Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_1830 Physcomitrium patens HOM05D002567 ORTHO05D007435 0.0e+00 1328.5 686 100.0
Pp3c10_1060 Physcomitrium patens HOM05D002567 ORTHO05D007435 2.7e-233 812.4 688 67.3
Mapoly0007s0103 Marchantia polymorpha HOM05D002567 ORTHO05D007435 9.2e-117 425.2 362 61.9
Lalb_Chr06g0163361 Lupinus albus HOM05D002567 ORTHO05D007435 2.8e-105 387.1 560 43.4
Sc05g0004310 Simmondsia chinensis HOM05D002567 ORTHO05D007435 2.8e-105 387.1 556 43.3
Sed0025005 Sechium edule HOM05D002567 ORTHO05D007435 6.2e-105 386.0 511 43.2
Manes.05G065800 Manihot esculenta HOM05D002567 ORTHO05D007435 8.1e-105 385.6 512 44.9
COL.COLO4_07998 Corchorus olitorius HOM05D002567 ORTHO05D006538 1.4e-104 384.8 513 45.8
ATR0706G146 Amborella trichopoda HOM05D002567 ORTHO05D007435 4.0e-104 383.3 509 45.8
TAR365G0282 Trochodendron aralioides HOM05D002567 ORTHO05D007435 9.0e-104 382.1 515 45.8
Ciclev10019856m.g Citrus clementina HOM05D002567 ORTHO05D007435 1.5e-103 381.3 510 43.5
Lj5g0023248 Lotus japonicus HOM05D002567 ORTHO05D007435 1.5e-103 381.3 512 43.4
Gohir.D08G083800 Gossypium hirsutum HOM05D002567 ORTHO05D007435 7.6e-103 379.0 561 41.9
Glyma.02G153800 Glycine max HOM05D002567 ORTHO05D007435 1.3e-102 378.3 511 43.8
Gohir.A08G074500 Gossypium hirsutum HOM05D002567 ORTHO05D007435 1.3e-102 378.3 511 44.0
SalBow3G3633 Salvia bowleyana HOM05D002567 ORTHO05D007435 1.3e-102 378.3 531 43.5
Eucgr.K03452 Eucalyptus grandis HOM05D002567 ORTHO05D007435 6.4e-102 375.9 522 44.1
Thecc.01G294000 Theobroma cacao HOM05D002567 ORTHO05D007435 6.4e-102 375.9 515 43.9
TPR.G33972 Trifolium pratense HOM05D002567 ORTHO05D007435 6.4e-102 375.9 512 44.9
TWI14G0999 Tripterygium wilfordii HOM05D002567 ORTHO05D007435 1.4e-101 374.8 516 44.0
Cpa.g.sc9.190 Carica papaya HOM05D002567 ORTHO05D007435 2.4e-101 374.0 515 43.3
Cc01_g20520 Coffea canephora HOM05D002567 ORTHO05D007435 2.4e-101 374.0 512 41.8
CANSAT25G3369 Cannabis sativa HOM05D002567 ORTHO05D007435 4.2e-101 373.2 511 43.4
Phvul.007G165166 Phaseolus vulgaris HOM05D002567 ORTHO05D007435 4.2e-101 373.2 514 44.0
SMO145G0291 Selaginella moellendorffii HOM05D002567 ORTHO05D007435 7.1e-101 372.5 345 58.6
ClCG09G006190 Citrullus lanatus HOM05D002567 ORTHO05D007435 1.2e-100 371.7 515 41.9
Os03g0346800 Oryza sativa ssp. japonica HOM05D002567 ORTHO05D007435 1.6e-100 371.3 523 42.3
Prupe.8G255700 Prunus persica HOM05D002567 ORTHO05D007435 1.6e-100 371.3 520 43.3
CiPaw.07G103700 Carya illinoinensis HOM05D002567 ORTHO05D007435 2.7e-100 370.5 514 44.4
THA.LOC104817512 Tarenaya hassleriana HOM05D002567 ORTHO05D007435 3.5e-100 370.2 517 42.7
Glyma.10G020300 Glycine max HOM05D002567 ORTHO05D007435 4.6e-100 369.8 557 42.4
MD03G1284200 Malus domestica HOM05D002567 ORTHO05D007435 4.6e-100 369.8 529 41.4
Thhalv10001431m.g Eutrema salsugineum HOM05D002567 ORTHO05D007435 6.0e-100 369.4 526 41.4
Medtr1g088870 Medicago truncatula HOM05D002567 ORTHO05D007435 6.0e-100 369.4 510 43.3
GSVIVG01010968001 Vitis vinifera HOM05D002567 ORTHO05D007435 6.0e-100 369.4 511 45.4
Gorai.004G088200 Gossypium raimondii HOM05D002567 ORTHO05D007435 7.9e-100 369.0 562 42.2
RcHm_v2.0_Chr6g0293181 Rosa chinensis HOM05D002567 ORTHO05D007435 1.0e-99 368.6 517 42.4
BraA03t11823Z Brassica rapa HOM05D002567 ORTHO05D007435 1.3e-99 368.2 513 42.5
Hund05401 Selenicereus undatus HOM05D002567 ORTHO05D007435 1.8e-99 367.9 522 42.3
Migut.D00184 Erythranthe guttata HOM05D002567 ORTHO05D007435 2.3e-99 367.5 512 42.6
A03p26080 Brassica napus HOM05D002567 ORTHO05D007435 3.9e-99 366.7 513 42.1
Aa31LG1G29180 Aethionema arabicum HOM05D002567 ORTHO05D007435 5.1e-99 366.3 514 42.4
Cfa005987 Carpinus fangiana HOM05D002567 ORTHO05D007435 5.1e-99 366.3 520 42.3
Aqoxy5G00699 Aquilegia oxysepala HOM05D002567 ORTHO05D007435 6.7e-99 365.9 514 40.7
FvH4_c6g00080 Fragaria vesca HOM05D002567 ORTHO05D007435 6.7e-99 365.9 525 41.7
QL12p030562 Quercus lobata HOM05D002567 ORTHO05D007435 6.7e-99 365.9 514 42.4
FvH4_c6g00110 Fragaria vesca HOM05D002567 ORTHO05D007435 1.5e-98 364.8 504 42.7
PGR044G2614 Punica granatum HOM05D002567 ORTHO05D007435 1.5e-98 364.8 520 44.0
C03p31100 Brassica napus HOM05D002567 ORTHO05D007435 2.5e-98 364.0 514 42.6
CARHR143220 Cardamine hirsuta HOM05D002567 ORTHO05D007435 2.5e-98 364.0 513 41.5
Ca_10357_v3 Cicer arietinum L. HOM05D002567 ORTHO05D007435 2.5e-98 364.0 517 45.3
BcaB01g03155 Brassica carinata HOM05D002567 ORTHO05D007435 7.4e-98 362.5 516 42.2
AT2G47830 Arabidopsis thaliana HOM05D002567 ORTHO05D007435 9.6e-98 362.1 531 41.1
Sp4g29760 Schrenkiella parvula HOM05D002567 ORTHO05D007435 3.7e-97 360.1 518 41.7
BcaC01g05016 Brassica carinata HOM05D002567 ORTHO05D007435 4.8e-97 359.8 513 41.9
FAN20G2691 Fragaria x ananassa HOM05D002567 ORTHO05D007435 4.8e-97 359.8 543 40.5
BolC3t15458H Brassica oleracea HOM05D002567 ORTHO05D007435 6.2e-97 359.4 513 41.7
VMungo0720G1827 Vigna mungo HOM05D002567 ORTHO05D007435 6.2e-97 359.4 514 44.0
Actinidia24843 Actinidia chinensis HOM05D002567 ORTHO05D007435 8.1e-97 359.0 512 43.2
PSO832G0331 Papaver somniferum HOM05D002567 ORTHO05D007435 8.1e-97 359.0 571 38.9
AL4G47410 Arabidopsis lyrata HOM05D002567 ORTHO05D007435 1.4e-96 358.2 530 41.5
FAN24G0883 Fragaria x ananassa HOM05D002567 ORTHO05D007435 1.8e-96 357.8 543 40.3
Nn5g30061 Nelumbo nucifera HOM05D002567 ORTHO05D007435 2.4e-96 357.5 511 42.1
Oeu046707.1 Olea europaea HOM05D002567 ORTHO05D007435 5.8e-95 352.8 514 41.2
Rhsim01G0282400 Rhododendron simsii HOM05D002567 ORTHO05D007435 5.8e-95 352.8 511 41.3
SGA_v2.0_scaffold1G00388 Striga asiatica HOM05D002567 ORTHO05D007435 5.8e-95 352.8 560 39.5
Haze_04858 Corylus avellana HOM05D002567 ORTHO05D006538 8.4e-94 349.0 510 43.1
ECA248G3501 Erigeron canadensis HOM05D002567 ORTHO05D007435 4.2e-93 346.7 332 55.7
PGSC0003DMG402011364 Solanum tuberosum HOM05D002567 ORTHO05D007435 1.2e-92 345.1 512 40.4
Sopen09g029600 Solanum pennellii HOM05D002567 ORTHO05D007435 1.6e-92 344.7 512 40.4
Lsat_1_v5_gn_5_189341 Lactuca sativa HOM05D002567 ORTHO05D007435 3.5e-92 343.6 342 54.7
HanXRQChr01g0001661 Helianthus annuus HOM05D002567 ORTHO05D007435 7.9e-92 342.4 346 53.8
vmacro14988 Vaccinium macrocarpon HOM05D002567 ORTHO05D007435 1.8e-91 341.3 496 42.7
FAN15G3695 Fragaria x ananassa HOM05D002567 ORTHO05D007435 5.1e-91 339.7 580 37.8
CSS0018114 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 6.7e-91 339.3 511 40.1
Nitab4.5_0001697g0140 Nicotiana tabacum HOM05D002567 ORTHO05D006538 3.3e-90 337.0 554 38.1
CSS0004593 Camellia sinensis var. sinensis HOM05D002567 ORTHO05D007435 9.6e-90 335.5 511 40.3
DCAR_012404 Daucus carota HOM05D002567 ORTHO05D007435 1.6e-89 334.7 518 41.3
Lj2C1189T5 Lonicera japonica HOM05D002567 ORTHO05D007435 1.5e-87 328.2 518 41.1
Duzib133G1128 Durio zibethinus HOM05D002567 ORTHO05D007435 4.9e-86 323.2 513 41.5
Psat6g167000 Pisum sativum HOM05D002567 ORTHO05D007435 2.5e-85 320.9 353 51.3
AUR62043263 Chenopodium quinoa HOM05D002567 ORTHO05D007435 5.5e-85 319.7 514 39.7
Nitab4.5_0001447g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 1.2e-84 318.5 514 39.5
AUR62033190 Chenopodium quinoa HOM05D002567 ORTHO05D007435 3.3e-82 310.5 493 40.0
CAN.G1562.6 Capsicum annuum HOM05D002567 ORTHO05D007435 2.8e-81 307.4 514 39.3
HPP92_011840 Vanilla planifolia HOM05D002567 ORTHO05D007435 2.8e-81 307.4 306 52.6
Ah.15g093860 Amaranthus hybridus HOM05D002567 ORTHO05D007435 7.6e-79 299.3 513 38.6
Dinv19731 Davidia involucrata HOM05D002567 ORTHO05D007435 6.7e-75 286.2 419 41.3
MELO3C016044.2 Cucumis melo HOM05D002567 ORTHO05D007435 6.9e-72 276.2 514 35.8
Hma1.2p1_0399F.1_g143930 Hydrangea macrophylla HOM05D002567 ORTHO05D007435 2.3e-67 261.2 423 40.2
Potri.002G209023 Populus trichocarpa HOM05D002567 ORTHO05D007435 3.8e-62 243.8 348 42.0
Carub.0004s3055 Capsella rubella HOM05D002567 ORTHO05D007435 1.9e-61 241.5 359 39.6
CsaV3_7G028940 Cucumis sativus L. HOM05D002567 ORTHO05D007435 3.2e-61 240.7 355 40.0
Zm00001eb016640 Zea mays HOM05D002567 ORTHO05D007435 3.6e-60 237.3 337 40.7
CDE02G2579 Ceratophyllum demersum HOM05D002567 ORTHO05D007435 3.0e-59 234.2 348 41.4
Sed0015917 Sechium edule HOM05D002567 ORTHO05D007435 1.9e-53 214.9 408 35.0
AUR62033191 Chenopodium quinoa HOM05D002567 ORTHO05D007435 2.1e-52 211.5 258 46.1
Atru.chr5.1231 Acer truncatum HOM05D002567 ORTHO05D007435 2.8e-49 201.1 199 56.3
FAN19G1365 Fragaria x ananassa HOM05D002567 ORTHO05D007435 9.1e-48 196.1 232 47.8
Solyc09g074740.2 Solanum lycopersicum HOM05D002567 ORTHO05D007435 1.6e-47 195.3 225 49.8
Peaxi162Scf00067g01814 Petunia axillaris HOM05D002567 ORTHO05D007435 3.2e-45 187.6 252 47.2
Solyc09g074750.3 Solanum lycopersicum HOM05D002567 ORTHO05D007435 1.4e-35 155.6 294 33.0
Peaxi162Scf00067g01819 Petunia axillaris HOM05D002567 ORTHO05D007435 3.0e-35 154.5 289 32.9
Atru.chr5.1230 Acer truncatum HOM05D002567 ORTHO05D007435 1.6e-31 142.1 268 33.2
MCO08G095 Micromonas commoda HOM05D002567 ORTHO05D007435 4.4e-26 124.0 339 28.0
PRCOL_00000973 Prasinoderma coloniale HOM05D002567 ORTHO05D007435 3.2e-24 117.9 310 32.3
Cfa024758 Carpinus fangiana HOM05D002567 ORTHO05D007435 9.2e-24 116.3 359 28.1
arahy.Tifrunner.gnm1.ann1.5I5ID6 Arachis hypogaea HOM05D002567 ORTHO05D007435 4.4e-18 97.4 92 55.4
arahy.Tifrunner.gnm1.ann1.L0WASJ Arachis hypogaea HOM05D002567 ORTHO05D007435 4.4e-18 97.4 92 55.4
arahy.Tifrunner.gnm1.ann1.XK0FMC Arachis hypogaea HOM05D002567 ORTHO05D007435 1.7e-17 95.5 265 31.3
DCAR_017872 Daucus carota HOM05D002567 ORTHO05D007435 1.9e-16 92.0 73 61.6
CARHR055860 Cardamine hirsuta HOM05D002567 ORTHO05D007435 3.3e-13 81.3 92 46.7
Ciclev10006598m.g Citrus clementina HOM05D002567 ORTHO05D007435 6.2e-12 77.0 64 59.4
CAN.G312.11 Capsicum annuum HOM05D000586 ORTHO05D003356 8.1e-12 76.6 57 68.4
CAN.G1349.13 Capsicum annuum HOM05D000586 ORTHO05D007435 2.3e-11 75.1 124 37.9
Actinidia21062 Actinidia chinensis HOM05D002567 ORTHO05D007435 9.9e-10 69.7 67 56.7
Oeu011429.1 Olea europaea HOM05D002567 ORTHO05D007435 4.9e-09 67.4 48 66.7
CAN.G2.56 Capsicum annuum HOM05D000586 ORTHO05D003356 1.1e-08 66.2 58 58.6
CARHR220570 Cardamine hirsuta HOM05D002567 ORTHO05D007435 2.4e-08 65.1 94 39.4
Duzib133G1109 Durio zibethinus HOM05D002567 ORTHO05D007435 6.0e-07 60.5 83 38.6
MSTRG.7082 Avicennia marina HOM05D000870 ORTHO05D000715 7.8e-07 60.1 309 23.6
Sc08g0003310 Simmondsia chinensis HOM05D000870 ORTHO05D000715 1.7e-06 58.9 315 23.5
Ca_16274_v3 Cicer arietinum L. HOM05D000870 ORTHO05D000715 3.0e-06 58.2 332 23.5
Duzib133G0811 Durio zibethinus HOM05D002567 ORTHO05D007435 3.0e-06 58.2 83 37.3
Duzib268G0323 Durio zibethinus HOM05D000870 ORTHO05D000715 3.0e-06 58.2 335 22.7
SalBow8G1376 Salvia bowleyana HOM05D000870 ORTHO05D000715 3.0e-06 58.2 315 23.8
SalBow8G4043 Salvia bowleyana HOM05D000870 ORTHO05D000715 3.0e-06 58.2 315 23.8
SalBow8G5136 Salvia bowleyana HOM05D000870 ORTHO05D000715 3.0e-06 58.2 315 23.8
MD05G1235000 Malus domestica HOM05D000870 ORTHO05D000715 3.9e-06 57.8 312 23.4
Sc08g0003330 Simmondsia chinensis HOM05D000870 ORTHO05D000715 3.9e-06 57.8 315 23.5
GSVIVG01036746001 Vitis vinifera HOM05D000870 ORTHO05D000715 5.1e-06 57.4 330 23.3
AL2G40280 Arabidopsis lyrata HOM05D000870 ORTHO05D000715 6.6e-06 57.0 314 22.3
COL.COLO4_04573 Corchorus olitorius HOM05D000870 ORTHO05D000715 6.6e-06 57.0 335 23.0
Nitab4.5_0011064g0040 Nicotiana tabacum HOM05D002567 ORTHO05D007435 6.6e-06 57.0 119 35.3
Prupe.4G131200 Prunus persica HOM05D000870 ORTHO05D000715 6.6e-06 57.0 312 23.1
Rhsim06G0243200 Rhododendron simsii HOM05D000870 ORTHO05D000715 8.6e-06 56.6 373 22.3


User provided reference genes

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