Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 7.5e-242 840.1 428 100.0
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 3.8e-100 369.4 262 68.7
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 7.8e-98 361.7 261 67.0
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 2.1e-90 337.0 261 64.4
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 7.8e-90 335.1 266 64.7
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 8.7e-89 331.6 261 62.1
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 5.6e-88 328.9 261 61.7
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 5.6e-88 328.9 261 61.7
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 9.6e-88 328.2 261 61.7
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 9.6e-88 328.2 261 63.2
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 1.6e-87 327.4 291 56.4
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 1.6e-87 327.4 261 61.7
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 1.6e-87 327.4 261 61.7
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 4.8e-87 325.9 260 61.9
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 6.2e-87 325.5 260 60.4
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 8.1e-87 325.1 260 61.9
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 1.1e-86 324.7 261 62.1
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 2.4e-86 323.6 271 60.5
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 3.1e-86 323.2 261 60.5
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 3.1e-86 323.2 267 59.2
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 3.1e-86 323.2 261 61.3
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 4.0e-86 322.8 261 61.7
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 4.0e-86 322.8 262 61.8
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 4.0e-86 322.8 261 62.5
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 5.3e-86 322.4 261 60.5
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 6.9e-86 322.0 261 61.7
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 9.0e-86 321.6 261 59.4
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 1.2e-85 321.2 261 61.3
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 1.5e-85 320.9 261 61.3
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 2.0e-85 320.5 261 62.1
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 2.0e-85 320.5 261 62.1
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 2.0e-85 320.5 261 60.5
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 2.6e-85 320.1 260 61.5
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.4e-85 319.7 288 58.0
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 4.5e-85 319.3 298 54.4
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 4.5e-85 319.3 261 61.3
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 7.6e-85 318.5 261 60.5
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 7.6e-85 318.5 261 61.3
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 7.6e-85 318.5 262 62.2
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 7.6e-85 318.5 262 60.3
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 7.6e-85 318.5 261 62.1
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 9.9e-85 318.2 261 61.3
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 9.9e-85 318.2 261 60.2
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 9.9e-85 318.2 262 61.8
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 9.9e-85 318.2 261 60.9
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 9.9e-85 318.2 261 60.5
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 1.3e-84 317.8 261 62.8
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 1.3e-84 317.8 261 59.8
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 2.9e-84 316.6 261 60.5
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 2.9e-84 316.6 301 55.1
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 3.8e-84 316.2 261 60.9
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 3.8e-84 316.2 261 60.2
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 3.8e-84 316.2 261 59.8
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 6.4e-84 315.5 261 60.5
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 8.4e-84 315.1 262 61.5
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 1.1e-83 314.7 262 61.5
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 1.1e-83 314.7 262 61.5
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 1.4e-83 314.3 261 58.2
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 1.4e-83 314.3 261 58.6
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 1.9e-83 313.9 261 59.4
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 1.9e-83 313.9 261 59.0
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 2.4e-83 313.5 262 61.5
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.4e-83 313.5 290 55.2
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 2.4e-83 313.5 261 58.2
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 3.2e-83 313.2 303 55.4
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 4.2e-83 312.8 262 61.1
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 5.4e-83 312.4 274 59.5
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 5.4e-83 312.4 313 53.7
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 5.4e-83 312.4 261 59.8
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 5.4e-83 312.4 288 57.3
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 7.1e-83 312.0 290 56.6
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 9.3e-83 311.6 260 61.5
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.2e-82 311.2 248 63.3
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 1.6e-82 310.8 262 61.1
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.6e-82 310.8 274 59.1
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 1.6e-82 310.8 310 55.5
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 2.1e-82 310.5 305 54.1
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 2.7e-82 310.1 260 61.2
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 2.7e-82 310.1 268 61.2
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 2.7e-82 310.1 262 60.7
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 3.5e-82 309.7 262 61.1
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 4.6e-82 309.3 262 58.0
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 6.0e-82 308.9 262 62.2
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 6.0e-82 308.9 262 62.2
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 1.8e-81 307.4 260 60.0
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 3.9e-81 306.2 330 50.9
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 5.1e-81 305.8 260 60.4
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 1.1e-80 304.7 326 52.5
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 1.5e-80 304.3 260 60.0
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 3.3e-80 303.1 261 57.9
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 7.4e-80 302.0 260 60.0
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 1.3e-79 301.2 317 51.1
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 1.6e-79 300.8 250 60.4
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 1.6e-79 300.8 322 52.2
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 1.6e-79 300.8 273 54.9
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.7e-79 299.7 257 60.3
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 6.2e-79 298.9 261 57.5
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 1.4e-78 297.7 322 51.9
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 3.1e-78 296.6 251 59.0
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 4.0e-78 296.2 227 63.4
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 5.3e-78 295.8 249 61.0
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 6.9e-78 295.4 297 51.9
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 1.2e-77 294.7 252 61.5
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 2.6e-77 293.5 222 64.9
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 1.1e-75 288.1 340 48.2
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 2.5e-75 287.0 293 53.6
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 3.5e-74 283.1 262 58.4
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 7.9e-74 282.0 230 60.9
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 5.1e-73 279.3 253 55.3
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 2.1e-71 273.9 261 55.2
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 8.2e-71 271.9 269 52.0
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 1.4e-67 261.2 264 51.1
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 1.8e-65 254.2 220 59.1
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 5.1e-65 252.7 189 64.0
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 8.7e-65 251.9 203 63.1
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 9.7e-64 248.4 261 50.6
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 1.8e-62 244.2 262 48.5
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 2.1e-58 230.7 261 47.5
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 4.5e-53 213.0 158 67.7
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 1.0e-52 211.8 154 69.5
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 3.6e-50 203.4 200 56.5
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 7.9e-50 202.2 161 64.6
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 2.3e-49 200.7 167 59.9
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.3e-49 200.7 161 61.5
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 4.4e-48 196.4 264 42.0
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 1.9e-35 154.5 194 44.8
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.7e-26 124.0 109 56.9
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 3.6e-26 123.6 118 56.8
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 8.8e-25 119.0 157 49.0
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 2.0e-24 117.9 103 58.3
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 5.4e-22 109.8 137 46.0
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 1.6e-18 98.2 83 59.0
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 2.1e-18 97.8 76 61.8
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 6.8e-17 92.8 72 59.7
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 1.1e-14 85.5 72 55.6
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 4.7e-10 70.1 55 56.4
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 1.4e-09 68.6 86 45.3
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 2.3e-09 67.8 88 42.0


User provided reference genes

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