Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.1e-108 396.7 218 100.0
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.2e-64 249.6 155 79.4
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 1.6e-62 243.4 203 65.5
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 3.1e-58 229.2 153 71.2
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 2.2e-56 223.0 147 70.7
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.2e-56 223.0 156 69.9
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 2.2e-56 223.0 156 69.9
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 2.2e-56 223.0 157 66.9
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 6.4e-56 221.5 215 56.7
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 1.9e-55 219.9 148 70.9
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 1.9e-55 219.9 156 67.3
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 1.6e-54 216.9 156 66.7
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 2.1e-54 216.5 216 57.4
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.7e-54 216.1 208 56.2
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 3.5e-54 215.7 217 58.1
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 3.5e-54 215.7 207 57.0
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 4.6e-54 215.3 148 70.3
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 1.3e-53 213.8 151 68.2
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 1.3e-53 213.8 145 70.3
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 1.8e-53 213.4 216 56.0
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 1.8e-53 213.4 216 56.0
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 1.8e-53 213.4 156 64.7
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 2.3e-53 213.0 216 54.6
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 5.1e-53 211.8 148 67.6
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 6.7e-53 211.5 216 55.6
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 6.7e-53 211.5 146 67.8
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.1e-52 210.7 216 54.2
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.9e-52 209.9 206 53.9
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 1.9e-52 209.9 207 56.0
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.9e-52 209.9 148 66.9
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 2.5e-52 209.5 152 68.4
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 2.5e-52 209.5 152 68.4
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 4.3e-52 208.8 206 55.3
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 5.6e-52 208.4 155 63.2
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 5.6e-52 208.4 213 54.0
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 5.6e-52 208.4 215 55.8
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 7.4e-52 208.0 156 66.7
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.3e-51 207.2 148 68.2
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 2.1e-51 206.5 163 61.3
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 2.1e-51 206.5 149 67.1
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 2.1e-51 206.5 216 54.2
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 2.1e-51 206.5 149 65.1
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 2.8e-51 206.1 220 53.6
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 2.8e-51 206.1 148 69.6
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 4.8e-51 205.3 215 53.5
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 4.8e-51 205.3 155 64.5
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 4.8e-51 205.3 224 54.9
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 6.2e-51 204.9 149 65.8
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 6.2e-51 204.9 206 54.9
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 6.2e-51 204.9 216 54.2
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 8.1e-51 204.5 157 61.8
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 8.1e-51 204.5 216 53.2
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 8.1e-51 204.5 200 54.0
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 8.1e-51 204.5 156 60.9
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 1.1e-50 204.1 207 53.1
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 1.4e-50 203.8 148 64.2
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 1.4e-50 203.8 215 52.1
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 1.8e-50 203.4 150 62.0
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.8e-50 203.4 148 62.8
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.8e-50 203.4 218 54.6
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 2.4e-50 203.0 215 53.0
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.4e-50 203.0 148 66.2
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 3.1e-50 202.6 207 53.1
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 4.0e-50 202.2 217 54.4
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 4.0e-50 202.2 217 54.4
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 4.0e-50 202.2 219 54.3
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 5.3e-50 201.8 151 66.9
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 5.3e-50 201.8 207 53.6
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 6.9e-50 201.4 217 55.3
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 6.9e-50 201.4 148 66.2
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 9.0e-50 201.1 210 54.3
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 1.2e-49 200.7 156 60.9
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 1.2e-49 200.7 150 65.3
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.2e-49 200.7 148 64.9
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 1.2e-49 200.7 141 68.8
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 1.2e-49 200.7 215 52.6
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 1.5e-49 200.3 218 53.2
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.5e-49 200.3 148 65.5
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.5e-49 200.3 219 53.9
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 2.0e-49 199.9 154 63.6
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 2.0e-49 199.9 218 55.0
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 2.6e-49 199.5 217 51.6
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 2.6e-49 199.5 218 54.1
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 3.4e-49 199.1 216 53.7
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 4.5e-49 198.7 157 61.8
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 7.6e-49 198.0 148 64.9
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 1.0e-48 197.6 148 64.2
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 1.3e-48 197.2 218 52.8
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 1.3e-48 197.2 148 64.9
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 1.7e-48 196.8 226 51.8
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 1.7e-48 196.8 218 52.8
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.7e-48 196.8 150 63.3
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 4.9e-48 195.3 164 59.1
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 6.5e-48 194.9 148 64.2
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 8.4e-48 194.5 139 66.9
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 1.1e-47 194.1 152 61.8
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 2.5e-47 193.0 139 70.5
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 2.5e-47 193.0 139 70.5
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 2.5e-47 193.0 139 70.5
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 3.2e-47 192.6 226 51.3
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 3.2e-47 192.6 154 63.6
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 5.5e-47 191.8 156 59.0
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.2e-46 190.7 155 60.0
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 1.2e-46 190.7 146 61.6
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 1.2e-46 190.7 148 64.2
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 1.6e-46 190.3 211 50.2
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 2.1e-46 189.9 156 57.7
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 2.1e-46 189.9 139 69.1
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 2.7e-46 189.5 148 60.1
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 3.5e-46 189.1 218 51.8
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 3.5e-46 189.1 218 51.8
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 6.0e-46 188.3 212 50.0
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 6.0e-46 188.3 145 66.2
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 7.9e-46 188.0 183 53.0
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.8e-45 186.8 215 50.7
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-45 186.8 155 63.2
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 1.8e-45 186.8 155 63.2
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 2.3e-45 186.4 215 51.6
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 3.0e-45 186.0 156 57.7
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 5.1e-45 185.3 191 50.8
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 6.7e-45 184.9 183 51.9
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 1.9e-44 183.3 148 61.5
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.5e-44 183.0 125 69.6
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 2.5e-44 183.0 148 63.5
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 7.4e-44 181.4 123 69.9
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 7.4e-44 181.4 222 50.5
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 1.6e-43 180.3 149 61.1
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 2.8e-43 179.5 160 57.5
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 3.7e-43 179.1 182 51.1
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 4.8e-43 178.7 155 60.6
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 4.8e-43 178.7 142 64.1
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 6.3e-43 178.3 213 48.8
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.8e-42 176.8 218 45.0
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 2.6e-41 172.9 123 69.9
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 1.3e-40 170.6 123 69.1
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 2.9e-40 169.5 109 74.3
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.1e-39 167.5 216 50.9
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.6e-38 163.7 148 56.8
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 4.6e-38 162.2 133 60.9
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.0e-37 161.0 169 54.4
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 1.3e-37 160.6 144 56.2
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.0e-37 159.5 183 53.6
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 1.8e-34 150.2 113 64.6
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 6.9e-34 148.3 100 69.0
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 2.6e-33 146.4 168 50.6
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 2.2e-32 143.3 170 50.6
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.8e-29 133.7 157 54.8
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 2.3e-29 133.3 239 40.6
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 1.1e-28 131.0 81 76.5
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 2.2e-27 126.7 93 64.5
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 4.1e-26 122.5 90 65.6
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 2.0e-25 120.2 115 56.5
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 1.1e-23 114.4 149 46.3
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 4.7e-22 109.0 154 37.7
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 6.7e-21 105.1 96 54.2
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 5.7e-20 102.1 170 36.5
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 1.8e-18 97.1 142 43.7
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 7.0e-18 95.1 80 58.8
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 2.6e-12 76.6 77 54.5
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 2.9e-08 63.2 92 41.3
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.8e-08 62.8 49 61.2
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 6.5e-08 62.0 186 29.0


User provided reference genes

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