Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_20080 Physcomitrium patens HOM05D006682 ORTHO05D008627 3.1e-176 621.7 318 100.0
Mapoly0003s0021 Marchantia polymorpha HOM05D006682 ORTHO05D008627 4.6e-79 298.9 226 65.9
Rhsim13G0223700 Rhododendron simsii HOM05D006682 ORTHO05D008627 8.2e-60 235.0 192 59.9
Ciclev10012386m.g Citrus clementina HOM05D006682 ORTHO05D008627 2.0e-58 230.3 195 57.4
Manes.06G166600 Manihot esculenta HOM05D006682 ORTHO05D008627 2.6e-58 229.9 203 58.1
Thecc.05G010600 Theobroma cacao HOM05D006682 ORTHO05D008627 2.6e-58 229.9 200 59.5
Ah.13g066750 Amaranthus hybridus HOM05D006682 ORTHO05D008627 7.7e-58 228.4 175 65.1
COL.COLO4_14494 Corchorus olitorius HOM05D006682 ORTHO05D008627 1.3e-57 227.6 202 58.4
Gohir.A01G228400 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.3e-57 227.6 234 53.0
Gohir.D01G218300 Gossypium hirsutum HOM05D006682 ORTHO05D008627 1.7e-57 227.3 195 59.5
Gorai.002G265000 Gossypium raimondii HOM05D006682 ORTHO05D008627 1.7e-57 227.3 195 59.5
EL10Ac3g05849 Beta vulgaris HOM05D006682 ORTHO05D008627 2.9e-57 226.5 175 64.6
Nn3g18894 Nelumbo nucifera HOM05D006682 ORTHO05D008627 3.8e-57 226.1 189 60.8
TWI38G0692 Tripterygium wilfordii HOM05D006682 ORTHO05D008627 3.8e-57 226.1 209 56.5
Eucgr.B03679 Eucalyptus grandis HOM05D006682 ORTHO05D008627 5.0e-57 225.7 250 51.6
TAR623G0191 Trochodendron aralioides HOM05D006682 ORTHO05D008627 5.0e-57 225.7 185 61.1
TAR623G0396 Trochodendron aralioides HOM05D006682 ORTHO05D008627 5.0e-57 225.7 185 61.1
Sc16g0009700 Simmondsia chinensis HOM05D006682 ORTHO05D008627 1.4e-56 224.2 190 60.0
Cpa.g.sc12.111 Carica papaya HOM05D006682 ORTHO05D008627 1.9e-56 223.8 186 59.7
Duzib128G1702 Durio zibethinus HOM05D006682 ORTHO05D008627 1.9e-56 223.8 195 59.0
Cpa.g.sc21.74 Carica papaya HOM05D006682 ORTHO05D008627 3.2e-56 223.0 185 60.0
Lalb_Chr08g0245621 Lupinus albus HOM05D006682 ORTHO05D008627 3.2e-56 223.0 229 54.6
CSS0008647 Camellia sinensis var. sinensis HOM05D006682 ORTHO05D008627 4.2e-56 222.6 189 60.3
Dinv36276 Davidia involucrata HOM05D006682 ORTHO05D008627 4.2e-56 222.6 187 58.8
QL01p005270 Quercus lobata HOM05D006682 ORTHO05D008627 5.5e-56 222.2 202 55.9
MSTRG.18416 Avicennia marina HOM05D006682 ORTHO05D008627 7.2e-56 221.9 203 55.7
CsaV3_1G042700 Cucumis sativus L. HOM05D006682 ORTHO05D008627 7.2e-56 221.9 193 59.1
Aa31sc655G20 Aethionema arabicum HOM05D006682 ORTHO05D008627 9.4e-56 221.5 191 58.1
CANSAT80G0450 Cannabis sativa HOM05D006682 ORTHO05D008627 9.4e-56 221.5 185 60.0
PGR102G2323 Punica granatum HOM05D006682 ORTHO05D008627 1.2e-55 221.1 197 57.9
ClCG03G013350 Citrullus lanatus HOM05D006682 ORTHO05D008627 1.6e-55 220.7 191 59.2
MBI13_g31544_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.1e-55 220.3 194 58.8
MD11G1029300 Malus domestica HOM05D006682 ORTHO05D008627 2.1e-55 220.3 189 59.3
VMungo1127G1130 Vigna mungo HOM05D006682 ORTHO05D008627 2.1e-55 220.3 204 57.4
MD03G1024200 Malus domestica HOM05D006682 ORTHO05D008627 2.7e-55 219.9 191 58.6
BcaB01g00416 Brassica carinata HOM05D006682 ORTHO05D008627 3.6e-55 219.5 196 57.1
MELO3C015204.2 Cucumis melo HOM05D006682 ORTHO05D008627 3.6e-55 219.5 193 58.5
THA.LOC104807019 Tarenaya hassleriana HOM05D006682 ORTHO05D008627 3.6e-55 219.5 193 59.1
Lj1A355T5 Lonicera japonica HOM05D006682 ORTHO05D008627 4.7e-55 219.2 187 57.2
arahy.Tifrunner.gnm1.ann1.1N3H6Z Arachis hypogaea HOM05D006682 ORTHO05D008627 6.1e-55 218.8 198 58.1
CiPaw.13G163300 Carya illinoinensis HOM05D006682 ORTHO05D008627 6.1e-55 218.8 233 52.4
Hma1.2p1_0401F.1_g144700 Hydrangea macrophylla HOM05D006682 ORTHO05D008627 8.0e-55 218.4 175 60.6
Sp5g10480 Schrenkiella parvula HOM05D006682 ORTHO05D008627 8.0e-55 218.4 183 59.6
BcaB01g00476 Brassica carinata HOM05D006682 ORTHO05D008627 1.0e-54 218.0 189 57.7
A09p44960 Brassica napus HOM05D006682 ORTHO05D008627 1.0e-54 218.0 189 57.7
BolC8t50319H Brassica oleracea HOM05D006682 ORTHO05D008627 1.0e-54 218.0 189 57.7
BraA09t39955Z Brassica rapa HOM05D006682 ORTHO05D008627 1.0e-54 218.0 189 57.7
FAN11G1823 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.0e-54 218.0 192 58.9
RcHm_v2.0_Chr5g0077121 Rosa chinensis HOM05D006682 ORTHO05D008627 1.0e-54 218.0 179 60.9
SalBow5G1085 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.0e-54 218.0 195 54.9
SalBow8G0417 Salvia bowleyana HOM05D006682 ORTHO05D008627 1.0e-54 218.0 195 54.9
CARHR161420 Cardamine hirsuta HOM05D006682 ORTHO05D008627 1.4e-54 217.6 197 55.3
FvH4_3g43060 Fragaria vesca HOM05D006682 ORTHO05D008627 1.4e-54 217.6 192 58.9
FAN21G3201 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.4e-54 217.6 192 58.9
FAN25G2895 Fragaria x ananassa HOM05D006682 ORTHO05D008627 1.4e-54 217.6 192 58.9
Sed0028089 Sechium edule HOM05D006682 ORTHO05D008627 1.4e-54 217.6 178 60.7
FAN16G2773 Fragaria x ananassa HOM05D006682 ORTHO05D008627 2.3e-54 216.9 192 58.3
AT3G51790 Arabidopsis thaliana HOM05D006682 ORTHO05D008627 3.0e-54 216.5 196 56.1
SEGI_12993 Sequoiadendron giganteum HOM05D006682 ORTHO05D008627 3.0e-54 216.5 206 55.3
C08p27040 Brassica napus HOM05D006682 ORTHO05D008627 3.9e-54 216.1 189 57.1
Haze_23101 Corylus avellana HOM05D006682 ORTHO05D008627 3.9e-54 216.1 241 51.0
arahy.Tifrunner.gnm1.ann1.11YZMF Arachis hypogaea HOM05D006682 ORTHO05D008627 5.2e-54 215.7 198 57.1
Sabra03G0151700 Salix brachista HOM05D006682 ORTHO05D008627 5.2e-54 215.7 191 58.1
Actinidia16314 Actinidia chinensis HOM05D006682 ORTHO05D008627 8.8e-54 214.9 208 54.3
Potri.003G205200 Populus trichocarpa HOM05D006682 ORTHO05D008627 8.8e-54 214.9 192 57.8
Solyc09g005870.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 1.1e-53 214.5 266 48.1
CAN.G350.11 Capsicum annuum HOM05D006682 ORTHO05D008627 1.5e-53 214.2 187 56.1
Cfa009742 Carpinus fangiana HOM05D006682 ORTHO05D008627 2.0e-53 213.8 190 57.9
AL5G32250 Arabidopsis lyrata HOM05D006682 ORTHO05D008627 2.6e-53 213.4 282 44.7
Glyma.11G132200 Glycine max HOM05D006682 ORTHO05D008627 2.6e-53 213.4 200 55.5
Prupe.6G023600 Prunus persica HOM05D006682 ORTHO05D008627 2.6e-53 213.4 189 57.7
Aqoxy2G00055 Aquilegia oxysepala HOM05D006682 ORTHO05D008627 3.3e-53 213.0 177 59.9
Thhalv10010653m.g Eutrema salsugineum HOM05D006682 ORTHO05D008627 3.3e-53 213.0 265 46.8
Phvul.011G058400 Phaseolus vulgaris HOM05D006682 ORTHO05D008627 3.3e-53 213.0 192 58.9
Migut.O00578 Erythranthe guttata HOM05D006682 ORTHO05D008627 4.4e-53 212.6 180 58.9
Sopen03g006750 Solanum pennellii HOM05D006682 ORTHO05D008627 4.4e-53 212.6 266 48.1
Sopen09g001750 Solanum pennellii HOM05D006682 ORTHO05D008627 4.4e-53 212.6 266 47.7
ECA233G5908 Erigeron canadensis HOM05D006682 ORTHO05D008627 7.4e-53 211.8 185 56.2
Lsat_1_v5_gn_8_74980 Lactuca sativa HOM05D006682 ORTHO05D008627 7.4e-53 211.8 207 52.2
CDE03G0115 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 9.7e-53 211.5 193 57.0
Cc00_g20370 Coffea canephora HOM05D006682 ORTHO05D008627 9.7e-53 211.5 215 51.6
Lj3g0017048 Lotus japonicus HOM05D006682 ORTHO05D008627 1.7e-52 210.7 178 61.8
Solyc03g033990.1 Solanum lycopersicum HOM05D006682 ORTHO05D008627 1.7e-52 210.7 266 47.7
CDE04G1557 Ceratophyllum demersum HOM05D006682 ORTHO05D008627 3.7e-52 209.5 189 57.7
SHI11277 Sapria himalayana HOM05D006682 ORTHO05D008627 4.8e-52 209.1 193 57.5
Glyma.12G056800 Glycine max HOM05D006682 ORTHO05D008627 6.3e-52 208.8 200 55.0
PGSC0003DMG400023913 Solanum tuberosum HOM05D006682 ORTHO05D008627 8.2e-52 208.4 248 48.0
SGA_v2.0_scaffold42G16114 Striga asiatica HOM05D006682 ORTHO05D008627 1.4e-51 207.6 216 49.5
Nitab4.5_0002026g0020 Nicotiana tabacum HOM05D006682 ORTHO05D008627 1.8e-51 207.2 268 46.6
ATR0605G320 Amborella trichopoda HOM05D006682 ORTHO05D008627 2.4e-51 206.8 189 55.6
Medtr4g065610 Medicago truncatula HOM05D006682 ORTHO05D008627 2.4e-51 206.8 184 57.6
PGSC0003DMG400009816 Solanum tuberosum HOM05D006682 ORTHO05D008627 3.1e-51 206.5 266 47.0
HPP92_017841 Vanilla planifolia HOM05D006682 ORTHO05D008627 4.1e-51 206.1 187 58.3
Zm00001eb022720 Zea mays HOM05D006682 ORTHO05D008627 7.0e-51 205.3 187 56.1
DCAR_014742 Daucus carota HOM05D006682 ORTHO05D008627 2.6e-50 203.4 165 58.8
Manes.14G001136 Manihot esculenta HOM05D006682 ORTHO05D008627 2.6e-50 203.4 178 59.0
Psat7g213040 Pisum sativum HOM05D006682 ORTHO05D008627 2.6e-50 203.4 200 53.5
Ca_20573_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 4.5e-50 202.6 174 59.8
Ca_30508_v3 Cicer arietinum L. HOM05D006682 ORTHO05D008627 4.5e-50 202.6 174 59.8
Os10g0545800 Oryza sativa ssp. japonica HOM05D006682 ORTHO05D008627 5.9e-50 202.2 179 58.7
Zm00001eb394030 Zea mays HOM05D006682 ORTHO05D008627 1.3e-49 201.1 209 51.7
AUR62015492 Chenopodium quinoa HOM05D006682 ORTHO05D008627 2.9e-49 199.9 166 61.4
SGA_v2.0_scaffold4G02325 Striga asiatica HOM05D006682 ORTHO05D008627 4.2e-48 196.1 213 49.3
PSO339G5979 Papaver somniferum HOM05D006682 ORTHO05D008627 2.3e-46 190.3 178 54.5
PSO384G2735 Papaver somniferum HOM05D006682 ORTHO05D008627 4.0e-46 189.5 185 52.4
TPR.G35025 Trifolium pratense HOM05D006682 ORTHO05D008627 4.4e-45 186.0 189 52.4
Lj3P268T21 Lonicera japonica HOM05D006682 ORTHO05D008627 9.1e-43 178.3 152 57.9
AUR62002207 Chenopodium quinoa HOM05D006072 ORTHO05D007363 1.7e-41 174.1 137 62.8
unitig_26.g10134 Utricularia gibba HOM05D006682 ORTHO05D008627 7.2e-40 168.7 192 49.0
Psat7g244600 Pisum sativum HOM05D006682 ORTHO05D008627 4.0e-38 162.9 120 63.3
HanXRQChr17g0534121 Helianthus annuus HOM05D006682 ORTHO05D008627 1.6e-31 141.0 119 54.6
Nitab4.5_0000492g0110 Nicotiana tabacum HOM05D006682 ORTHO05D008627 6.8e-22 109.0 131 49.6
CBR_g49937 Chara braunii HOM05D000019 ORTHO05D000002 4.4e-21 106.3 76 61.8
CBR_g49935 Chara braunii HOM05D000019 ORTHO05D000048 9.8e-21 105.1 173 43.4
GSVIVG01025303001 Vitis vinifera HOM05D006682 ORTHO05D008627 3.7e-20 103.2 97 56.7
EL10Ac6g14324 Beta vulgaris HOM05D006682 ORTHO05D007363 1.5e-16 91.3 74 56.8
Carub.0005s1814 Capsella rubella HOM05D006682 ORTHO05D008627 1.5e-13 81.3 146 34.9
MBI13_g31542_MAGBIO Magnolia biondii HOM05D006682 ORTHO05D008627 2.7e-10 70.5 71 49.3
Peaxi162Scf00029g00296 Petunia axillaris HOM05D006682 ORTHO05D008627 8.1e-07 58.9 46 58.7


User provided reference genes

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