORTHO05D005375 5.9e-36 155.2 198 48.5
Manes.16G034900 Manihot esculenta HOM05D004453 ORTHO05D005375 7.6e-36 154.8 196 46.4
PGR102G2973 Punica granatum HOM05D004453 ORTHO05D005375 7.6e-36 154.8 185 49.2
EL10Ac7g17533 Beta vulgaris HOM05D004453 ORTHO05D005375 1.0e-35 154.5 222 43.2
Ciclev10016282m.g Citrus clementina HOM05D004453 ORTHO05D005375 1.0e-35 154.5 185 50.8
Cc01_g00270 Coffea canephora HOM05D004453 ORTHO05D005375 1.0e-35 154.5 184 48.9
Medtr4g083300 Medicago truncatula HOM05D004453 ORTHO05D005375 1.0e-35 154.5 184 48.9
arahy.Tifrunner.gnm1.ann1.C35Y2E Arachis hypogaea HOM05D004453 ORTHO05D005375 1.3e-35 154.1 196 48.0
arahy.Tifrunner.gnm1.ann1.GHD6QC Arachis hypogaea HOM05D004453 ORTHO05D005375 1.3e-35 154.1 196 48.0
FvH4_3g45940 Fragaria vesca HOM05D004453 ORTHO05D005375 1.3e-35 154.1 198 48.5
FAN11G3564 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.3e-35 154.1 198 48.5
FAN21G0323 Fragaria x ananassa HOM05D004453 ORTHO05D005375 1.3e-35 154.1 198 48.5
Lj4g0023466 Lotus japonicus HOM05D004453 ORTHO05D005375 1.3e-35 154.1 184 49.5
MD11G1001200 Malus domestica HOM05D004453 ORTHO05D005375 2.9e-35 152.9 198 47.5
DCAR_023824 Daucus carota HOM05D004453 ORTHO05D005375 3.8e-35 152.5 189 46.6
Hund01806 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.8e-35 152.5 220 44.1
ECA238G2653 Erigeron canadensis HOM05D004453 ORTHO05D005375 5.0e-35 152.1 195 45.6
Psat7g133480 Pisum sativum HOM05D004453 ORTHO05D005375 5.0e-35 152.1 184 49.5
Nn7g35809 Nelumbo nucifera HOM05D004453 ORTHO05D005375 6.5e-35 151.8 207 45.4
Actinidia16228 Actinidia chinensis HOM05D004453 ORTHO05D005375 8.4e-35 151.4 186 46.8
MD03G1001500 Malus domestica HOM05D004453 ORTHO05D005375 8.4e-35 151.4 200 46.0
Cfa009532 Carpinus fangiana HOM05D004453 ORTHO05D005375 1.1e-34 151.0 198 46.0
Lalb_Chr16g0385441 Lupinus albus HOM05D004453 ORTHO05D005375 1.1e-34 151.0 194 46.9
Sed0012812 Sechium edule HOM05D004453 ORTHO05D005375 1.9e-34 150.2 197 46.2
Ca_18793_v3 Cicer arietinum L. HOM05D004453 ORTHO05D005375 2.5e-34 149.8 184 49.5
Gohir.A03G021700 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.2e-34 149.4 211 46.4
HanXRQChr14g0437111 Helianthus annuus HOM05D004453 ORTHO05D005375 3.2e-34 149.4 196 45.9
CDE04G0921 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.2e-34 149.1 180 45.6
QL01p007925 Quercus lobata HOM05D004453 ORTHO05D005375 4.2e-34 149.1 178 48.3
Potri.001G001400 Populus trichocarpa HOM05D004453 ORTHO05D005375 5.5e-34 148.7 183 47.0
Glyma.20G024900 Glycine max HOM05D004453 ORTHO05D005375 7.2e-34 148.3 184 48.9
THA.LOC104815673 Tarenaya hassleriana HOM05D004453 ORTHO05D005375 7.2e-34 148.3 195 45.1
Carub.0001s4404 Capsella rubella HOM05D004453 ORTHO05D005375 9.3e-34 147.9 195 47.2
ClCG02G024480 Citrullus lanatus HOM05D004453 ORTHO05D005375 9.3e-34 147.9 197 44.7
CsaV3_4G017680 Cucumis sativus L. HOM05D004453 ORTHO05D005375 1.2e-33 147.5 184 47.3
Solyc01g050070.4 Solanum lycopersicum HOM05D004453 ORTHO05D005375 1.2e-33 147.5 197 43.7
A05p17380 Brassica napus HOM05D004453 ORTHO05D005375 2.1e-33 146.7 192 45.8
Sp1g41150 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.1e-33 146.7 196 44.9
Manes.17G052200 Manihot esculenta HOM05D004453 ORTHO05D005375 2.7e-33 146.4 198 43.9
Sabra01G0001000 Salix brachista HOM05D004453 ORTHO05D005375 2.7e-33 146.4 185 47.0
Sopen01g019490 Solanum pennellii HOM05D004453 ORTHO05D005375 2.7e-33 146.4 197 43.1
Peaxi162Scf00186g01212 Petunia axillaris HOM05D004453 ORTHO05D005375 3.5e-33 146.0 195 43.6
AL1G63560 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 4.6e-33 145.6 195 45.6
CDE02G3000 Ceratophyllum demersum HOM05D004453 ORTHO05D005375 4.6e-33 145.6 180 44.4
Migut.N00531 Erythranthe guttata HOM05D004453 ORTHO05D005375 4.6e-33 145.6 190 45.3
BcaC08g44204 Brassica carinata HOM05D004453 ORTHO05D005375 6.1e-33 145.2 195 46.2
BolC6t36812H Brassica oleracea HOM05D004453 ORTHO05D005375 6.1e-33 145.2 195 46.2
AT1G55535 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 7.9e-33 144.8 195 45.6
Thhalv10011735m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 1.0e-32 144.4 195 45.1
Glyma.07G225000 Glycine max HOM05D004453 ORTHO05D005375 1.0e-32 144.4 184 48.4
Duzib150G1073 Durio zibethinus HOM05D004453 ORTHO05D005375 1.3e-32 144.1 212 43.4
CARHR045220 Cardamine hirsuta HOM05D004453 ORTHO05D005375 2.3e-32 143.3 195 45.1
Aqoxy1G00087 Aquilegia oxysepala HOM05D004453 ORTHO05D005375 3.0e-32 142.9 178 46.6
Gohir.D03G147000 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.0e-32 142.9 208 45.2
PSO675G3694 Papaver somniferum HOM05D004453 ORTHO05D005375 3.0e-32 142.9 195 44.1
Thecc.09G205600 Theobroma cacao HOM05D004453 ORTHO05D005375 3.0e-32 142.9 197 43.7
Gohir.D08G020800 Gossypium hirsutum HOM05D004453 ORTHO05D005375 3.9e-32 142.5 189 45.5
Gorai.004G020100 Gossypium raimondii HOM05D004453 ORTHO05D005375 3.9e-32 142.5 189 45.5
Phvul.002G101400 Phaseolus vulgaris HOM05D004453 ORTHO05D005375 5.1e-32 142.1 184 46.7
Gohir.A08G014200 Gossypium hirsutum HOM05D004453 ORTHO05D005375 8.7e-32 141.4 189 45.0
Gorai.003G154400 Gossypium raimondii HOM05D004453 ORTHO05D005375 8.7e-32 141.4 208 44.7
A08p00560 Brassica napus HOM05D004453 ORTHO05D005375 1.1e-31 141.0 213 42.3
MELO3C031044.2 Cucumis melo HOM05D004453 ORTHO05D005375 1.1e-31 141.0 186 46.2
Lalb_Chr05g0219881 Lupinus albus HOM05D004453 ORTHO05D005375 1.1e-31 141.0 184 45.7
C06p16140 Brassica napus HOM05D004453 ORTHO05D005375 1.5e-31 140.6 195 46.2
PSO541G5087 Papaver somniferum HOM05D004453 ORTHO05D005375 1.5e-31 140.6 195 43.1
CiPaw.13G179200 Carya illinoinensis HOM05D004453 ORTHO05D005375 1.9e-31 140.2 162 47.5
BcaC01g01533 Brassica carinata HOM05D004453 ORTHO05D005375 2.5e-31 139.8 199 45.2
VMungo0251G3504 Vigna mungo HOM05D004453 ORTHO05D005375 2.5e-31 139.8 184 47.8
C03p92850 Brassica napus HOM05D004453 ORTHO05D005375 3.3e-31 139.4 198 44.9
BolC3t21591H Brassica oleracea HOM05D004453 ORTHO05D005375 3.3e-31 139.4 198 44.9
COL.COLO4_35070 Corchorus olitorius HOM05D004453 ORTHO05D005375 3.3e-31 139.4 211 42.7
BraA08t32115Z Brassica rapa HOM05D004453 ORTHO05D005375 4.3e-31 139.0 213 41.8
ECA248G0105 Erigeron canadensis HOM05D004453 ORTHO05D005375 4.3e-31 139.0 182 44.5
BcaB02g10815 Brassica carinata HOM05D004453 ORTHO05D005375 1.3e-30 137.5 195 43.6
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.1e-29 134.4 181 46.4
Lsat_1_v5_gn_2_50660 Lactuca sativa HOM05D004453 ORTHO05D005375 5.3e-29 132.1 195 42.1
Haze_22921 Corylus avellana HOM05D004453 ORTHO05D005375 6.9e-29 131.7 162 48.8
Lsat_1_v5_gn_1_71301 Lactuca sativa HOM05D004453 ORTHO05D005375 1.2e-28 131.0 209 40.7
MSTRG.18889 Avicennia marina HOM05D004453 ORTHO05D005375 1.5e-28 130.6 199 45.2
SGA_v2.0_scaffold6G03329 Striga asiatica HOM05D004453 ORTHO05D005375 1.5e-28 130.6 191 44.0
Potri.003G223300 Populus trichocarpa HOM05D004453 ORTHO05D005375 5.9e-28 128.6 207 42.5
SGA_v2.0_scaffold3G01700 Striga asiatica HOM05D004453 ORTHO05D005375 5.9e-28 128.6 199 42.7
Thhalv10021458m.g Eutrema salsugineum HOM05D004453 ORTHO05D005375 2.9e-27 126.3 131 52.7
SMO353G0048 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 5.0e-27 125.6 195 40.5
AL3G25290 Arabidopsis lyrata HOM05D004453 ORTHO05D005375 1.1e-26 124.4 152 50.0
CARHR088030 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.1e-26 124.4 204 42.2
Aa31LG10G710 Aethionema arabicum HOM05D004453 ORTHO05D005375 1.4e-26 124.0 181 43.6
Aa31LG8G630 Aethionema arabicum HOM05D004453 ORTHO05D005375 4.2e-26 122.5 181 41.4
unitig_62.g23532 Utricularia gibba HOM05D004453 ORTHO05D005375 5.5e-26 122.1 180 43.9
AT3G13420 Arabidopsis thaliana HOM05D004453 ORTHO05D005375 9.4e-26 121.3 131 51.9
C05p54480 Brassica napus HOM05D004453 ORTHO05D005375 1.2e-25 120.9 149 45.6
BolC5t34115H Brassica oleracea HOM05D004453 ORTHO05D005375 1.2e-25 120.9 149 45.6
A05p36110 Brassica napus HOM05D004453 ORTHO05D005375 1.6e-25 120.6 149 45.0
SalBow3G0087 Salvia bowleyana HOM05D004453 ORTHO05D005375 1.6e-25 120.6 176 40.9
BcaC05g29180 Brassica carinata HOM05D004453 ORTHO05D005375 2.7e-25 119.8 129 50.4
Sp3g11610 Schrenkiella parvula HOM05D004453 ORTHO05D005375 2.7e-25 119.8 125 52.0
Carub.0003s1279 Capsella rubella HOM05D004453 ORTHO05D005375 1.0e-24 117.9 151 47.0
BraA05t20635Z Brassica rapa HOM05D004453 ORTHO05D005375 3.7e-22 109.4 143 46.9
Nitab4.5_0002355g0020 Nicotiana tabacum HOM05D004453 ORTHO05D005375 3.7e-22 109.4 195 36.9
unitig_52.g17526 Utricularia gibba HOM05D004453 ORTHO05D005375 6.9e-21 105.1 179 41.9
CARHR152870 Cardamine hirsuta HOM05D004453 ORTHO05D005375 1.5e-20 104.0 113 52.2
Lj1C553T1 Lonicera japonica HOM05D004453 ORTHO05D005375 1.5e-20 104.0 93 57.0
SHI06880 Sapria himalayana HOM05D004453 ORTHO05D005375 1.7e-19 100.5 166 40.4
Actinidia30440 Actinidia chinensis HOM05D004453 ORTHO05D005375 1.4e-18 97.4 96 56.2
SHI31305 Sapria himalayana HOM05D004453 ORTHO05D005375 1.9e-18 97.1 181 37.0
Nitab4.5_0000075g0210 Nicotiana tabacum HOM05D004453 ORTHO05D005375 1.1e-15 87.8 195 31.8
HPP92_019023 Vanilla planifolia HOM05D004453 ORTHO05D005375 2.2e-14 83.6 83 50.6
CBR_g35002 Chara braunii HOM05D000321 ORTHO05D000204 1.0e-11 74.7 71 59.2
SMO308G0081 Selaginella moellendorffii HOM05D004453 ORTHO05D005375 1.2e-09 67.8 89 43.8
AagrBONN_evm.TU.Sc2ySwM_369.347 Anthoceros agrestis HOM05D004453 ORTHO05D075236 1.6e-09 67.4 131 37.4
Lj1C553T2 Lonicera japonica HOM05D004453 ORTHO05D005375 1.4e-08 64.3 113 38.9
Zm00001eb095200 Zea mays HOM05D004453 ORTHO05D005375 8.8e-08 61.6 77 49.4
CBR_g37640 Chara braunii HOM05D004453 ORTHO05D005375 7.5e-07 58.5 116 31.9


User provided reference genes

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