Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 7.0e-119 430.6 218 100.0
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 1.4e-50 203.8 152 68.4
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 4.0e-50 202.2 146 71.2
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 4.5e-49 198.7 142 69.0
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 1.3e-48 197.2 147 68.7
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 2.2e-48 196.4 136 72.8
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 2.9e-48 196.1 157 65.6
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 2.9e-48 196.1 135 73.3
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 6.5e-48 194.9 130 72.3
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 8.4e-48 194.5 186 58.1
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 1.1e-47 194.1 144 68.8
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 1.9e-47 193.4 142 67.6
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 2.5e-47 193.0 155 65.2
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 2.5e-47 193.0 141 67.4
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 3.2e-47 192.6 142 71.1
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 4.2e-47 192.2 152 66.4
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 4.2e-47 192.2 152 66.4
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 5.5e-47 191.8 153 64.1
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 7.1e-47 191.4 143 67.1
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 7.1e-47 191.4 146 67.8
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 9.3e-47 191.0 146 66.4
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 9.3e-47 191.0 146 66.4
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 9.3e-47 191.0 152 65.8
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 9.3e-47 191.0 152 65.8
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 1.2e-46 190.7 158 62.7
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 1.6e-46 190.3 148 65.5
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 1.6e-46 190.3 155 63.2
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 1.6e-46 190.3 192 56.8
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 2.1e-46 189.9 178 58.4
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 2.7e-46 189.5 158 65.2
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 2.7e-46 189.5 146 67.1
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 3.5e-46 189.1 142 67.6
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 3.5e-46 189.1 144 68.1
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 4.6e-46 188.7 156 63.5
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 4.6e-46 188.7 156 63.5
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 4.6e-46 188.7 153 64.1
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 4.6e-46 188.7 158 63.3
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 4.6e-46 188.7 148 63.5
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 4.6e-46 188.7 146 67.1
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 4.6e-46 188.7 156 63.5
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 6.0e-46 188.3 155 65.2
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 6.0e-46 188.3 127 74.8
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 7.9e-46 188.0 185 55.7
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 7.9e-46 188.0 144 67.4
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 7.9e-46 188.0 153 64.1
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 7.9e-46 188.0 152 65.1
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 7.9e-46 188.0 172 59.9
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 1.0e-45 187.6 158 62.7
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 1.0e-45 187.6 129 71.3
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 1.3e-45 187.2 173 59.0
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 1.3e-45 187.2 140 67.9
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 1.3e-45 187.2 144 66.7
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 1.3e-45 187.2 156 64.1
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 1.3e-45 187.2 132 72.0
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 1.3e-45 187.2 148 64.9
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 1.8e-45 186.8 138 71.0
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 1.8e-45 186.8 152 61.8
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 1.8e-45 186.8 141 66.0
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 2.3e-45 186.4 162 62.3
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 3.0e-45 186.0 154 63.0
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 3.0e-45 186.0 180 56.7
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 3.0e-45 186.0 155 61.3
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 3.0e-45 186.0 128 73.4
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 3.0e-45 186.0 128 75.0
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 3.9e-45 185.7 131 69.5
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 3.9e-45 185.7 156 64.1
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 3.9e-45 185.7 133 70.7
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 3.9e-45 185.7 156 64.1
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 5.1e-45 185.3 148 66.2
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 5.1e-45 185.3 149 65.1
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 5.1e-45 185.3 133 69.9
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 6.7e-45 184.9 127 72.4
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 6.7e-45 184.9 141 66.0
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 8.7e-45 184.5 126 72.2
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 8.7e-45 184.5 151 64.9
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 8.7e-45 184.5 151 64.9
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 8.7e-45 184.5 131 70.2
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 8.7e-45 184.5 149 65.1
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 8.7e-45 184.5 149 65.1
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 8.7e-45 184.5 171 56.7
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 1.1e-44 184.1 163 58.3
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 1.1e-44 184.1 156 62.8
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 1.1e-44 184.1 141 66.0
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 1.5e-44 183.7 156 62.8
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.5e-44 183.7 135 68.1
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.5e-44 183.7 149 65.8
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 1.5e-44 183.7 149 65.8
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.9e-44 183.3 149 65.8
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 2.5e-44 183.0 151 64.2
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 2.5e-44 183.0 138 68.8
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 3.3e-44 182.6 156 62.2
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 3.3e-44 182.6 141 65.2
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 4.3e-44 182.2 149 64.4
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 4.3e-44 182.2 130 70.0
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 5.7e-44 181.8 148 62.8
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 5.7e-44 181.8 131 71.8
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 5.7e-44 181.8 138 68.1
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 5.7e-44 181.8 187 56.1
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 7.4e-44 181.4 131 68.7
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 9.6e-44 181.0 146 65.1
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 1.3e-43 180.6 132 68.2
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 4.8e-43 178.7 130 69.2
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 6.3e-43 178.3 147 63.9
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 8.2e-43 177.9 155 60.0
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 1.4e-42 177.2 154 61.0
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 1.8e-42 176.8 144 66.7
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 1.8e-42 176.8 144 66.7
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 4.1e-42 175.6 143 63.6
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 5.3e-42 175.3 181 54.7
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 7.2e-39 164.9 116 70.7
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 1.3e-37 160.6 155 58.7
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 2.3e-37 159.8 135 59.3
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 3.3e-36 156.0 133 63.9
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 7.4e-36 154.8 116 67.2
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 1.6e-35 153.7 145 55.9
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 2.8e-35 152.9 118 66.1
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 6.5e-32 141.7 107 67.3
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 9.1e-26 121.3 150 47.3
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 1.2e-25 120.9 85 71.8
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 3.4e-25 119.4 85 70.6
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 4.5e-25 119.0 85 70.6
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 5.9e-25 118.6 110 60.0
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 5.2e-21 105.5 90 62.2
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 1.1e-20 104.4 86 61.6
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 9.7e-20 101.3 100 56.0
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 5.3e-18 95.5 78 62.8
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 7.0e-18 95.1 94 58.5
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 1.2e-14 84.3 59 64.4
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 1.6e-09 67.4 111 36.9
Pp3c1_15090 Physcomitrium patens HOM05D000723 ORTHO05D001760 1.5e-07 60.8 51 60.8
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 3.2e-07 59.7 122 36.1
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 1.2e-06 57.8 112 35.7
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 2.1e-06 57.0 100 39.0
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 2.1e-06 57.0 100 39.0
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 2.1e-06 57.0 100 39.0
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 2.1e-06 57.0 100 39.0
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 6.1e-06 55.5 109 35.8
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 6.1e-06 55.5 109 35.8
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 6.1e-06 55.5 124 31.5
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 8.0e-06 55.1 129 31.8
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 8.0e-06 55.1 123 35.0


User provided reference genes

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