Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_20020 Physcomitrium patens HOM05D003913 ORTHO05D004803 3.8e-134 482.3 413 100.0
Mapoly0155s0005 Marchantia polymorpha HOM05D003913 ORTHO05D004803 2.2e-52 210.7 386 45.6
Lj5g0008809 Lotus japonicus HOM05D003913 ORTHO05D004803 2.4e-51 207.2 398 39.4
Lalb_Chr20g0121511 Lupinus albus HOM05D003913 ORTHO05D004803 3.1e-51 206.8 401 42.1
arahy.Tifrunner.gnm1.ann1.0Z7T57 Arachis hypogaea HOM05D003913 ORTHO05D004803 3.4e-50 203.4 408 38.7
CARHR290910 Cardamine hirsuta HOM05D003913 ORTHO05D004803 2.2e-49 200.7 401 57.1
arahy.Tifrunner.gnm1.ann1.F1WV5B Arachis hypogaea HOM05D003913 ORTHO05D004803 2.9e-49 200.3 408 38.2
Dinv13071 Davidia involucrata HOM05D003913 ORTHO05D004803 2.9e-49 200.3 399 45.1
PGR031G2719 Punica granatum HOM05D003913 ORTHO05D004803 1.9e-48 197.6 403 65.0
Manes.02G188000 Manihot esculenta HOM05D003913 ORTHO05D004803 1.2e-47 194.9 411 64.0
Nitab4.5_0002890g0020 Nicotiana tabacum HOM05D003913 ORTHO05D004803 4.6e-47 193.0 341 47.5
Sed0012824 Sechium edule HOM05D003913 ORTHO05D004803 6.1e-47 192.6 412 58.0
ClCG08G002560 Citrullus lanatus HOM05D003913 ORTHO05D004803 7.9e-47 192.2 409 64.8
VMungo1080G1176 Vigna mungo HOM05D003913 ORTHO05D004803 8.8e-46 188.7 400 49.8
MELO3C024997.2 Cucumis melo HOM05D003913 ORTHO05D004803 1.1e-45 188.3 401 65.3
Potri.019G087200 Populus trichocarpa HOM05D003913 ORTHO05D004803 1.1e-45 188.3 406 62.6
Dinv44716 Davidia involucrata HOM05D003913 ORTHO05D004803 2.6e-45 187.2 398 46.2
MD07G1041000 Malus domestica HOM05D003913 ORTHO05D004803 2.6e-45 187.2 400 64.5
CsaV3_6G002750 Cucumis sativus L. HOM05D003913 ORTHO05D004803 3.3e-45 186.8 401 64.8
BolC6t38638H Brassica oleracea HOM05D003913 ORTHO05D004803 7.4e-45 185.7 411 45.0
Aqoxy1G00206 Aquilegia oxysepala HOM05D003913 ORTHO05D004803 1.7e-44 184.5 398 62.1
LjContig00222g0022410 Lotus japonicus HOM05D003913 ORTHO05D004803 2.8e-44 183.7 411 36.7
Glyma.20G173100 Glycine max HOM05D003913 ORTHO05D004803 3.7e-44 183.3 394 46.7
MD02G1272000 Malus domestica HOM05D003913 ORTHO05D004803 8.2e-44 182.2 400 64.2
Actinidia29569 Actinidia chinensis HOM05D003913 ORTHO05D004803 1.1e-43 181.8 403 62.8
Phvul.011G104600 Phaseolus vulgaris HOM05D003913 ORTHO05D004803 1.8e-43 181.0 400 52.8
Sed0004416 Sechium edule HOM05D003913 ORTHO05D004803 4.1e-43 179.9 412 63.6
BraA07t30691Z Brassica rapa HOM05D003913 ORTHO05D004803 5.3e-43 179.5 411 51.3
Nitab4.5_0000366g0190 Nicotiana tabacum HOM05D003913 ORTHO05D004803 1.2e-42 178.3 392 67.6
AagrBONN_evm.TU.Sc2ySwM_368.376 Anthoceros agrestis HOM05D003913 ORTHO05D004803 2.0e-42 177.6 411 57.7
C06p35320 Brassica napus HOM05D003913 ORTHO05D004803 2.0e-42 177.6 425 46.8
BcaB03g15621 Brassica carinata HOM05D003913 ORTHO05D004803 3.4e-42 176.8 401 54.6
A07p37990 Brassica napus HOM05D003913 ORTHO05D004803 4.5e-42 176.4 410 51.7
A07p30560 Brassica napus HOM05D003913 ORTHO05D004803 1.0e-41 175.3 425 38.8
RcHm_v2.0_Chr7g0210071 Rosa chinensis HOM05D003913 ORTHO05D004803 1.3e-41 174.9 411 63.0
Gorai.006G187200 Gossypium raimondii HOM05D003913 ORTHO05D004803 2.2e-41 174.1 405 37.5
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 2.2e-41 174.1 387 35.4
FvH4_5g22350 Fragaria vesca HOM05D003913 ORTHO05D004803 5.0e-41 172.9 411 62.0
FAN18G2025 Fragaria x ananassa HOM05D003913 ORTHO05D004803 5.0e-41 172.9 411 62.0
FAN18G2798 Fragaria x ananassa HOM05D003913 ORTHO05D004803 5.0e-41 172.9 411 62.0
CiPaw.15G007000 Carya illinoinensis HOM05D003913 ORTHO05D004803 6.5e-41 172.6 400 59.8
Prupe.8G049100 Prunus persica HOM05D003913 ORTHO05D004803 6.5e-41 172.6 401 62.6
Potri.013G116900 Populus trichocarpa HOM05D003913 ORTHO05D004803 1.9e-40 171.0 415 54.5
BcaC08g46615 Brassica carinata HOM05D003913 ORTHO05D004803 2.5e-40 170.6 405 53.3
Gohir.D09G165400 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.5e-40 170.6 405 37.0
AL2G31420 Arabidopsis lyrata HOM05D003913 ORTHO05D004803 3.2e-40 170.2 401 54.6
FAN08G0696 Fragaria x ananassa HOM05D003913 ORTHO05D004803 3.2e-40 170.2 411 61.8
Ciclev10008663m.g Citrus clementina HOM05D003913 ORTHO05D004803 7.2e-40 169.1 401 61.6
TWI12G0147 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 9.4e-40 168.7 398 62.6
PGSC0003DMG400028735 Solanum tuberosum HOM05D003913 ORTHO05D004803 1.6e-39 167.9 411 60.3
Aa31LG4G8790 Aethionema arabicum HOM05D003913 ORTHO05D004803 2.7e-39 167.2 401 54.6
BolC6t39643H Brassica oleracea HOM05D003913 ORTHO05D004803 7.9e-39 165.6 405 52.8
Os03g0685600 Oryza sativa ssp. japonica HOM05D003913 ORTHO05D004803 1.4e-38 164.9 407 51.4
Sopen07g004790 Solanum pennellii HOM05D003913 ORTHO05D004803 1.4e-38 164.9 411 60.3
C06p45910 Brassica napus HOM05D003913 ORTHO05D004803 1.8e-38 164.5 398 53.8
Solyc07g008860.3 Solanum lycopersicum HOM05D003913 ORTHO05D004803 1.8e-38 164.5 411 60.3
Sabra13G0099000 Salix brachista HOM05D003913 ORTHO05D004803 2.3e-38 164.1 401 60.6
Atru.chr13.1880 Acer truncatum HOM05D003913 ORTHO05D004803 3.9e-38 163.3 398 60.3
AT1G71840 Arabidopsis thaliana HOM05D003913 ORTHO05D004803 8.8e-38 162.2 401 54.1
BraA07t31364Z Brassica rapa HOM05D003913 ORTHO05D004803 1.5e-37 161.4 400 53.2
SEGI_39165 Sequoiadendron giganteum HOM05D003913 ORTHO05D004803 1.5e-37 161.4 401 55.4
Oeu053831.1 Olea europaea HOM05D003913 ORTHO05D004803 2.0e-37 161.0 412 52.9
Gohir.A06G109200 Gossypium hirsutum HOM05D003913 ORTHO05D004803 2.6e-37 160.6 382 38.0
Thhalv10018505m.g Eutrema salsugineum HOM05D003913 ORTHO05D004803 9.7e-37 158.7 400 53.2
FAN04G3257 Fragaria x ananassa HOM05D003913 ORTHO05D004803 9.7e-37 158.7 445 52.1
BcaC08g45753 Brassica carinata HOM05D003913 ORTHO05D004803 2.2e-36 157.5 401 52.9
Zm00001eb362180 Zea mays HOM05D003913 ORTHO05D004803 2.8e-36 157.1 411 45.0
ECA236G4407 Erigeron canadensis HOM05D003913 ORTHO05D004803 3.7e-36 156.8 395 35.7
Lj2C196T3 Lonicera japonica HOM05D003913 ORTHO05D004803 3.7e-36 156.8 406 38.7
PSO541G3150 Papaver somniferum HOM05D003913 ORTHO05D004803 3.7e-36 156.8 376 66.5
SalBow7G2889 Salvia bowleyana HOM05D003913 ORTHO05D004803 6.3e-36 156.0 417 49.4
Thecc.08G198300 Theobroma cacao HOM05D003913 ORTHO05D004803 6.3e-36 156.0 405 36.3
Sp5g26870 Schrenkiella parvula HOM05D003913 ORTHO05D004803 1.1e-35 155.2 401 52.9
SpUn0020_0100 Schrenkiella parvula HOM05D003913 ORTHO05D004803 1.1e-35 155.2 401 52.9
arahy.Tifrunner.gnm1.ann1.A7TGXU Arachis hypogaea HOM05D003913 ORTHO05D004803 3.1e-35 153.7 428 33.9
TWI75G1061 Tripterygium wilfordii HOM05D003913 ORTHO05D004803 3.1e-35 153.7 403 59.3
MSTRG.9615 Avicennia marina HOM05D003913 ORTHO05D004803 7.0e-35 152.5 340 62.4
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.6e-34 151.4 379 29.3
GSVIVG01015205001 Vitis vinifera HOM05D003913 ORTHO05D004803 3.5e-34 150.2 400 44.5
Lj4A109T49 Lonicera japonica HOM05D003913 ORTHO05D004803 4.5e-34 149.8 398 59.0
Gorai.010G129100 Gossypium raimondii HOM05D003913 ORTHO05D004803 7.7e-34 149.1 406 36.9
Gohir.D06G113300 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.0e-33 148.7 406 36.9
Zm00001eb139680 Zea mays HOM05D003913 ORTHO05D004803 1.0e-33 148.7 407 54.5
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 1.3e-33 148.3 399 28.1
CANSAT25G1043 Cannabis sativa HOM05D003913 ORTHO05D004803 1.7e-33 147.9 401 60.1
CDE08G0059 Ceratophyllum demersum HOM05D003913 ORTHO05D004803 1.7e-33 147.9 400 51.8
Nn3g16733 Nelumbo nucifera HOM05D003913 ORTHO05D004803 2.2e-33 147.5 398 58.8
Cc11_g02860 Coffea canephora HOM05D003913 ORTHO05D004803 2.9e-33 147.1 399 56.6
RcHm_v2.0_Chr6g0272901 Rosa chinensis HOM05D003913 ORTHO05D004803 2.9e-33 147.1 411 59.4
ECA232G2276 Erigeron canadensis HOM05D003913 ORTHO05D004803 6.5e-33 146.0 397 59.7
TAR625G1217 Trochodendron aralioides HOM05D003913 ORTHO05D004803 6.5e-33 146.0 398 59.3
SGA_v2.0_scaffold114G31919 Striga asiatica HOM05D003913 ORTHO05D004803 1.5e-32 144.8 337 62.0
Lsat_1_v5_gn_9_43060 Lactuca sativa HOM05D003913 ORTHO05D004803 2.5e-32 144.1 397 59.9
Cre12.g487200 Chlamydomonas reinhardtii HOM05D003913 ORTHO05D004803 1.2e-31 141.7 347 33.1
CSS0047372 Camellia sinensis var. sinensis HOM05D003913 ORTHO05D004803 2.7e-31 140.6 408 57.4
Ah.03g146560 Amaranthus hybridus HOM05D003913 ORTHO05D004803 3.6e-31 140.2 399 59.9
COL.COLO4_13734 Corchorus olitorius HOM05D003913 ORTHO05D004803 3.6e-31 140.2 330 42.7
MBI10_g42737_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 4.7e-31 139.8 338 68.6
THA.LOC104826775 Tarenaya hassleriana HOM05D003913 ORTHO05D004803 8.0e-31 139.0 405 49.4
Gohir.A09G169700 Gossypium hirsutum HOM05D003913 ORTHO05D004803 1.4e-30 138.3 405 34.1
Aa31LG7G6630 Aethionema arabicum HOM05D003913 ORTHO05D004803 1.8e-30 137.9 354 28.2
ATR0001G003 Amborella trichopoda HOM05D003913 ORTHO05D004803 3.0e-30 137.1 338 38.2
GSVIVG01001592001 Vitis vinifera HOM05D003913 ORTHO05D004803 4.0e-30 136.7 398 56.8
Rhsim04G0038100 Rhododendron simsii HOM05D003913 ORTHO05D004803 6.7e-30 136.0 406 58.4
Carub.0002s1860 Capsella rubella HOM05D003913 ORTHO05D004803 8.8e-30 135.6 129 52.7
HPP92_008098 Vanilla planifolia HOM05D003913 ORTHO05D004803 8.8e-30 135.6 402 55.2
Ca_30575_v3 Cicer arietinum L. HOM05D003913 ORTHO05D004803 2.0e-29 134.4 392 26.5
Cfa018220 Carpinus fangiana HOM05D003913 ORTHO05D004803 2.6e-29 134.0 337 66.5
FvH4_2g12470 Fragaria vesca HOM05D003913 ORTHO05D004803 3.3e-29 133.7 402 58.5
VMungo0720G0336 Vigna mungo HOM05D003913 ORTHO05D004803 9.7e-29 132.1 414 45.2
FAN24G0738 Fragaria x ananassa HOM05D003913 ORTHO05D004803 8.2e-28 129.0 402 58.0
Glyma.09G057500 Glycine max HOM05D003913 ORTHO05D004803 8.2e-28 129.0 156 44.9
DCAR_000644 Daucus carota HOM05D003913 ORTHO05D004803 7.0e-27 125.9 399 32.6
PSO675G8150 Papaver somniferum HOM05D003913 ORTHO05D004803 7.0e-27 125.9 403 59.8
SMO347G0114 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 1.2e-26 125.2 405 33.1
Migut.I00088 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.0e-26 124.4 427 35.8
Peaxi162Scf01838g00003 Petunia axillaris HOM05D000173 ORTHO05D000316 2.0e-26 124.4 302 30.8
Nitab4.5_0002890g0010 Nicotiana tabacum HOM05D003913 ORTHO05D004803 3.5e-26 123.6 323 35.9
Hund19608 Selenicereus undatus HOM05D003913 ORTHO05D004803 1.0e-25 122.1 441 49.7
Sc16g0003970 Simmondsia chinensis HOM05D003913 ORTHO05D004803 1.0e-25 122.1 334 65.0
HanXRQChr11g0320411 Helianthus annuus HOM05D003913 ORTHO05D004803 3.8e-25 120.2 397 55.7
SMO367G0065 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 3.8e-25 120.2 352 27.8
Duzib211G0424 Durio zibethinus HOM05D003913 ORTHO05D004803 5.0e-25 119.8 349 38.4
Sabra19G0097800 Salix brachista HOM05D003913 ORTHO05D004803 1.1e-24 118.6 417 55.6
Actinidia33168 Actinidia chinensis HOM05D003898 ORTHO05D004642 3.2e-24 117.1 292 35.6
CBR_g49506 Chara braunii HOM05D003913 ORTHO05D004803 4.2e-24 116.7 414 56.3
Sabra19G0101300 Salix brachista HOM05D003913 ORTHO05D004803 2.7e-23 114.0 417 53.7
AUR62017935 Chenopodium quinoa HOM05D003913 ORTHO05D004803 3.6e-23 113.6 409 50.6
Hma1.2p1_0276F.1_g111300 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 1.4e-22 111.7 333 59.2
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 1.4e-22 111.7 279 29.0
EL10Ac6g15251 Beta vulgaris HOM05D003913 ORTHO05D004803 1.8e-22 111.3 413 55.4
AUR62024845 Chenopodium quinoa HOM05D003913 ORTHO05D004803 1.8e-22 111.3 351 25.6
MCO10G384 Micromonas commoda HOM05D003913 ORTHO05D004803 1.8e-22 111.3 353 45.9
AUR62001664 Chenopodium quinoa HOM05D003913 ORTHO05D004803 4.0e-22 110.2 340 24.1
DCAR_004603 Daucus carota HOM05D000366 ORTHO05D000437 4.0e-22 110.2 129 45.0
Eucgr.E02330 Eucalyptus grandis HOM05D003913 ORTHO05D004803 5.2e-22 109.8 128 44.5
Cpa.g.sc2399.1 Carica papaya HOM05D003913 ORTHO05D004803 6.8e-22 109.4 125 43.2
TPR.G30584 Trifolium pratense HOM05D003913 ORTHO05D004803 6.8e-22 109.4 413 24.5
Oeu053830.1 Olea europaea HOM05D003913 ORTHO05D004803 3.4e-21 107.1 445 44.7
SMO343G0013 Selaginella moellendorffii HOM05D003913 ORTHO05D004803 4.4e-21 106.7 375 25.6
Rhsim06G0087400 Rhododendron simsii HOM05D003913 ORTHO05D004803 5.7e-21 106.3 335 63.0
CARHR124080 Cardamine hirsuta HOM05D003913 ORTHO05D004803 9.8e-21 105.5 342 26.3
MBI10_g41322_MAGBIO Magnolia biondii HOM05D003913 ORTHO05D004803 9.8e-21 105.5 128 44.5
unitig_747.g21315 Utricularia gibba HOM05D003913 ORTHO05D004803 2.2e-20 104.4 415 23.4
COL.COLO4_03395 Corchorus olitorius HOM05D003913 ORTHO05D004803 3.7e-20 103.6 129 41.1
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 6.3e-20 102.8 123 43.9
TAR381G0993 Trochodendron aralioides HOM05D003913 ORTHO05D004803 1.1e-19 102.1 130 43.8
Migut.J01123 Erythranthe guttata HOM05D003913 ORTHO05D004803 1.4e-19 101.7 415 25.5
FAN20G2057 Fragaria x ananassa HOM05D003913 ORTHO05D004803 2.4e-19 100.9 341 40.2
EL10Ac9g21859 Beta vulgaris HOM05D003913 ORTHO05D004803 7.0e-19 99.4 324 23.8
AUR62003626 Chenopodium quinoa HOM05D003913 ORTHO05D004803 2.0e-18 97.8 140 38.6
Migut.D01748 Erythranthe guttata HOM05D003913 ORTHO05D004803 2.7e-18 97.4 338 57.1
Glyma.10G218600 Glycine max HOM05D003913 ORTHO05D004803 3.5e-18 97.1 136 37.5
CANSAT11G1897 Cannabis sativa HOM05D003913 ORTHO05D004803 2.1e-15 87.8 121 39.7
Haze_17883 Corylus avellana HOM05D003913 ORTHO05D004803 3.6e-15 87.0 500 47.0
Glyma.10G218500 Glycine max HOM05D003913 ORTHO05D004803 3.6e-15 87.0 119 39.5
Hma1.2p1_0276F.1_g111310 Hydrangea macrophylla HOM05D003913 ORTHO05D004803 6.8e-14 82.8 78 50.0
vmacro21210 Vaccinium macrocarpon HOM05D003913 ORTHO05D004803 1.2e-13 82.0 401 50.4
PSO455G0073 Papaver somniferum HOM05D003913 ORTHO05D004803 6.3e-12 76.3 64 56.2
SHI13909 Sapria himalayana HOM05D003913 ORTHO05D004803 4.1e-11 73.6 121 30.6
Thecc.09G236800 Theobroma cacao HOM05D003913 ORTHO05D004803 1.2e-10 72.0 206 27.2
Medtr7g079470 Medicago truncatula HOM05D003913 ORTHO05D004803 3.5e-10 70.5 65 49.2
Lj4C56G20 Lonicera japonica HOM05D003913 ORTHO05D004803 5.9e-10 69.7 209 26.3
Psat6g021120 Pisum sativum HOM05D003913 ORTHO05D004803 5.9e-10 69.7 120 34.2
BolC6t38649H Brassica oleracea HOM05D003913 ORTHO05D004803 8.6e-09 65.9 147 31.3
Medtr7g111550 Medicago truncatula HOM05D003913 ORTHO05D004803 4.7e-07 60.1 112 35.7
A02p17440 Brassica napus HOM05D003913 ORTHO05D004803 6.1e-07 59.7 45 53.3
BraA02t06789Z Brassica rapa HOM05D003913 ORTHO05D004803 3.0e-06 57.4 45 51.1


User provided reference genes

Program Settings