Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 6.6e-129 464.2 251 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 5.0e-36 155.6 147 56.5
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 1.3e-31 141.0 142 51.4
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 6.3e-31 138.7 149 49.7
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.4e-30 137.5 149 48.3
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 1.8e-30 137.1 163 45.4
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 1.8e-30 137.1 180 42.2
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 2.4e-30 136.7 149 49.0
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.6e-29 134.0 144 48.6
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 1.6e-29 134.0 134 51.5
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 2.0e-29 133.7 149 45.6
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 2.0e-29 133.7 140 47.1
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 4.5e-29 132.5 144 51.4
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 4.5e-29 132.5 149 45.0
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 1.0e-28 131.3 147 48.3
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.0e-28 131.3 134 49.3
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.3e-28 131.0 146 47.3
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 2.2e-28 130.2 143 47.6
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 2.2e-28 130.2 151 48.3
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 3.8e-28 129.4 150 47.3
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.0e-28 129.0 163 42.9
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 1.5e-27 127.5 128 50.8
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.5e-27 127.5 144 46.5
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 1.9e-27 127.1 149 45.6
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.5e-27 126.7 242 38.0
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 3.2e-27 126.3 159 42.1
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.2e-27 125.9 132 49.2
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 5.5e-27 125.6 146 47.3
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 5.5e-27 125.6 148 45.9
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 9.4e-27 124.8 154 44.8
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 9.4e-27 124.8 141 46.8
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 1.6e-26 124.0 156 44.2
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.7e-26 123.2 160 42.5
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 2.7e-26 123.2 130 48.5
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 4.7e-26 122.5 144 43.1
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 4.7e-26 122.5 250 36.0
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 6.1e-26 122.1 141 46.1
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 8.0e-26 121.7 141 46.1
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 8.0e-26 121.7 141 46.1
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.8e-25 120.6 179 39.1
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.8e-25 120.6 144 45.1
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 2.3e-25 120.2 132 45.5
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 2.3e-25 120.2 139 48.2
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 6.8e-25 118.6 250 35.2
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 8.8e-25 118.2 127 48.8
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.5e-24 117.5 144 41.7
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 2.0e-24 117.1 153 39.9
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 3.4e-24 116.3 145 41.4
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 1.3e-23 114.4 141 42.6
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 1.3e-23 114.4 144 42.4
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 1.7e-23 114.0 209 36.4
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 6.3e-23 112.1 126 41.3
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 6.3e-23 112.1 238 34.9
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 6.3e-23 112.1 144 41.0
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 8.3e-23 111.7 144 41.0
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 1.4e-22 110.9 124 40.3
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 5.4e-22 109.0 152 40.8
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 5.4e-22 109.0 152 40.8
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 7.0e-22 108.6 150 40.7
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 7.0e-22 108.6 111 50.5
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 9.2e-22 108.2 153 41.2
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 1.2e-21 107.8 238 34.0
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.6e-21 107.5 152 40.1
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.6e-21 107.5 159 36.5
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 3.5e-21 106.3 114 40.4
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 3.5e-21 106.3 145 36.6
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 4.5e-21 105.9 123 37.4
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 5.9e-21 105.5 242 33.5
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 5.9e-21 105.5 123 37.4
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 7.7e-21 105.1 121 41.3
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.0e-20 104.8 113 39.8
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 1.7e-20 104.0 116 42.2
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 2.3e-20 103.6 164 31.7
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 2.9e-20 103.2 157 39.5
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.9e-20 103.2 164 33.5
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 2.9e-20 103.2 114 41.2
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.8e-20 102.8 113 41.6
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 6.6e-20 102.1 116 39.7
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 6.6e-20 102.1 150 34.7
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 6.6e-20 102.1 116 39.7
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 6.6e-20 102.1 141 41.8
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 8.6e-20 101.7 115 38.3
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 1.1e-19 101.3 165 30.9
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.1e-19 101.3 116 37.1
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.1e-19 101.3 162 31.5
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 1.5e-19 100.9 165 30.9
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 1.9e-19 100.5 139 35.3
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 1.9e-19 100.5 201 33.3
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 2.5e-19 100.1 118 39.0
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 3.3e-19 99.8 114 39.5
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 4.3e-19 99.4 115 39.1
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 5.6e-19 99.0 113 39.8
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 5.6e-19 99.0 113 39.8
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 5.6e-19 99.0 137 38.7
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 7.3e-19 98.6 115 39.1
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 7.3e-19 98.6 139 35.3
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 7.3e-19 98.6 121 37.2
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 9.5e-19 98.2 164 30.5
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 9.5e-19 98.2 92 55.4
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 9.5e-19 98.2 119 36.1
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 9.5e-19 98.2 148 35.8
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.2e-18 97.8 117 42.7
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.2e-18 97.8 116 37.1
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 1.2e-18 97.8 116 38.8
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 1.2e-18 97.8 116 37.1
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.2e-18 97.8 121 36.4
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.2e-18 97.8 121 36.4
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 1.2e-18 97.8 189 31.7
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.6e-18 97.4 230 37.0
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 1.6e-18 97.4 122 38.5
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 2.1e-18 97.1 115 38.3
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 2.1e-18 97.1 151 35.1
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 2.8e-18 96.7 190 29.5
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 2.8e-18 96.7 172 36.6
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 2.8e-18 96.7 182 31.9
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 3.6e-18 96.3 116 39.7
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 3.6e-18 96.3 141 34.0
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 4.7e-18 95.9 122 37.7
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 6.1e-18 95.5 175 30.3
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 6.1e-18 95.5 120 36.7
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 8.0e-18 95.1 174 29.9
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 8.0e-18 95.1 116 37.9
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.0e-17 94.7 105 44.8
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.0e-17 94.7 105 44.8
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 1.0e-17 94.7 122 36.9
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 1.0e-17 94.7 142 35.2
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 1.8e-17 94.0 157 35.0
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 2.3e-17 93.6 115 38.3
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 2.3e-17 93.6 153 34.0
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 2.3e-17 93.6 162 34.0
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 5.2e-17 92.4 130 36.9
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 8.9e-17 91.7 120 43.3
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 1.5e-16 90.9 132 33.3
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 1.5e-16 90.9 105 44.8
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 1.5e-16 90.9 168 32.1
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 2.0e-16 90.5 144 34.0
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 2.0e-16 90.5 175 31.4
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 2.0e-16 90.5 102 38.2
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 2.6e-16 90.1 147 38.8
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.6e-16 90.1 158 37.3
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 3.4e-16 89.7 95 42.1
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 2.2e-15 87.0 118 35.6
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.7e-15 86.3 180 30.6
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 6.4e-15 85.5 143 29.4
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 1.1e-14 84.7 155 32.3
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 2.4e-14 83.6 248 30.2
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 3.2e-14 83.2 160 29.4
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 1.2e-13 81.3 116 33.6
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 5.9e-13 79.0 220 25.9
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 3.3e-11 73.2 85 45.9
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 7.3e-11 72.0 270 25.6
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.8e-10 70.1 239 30.5
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.6e-10 69.7 95 46.3
Haze_01372 Corylus avellana HOM05D003796 ORTHO05D004486 1.0e-09 68.2 103 35.9
CSS0030237 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 1.8e-09 67.4 72 38.9
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 5.8e-08 62.4 148 33.8
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 7.5e-08 62.0 67 46.3
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.2e-07 60.5 94 37.2
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.2e-07 60.5 75 41.3
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 2.9e-07 60.1 104 33.7
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.7e-07 59.7 75 41.3
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 3.7e-07 59.7 104 33.7
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 4.9e-07 59.3 68 42.6
Phvul.005G006800 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 3.2e-06 56.6 72 36.1
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 5.4e-06 55.8 64 48.4
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 5.4e-06 55.8 64 48.4


User provided reference genes

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