Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 5.7e-141 504.2 250 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.6e-66 256.9 182 65.4
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 4.3e-64 248.8 222 55.4
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 9.3e-59 231.1 249 45.0
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.7e-58 229.6 192 53.1
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 6.0e-58 228.4 190 56.8
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 7.9e-58 228.0 227 47.6
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 7.9e-58 228.0 227 47.6
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 7.9e-58 228.0 193 52.8
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.3e-57 227.3 193 53.9
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 1.8e-57 226.9 204 52.5
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 1.8e-57 226.9 193 53.4
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 2.3e-57 226.5 192 52.1
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 2.3e-57 226.5 249 46.6
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 3.0e-57 226.1 193 51.3
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 3.0e-57 226.1 249 47.0
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 3.9e-57 225.7 250 46.0
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 5.1e-57 225.3 242 45.9
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 5.1e-57 225.3 193 53.4
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 5.1e-57 225.3 193 52.8
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 8.7e-57 224.6 216 50.0
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 1.1e-56 224.2 192 52.6
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 1.5e-56 223.8 191 51.3
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 1.5e-56 223.8 242 45.5
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 1.5e-56 223.8 191 51.3
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 1.5e-56 223.8 193 52.8
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.9e-56 223.4 191 51.8
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 2.5e-56 223.0 192 53.6
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 2.5e-56 223.0 191 53.9
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 3.3e-56 222.6 192 51.0
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 3.3e-56 222.6 184 53.3
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 4.3e-56 222.2 193 53.4
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 4.3e-56 222.2 195 53.3
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 5.7e-56 221.9 250 44.0
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 5.7e-56 221.9 256 44.5
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 7.4e-56 221.5 193 52.8
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 7.4e-56 221.5 192 53.6
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 7.4e-56 221.5 193 51.8
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 7.4e-56 221.5 194 51.5
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 7.4e-56 221.5 191 51.3
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 9.6e-56 221.1 191 50.8
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 9.6e-56 221.1 191 50.8
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 9.6e-56 221.1 255 45.1
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 9.6e-56 221.1 191 52.9
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 9.6e-56 221.1 193 51.3
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 9.6e-56 221.1 194 52.1
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 9.6e-56 221.1 194 52.1
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 1.3e-55 220.7 193 52.8
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 1.3e-55 220.7 193 52.3
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 1.6e-55 220.3 191 52.9
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 1.6e-55 220.3 184 51.6
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 2.1e-55 219.9 191 50.3
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 2.1e-55 219.9 256 44.1
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 2.8e-55 219.5 192 52.6
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 2.8e-55 219.5 193 51.3
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 2.8e-55 219.5 193 50.8
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 2.8e-55 219.5 184 53.8
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 3.7e-55 219.2 191 50.8
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 3.7e-55 219.2 191 50.8
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 3.7e-55 219.2 193 52.3
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 4.8e-55 218.8 191 51.3
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 4.8e-55 218.8 193 50.8
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 4.8e-55 218.8 193 51.8
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 6.3e-55 218.4 193 50.8
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 6.3e-55 218.4 192 52.1
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 6.3e-55 218.4 204 52.0
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 6.3e-55 218.4 193 53.9
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 8.2e-55 218.0 192 52.1
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 1.4e-54 217.2 204 51.5
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 1.8e-54 216.9 193 50.3
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 3.1e-54 216.1 193 51.3
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 3.1e-54 216.1 192 52.6
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 3.1e-54 216.1 220 47.7
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 5.3e-54 215.3 193 49.7
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 6.9e-54 214.9 183 53.0
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 6.9e-54 214.9 193 50.3
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.2e-53 214.2 193 50.3
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 1.2e-53 214.2 193 50.3
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.5e-53 213.8 182 52.7
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 1.5e-53 213.8 247 42.1
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.5e-53 213.8 247 42.1
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.5e-53 213.8 193 51.3
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 2.0e-53 213.4 220 46.8
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 3.4e-53 212.6 193 49.7
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.4e-53 212.6 193 50.3
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 3.4e-53 212.6 170 55.9
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 3.4e-53 212.6 249 43.8
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 4.5e-53 212.2 199 52.3
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 4.5e-53 212.2 193 50.3
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 4.5e-53 212.2 202 50.0
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 5.9e-53 211.8 183 53.6
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 7.6e-53 211.5 193 50.3
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.0e-52 211.1 194 50.0
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 1.3e-52 210.7 193 48.7
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 1.3e-52 210.7 193 49.7
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 2.2e-52 209.9 183 50.3
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 2.2e-52 209.9 187 51.9
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 3.8e-52 209.1 193 48.7
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 8.5e-52 208.0 202 46.0
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 8.5e-52 208.0 202 46.0
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 8.5e-52 208.0 202 46.0
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.4e-51 207.2 183 49.2
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 5.5e-51 205.3 184 50.0
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 1.3e-49 200.7 192 46.9
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 2.3e-49 199.9 193 45.6
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 4.8e-47 192.2 207 45.4
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.9e-45 185.3 249 37.3
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 6.5e-44 181.8 163 50.3
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 7.2e-43 178.3 289 34.9
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 2.1e-42 176.8 193 45.6
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 3.6e-42 176.0 160 49.4
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 7.9e-42 174.9 146 54.8
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 3.0e-41 172.9 194 44.8
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 3.1e-38 162.9 135 52.6
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 4.5e-37 159.1 166 47.0
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 4.2e-35 152.5 262 34.4
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 2.0e-32 143.7 184 39.7
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.0e-32 143.7 240 35.0
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 7.4e-32 141.7 102 61.8
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 6.3e-31 138.7 154 42.9
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 1.1e-30 137.9 118 51.7
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 3.1e-30 136.3 220 35.9
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 9.1e-30 134.8 187 39.6
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 2.0e-29 133.7 101 59.4
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 6.5e-28 128.6 169 39.1
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 2.5e-27 126.7 98 56.1
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 5.5e-27 125.6 98 56.1
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 4.7e-26 122.5 98 56.1
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 6.1e-26 122.1 94 58.5
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 2.9e-20 103.2 84 54.8
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 1.9e-19 100.5 104 46.2
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 2.5e-19 100.1 173 30.6
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 3.6e-18 96.3 160 32.5
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 5.7e-16 89.0 92 41.3
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 1.3e-15 87.8 84 46.4
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 2.8e-15 86.7 71 53.5
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 2.8e-15 86.7 107 41.1
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 2.8e-15 86.7 107 41.1
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 3.7e-15 86.3 95 42.1
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.1e-14 84.7 72 52.8
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 1.1e-14 84.7 68 55.9
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 1.1e-14 84.7 72 52.8
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 5.9e-13 79.0 99 43.4
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 5.5e-11 72.4 161 28.6
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 5.5e-11 72.4 73 46.6
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 1.2e-08 64.7 49 57.1
Cfa026726 Carpinus fangiana HOM05D004920 ORTHO05D123200 1.8e-06 57.4 162 27.2
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 2.4e-06 57.0 44 54.5
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 2.4e-06 57.0 44 54.5


User provided reference genes

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