Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 0.0e+00 1075.5 541 100.0
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 7.0e-237 823.9 539 77.9
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 3.2e-197 692.2 494 68.6
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 4.3e-178 628.6 494 60.5
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 8.2e-169 597.8 496 59.9
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 2.4e-168 596.3 477 60.0
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 2.2e-166 589.7 474 59.5
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 3.2e-165 585.9 489 57.3
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 3.2e-165 585.9 477 60.0
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 4.2e-165 585.5 474 59.7
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 1.2e-164 583.9 474 59.5
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 2.7e-164 582.8 473 59.4
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 2.7e-164 582.8 480 59.6
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 3.6e-164 582.4 476 59.9
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 4.7e-164 582.0 475 59.2
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 4.7e-164 582.0 475 58.9
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 6.1e-164 581.6 474 59.5
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 1.4e-163 580.5 507 57.2
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 1.4e-163 580.5 492 56.5
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.4e-163 580.5 474 59.1
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 1.8e-163 580.1 491 58.2
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 3.0e-163 579.3 474 59.1
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 3.9e-163 578.9 474 59.1
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 3.9e-163 578.9 493 58.2
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 8.8e-163 577.8 475 57.9
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 1.1e-162 577.4 510 56.1
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 1.1e-162 577.4 476 58.8
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.5e-162 577.0 489 57.5
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 2.6e-162 576.2 476 58.4
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 2.6e-162 576.2 474 59.1
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 3.3e-162 575.9 473 59.4
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 3.3e-162 575.9 475 58.5
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 3.3e-162 575.9 473 59.0
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 4.4e-162 575.5 475 58.9
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 7.4e-162 574.7 487 58.3
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 7.4e-162 574.7 473 59.0
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 9.7e-162 574.3 475 58.9
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 9.7e-162 574.3 473 58.6
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 1.3e-161 573.9 476 58.8
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 1.7e-161 573.5 474 59.3
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 2.2e-161 573.2 476 58.8
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 2.2e-161 573.2 476 58.4
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 2.2e-161 573.2 475 57.9
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 2.8e-161 572.8 476 58.4
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 4.8e-161 572.0 473 60.7
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 4.8e-161 572.0 476 58.4
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 4.8e-161 572.0 473 58.6
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 4.8e-161 572.0 474 58.4
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 4.8e-161 572.0 473 58.6
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 4.8e-161 572.0 491 59.3
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 6.3e-161 571.6 473 58.6
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 8.2e-161 571.2 482 57.5
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 1.1e-160 570.9 474 58.9
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 1.4e-160 570.5 476 58.0
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 1.4e-160 570.5 473 57.5
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 1.8e-160 570.1 476 58.0
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 1.8e-160 570.1 475 58.5
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 1.8e-160 570.1 473 58.6
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 3.1e-160 569.3 475 58.3
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.1e-160 569.3 476 58.2
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 3.1e-160 569.3 474 58.0
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 5.3e-160 568.5 475 58.3
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 7.0e-160 568.2 474 58.2
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 9.1e-160 567.8 473 58.1
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.2e-159 567.4 482 57.1
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.6e-159 567.0 474 58.2
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 1.6e-159 567.0 474 57.4
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 2.0e-159 566.6 475 57.7
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 2.6e-159 566.2 473 58.1
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 4.5e-159 565.5 474 57.2
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 4.5e-159 565.5 472 57.4
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 4.5e-159 565.5 473 56.4
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 1.7e-158 563.5 475 57.1
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 1.7e-158 563.5 475 57.1
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 2.2e-158 563.1 473 56.9
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 2.2e-158 563.1 473 57.1
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 2.2e-158 563.1 481 56.1
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 2.9e-158 562.8 474 57.6
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 6.5e-158 561.6 479 56.8
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.9e-157 560.1 477 57.0
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 1.9e-157 560.1 462 58.2
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 1.9e-157 560.1 502 56.4
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 2.5e-157 559.7 474 56.5
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 4.2e-157 558.9 477 57.0
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 7.2e-157 558.1 475 56.8
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 9.4e-157 557.8 479 56.2
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 2.7e-156 556.2 474 57.0
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 3.6e-156 555.8 474 56.5
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 4.7e-156 555.4 473 56.9
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 8.0e-156 554.7 473 56.9
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 2.3e-155 553.1 485 55.5
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 5.7e-154 548.5 471 56.7
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 7.5e-154 548.1 439 59.9
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 3.7e-153 545.8 475 55.6
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 1.1e-152 544.3 476 56.3
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 7.7e-151 538.1 433 60.0
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 1.0e-150 537.7 467 55.5
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 2.2e-150 536.6 475 55.4
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 2.7e-148 529.6 483 54.5
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 3.6e-148 529.3 481 53.6
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.0e-147 527.7 475 54.1
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 1.0e-147 527.7 475 54.1
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.5e-146 523.9 475 54.1
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 1.7e-145 520.4 465 55.5
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 1.4e-144 517.3 501 52.5
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 4.1e-144 515.8 479 52.8
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 5.4e-144 515.4 479 52.8
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 7.0e-144 515.0 444 57.4
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.3e-142 510.8 415 58.3
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 6.5e-142 508.4 511 52.6
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 8.6e-142 508.1 479 51.6
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 5.5e-141 505.4 425 58.1
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 6.1e-140 501.9 474 53.2
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 9.2e-136 488.0 395 60.3
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 1.2e-135 487.6 474 52.7
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 1.8e-131 473.8 474 50.6
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 2.5e-125 453.4 431 54.5
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 7.3e-125 451.8 466 51.5
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 2.2e-121 440.3 474 47.7
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 5.4e-112 409.1 440 48.9
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 6.2e-100 369.0 378 50.8
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 3.5e-95 353.2 307 58.3
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 2.4e-91 340.5 317 54.6
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 4.1e-59 233.4 482 31.7
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 1.0e-49 202.2 163 58.3
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 8.0e-39 166.0 429 25.4
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 1.8e-38 164.9 121 60.3
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 6.3e-28 129.8 108 52.8
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 8.0e-23 112.8 426 26.5
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 1.8e-19 101.7 71 62.0
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 6.6e-17 93.2 78 62.8
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 6.1e-15 86.7 484 25.4
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 3.0e-09 67.8 47 61.7
Pp3c17_15880 Physcomitrium patens HOM05D005722 ORTHO05D309356 1.6e-07 62.0 110 38.2


User provided reference genes

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