Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_17660 Physcomitrium patens HOM05D017342 ORTHO05D314418 1.9e-261 905.2 438 100.0
Mapoly0013s0015 Marchantia polymorpha HOM05D001337 ORTHO05D008829 1.0e-23 115.5 239 30.1
Mapoly0811s0002 Marchantia polymorpha HOM05D007183 ORTHO05D008829 3.0e-20 104.0 303 27.1
Mapoly0001s0073 Marchantia polymorpha HOM05D017342 ORTHO05D001281 1.1e-17 95.5 229 27.9
Mapoly0141s0015 Marchantia polymorpha HOM05D001337 ORTHO05D008829 3.1e-17 94.0 303 24.4
HPP92_007589 Vanilla planifolia HOM05D001337 ORTHO05D001281 2.0e-16 91.3 248 28.2
Eucgr.B03615 Eucalyptus grandis HOM05D001337 ORTHO05D001281 3.8e-15 87.0 250 27.6
HPP92_016125 Vanilla planifolia HOM05D001337 ORTHO05D001281 3.8e-15 87.0 263 29.3
A05p04240 Brassica napus HOM05D001337 ORTHO05D001281 6.5e-15 86.3 252 27.0
BraA05t19409Z Brassica rapa HOM05D001337 ORTHO05D001281 6.5e-15 86.3 252 27.0
Pp3c3_15470 Physcomitrium patens HOM05D001337 ORTHO05D001281 3.2e-14 84.0 187 29.9
FvH4_3g45300 Fragaria vesca HOM05D001337 ORTHO05D001281 5.5e-14 83.2 317 25.2
FAN11G1285 Fragaria x ananassa HOM05D001337 ORTHO05D000872 5.5e-14 83.2 317 25.2
RcHm_v2.0_Chr5g0082971 Rosa chinensis HOM05D001337 ORTHO05D001281 5.5e-14 83.2 322 26.1
FAN25G1208 Fragaria x ananassa HOM05D001337 ORTHO05D001281 2.1e-13 81.3 317 24.3
SMO364G0049 Selaginella moellendorffii HOM05D001337 ORTHO05D008829 2.1e-13 81.3 167 32.9
Mapoly0096s0062 Marchantia polymorpha HOM05D000667 ORTHO05D003095 3.6e-13 80.5 181 34.3
FAN16G0078 Fragaria x ananassa HOM05D001337 ORTHO05D001281 4.7e-13 80.1 301 24.6
SMO197G0038 Selaginella moellendorffii HOM05D001337 ORTHO05D001281 6.1e-13 79.7 142 32.4
MD03G1006500 Malus domestica HOM05D001337 ORTHO05D001281 1.0e-12 79.0 285 24.6
Cc06_g23270 Coffea canephora HOM05D001337 ORTHO05D001281 1.8e-12 78.2 173 28.9
MBI10_g06571_MAGBIO Magnolia biondii HOM05D001337 ORTHO05D001281 1.8e-12 78.2 135 34.1
MELO3C014678.2 Cucumis melo HOM05D001337 ORTHO05D001281 2.3e-12 77.8 180 27.2
ClCG02G023980 Citrullus lanatus HOM05D001337 ORTHO05D001281 6.7e-12 76.3 178 27.5
Rhsim12G0196300 Rhododendron simsii HOM05D001337 ORTHO05D001281 6.7e-12 76.3 186 29.6
Sabra16G0064300 Salix brachista HOM05D001337 ORTHO05D001281 6.7e-12 76.3 250 24.0
Sed0021459 Sechium edule HOM05D007183 ORTHO05D008829 8.8e-12 75.9 182 28.6
Prupe.6G006200 Prunus persica HOM05D001337 ORTHO05D001281 1.1e-11 75.5 285 24.2
Cc04_g03570 Coffea canephora HOM05D001337 ORTHO05D001281 1.5e-11 75.1 240 25.8
vmacro16944 Vaccinium macrocarpon HOM05D001337 ORTHO05D001281 1.5e-11 75.1 189 29.1
Manes.01G009100 Manihot esculenta HOM05D001337 ORTHO05D001281 2.0e-11 74.7 249 24.5
Mapoly0088s0011 Marchantia polymorpha HOM05D017342 ORTHO05D000206 2.0e-11 74.7 243 24.3
PGR102G1506 Punica granatum HOM05D001337 ORTHO05D001281 2.0e-11 74.7 137 32.1
arahy.Tifrunner.gnm1.ann1.H1080P Arachis hypogaea HOM05D001337 ORTHO05D001281 2.6e-11 74.3 309 24.3
DCAR_013676 Daucus carota HOM05D001337 ORTHO05D001281 2.6e-11 74.3 190 26.8
QL10p065170 Quercus lobata HOM05D001337 ORTHO05D001281 2.6e-11 74.3 250 24.4
Duzib235G0651 Durio zibethinus HOM05D001337 ORTHO05D001281 4.4e-11 73.6 200 29.0
Nn2g15807 Nelumbo nucifera HOM05D001337 ORTHO05D001281 4.4e-11 73.6 179 26.3
Peaxi162Scf00463g00024 Petunia axillaris HOM05D001337 ORTHO05D001281 9.7e-11 72.4 179 28.5
CDE07G1861 Ceratophyllum demersum HOM05D001337 ORTHO05D001281 1.3e-10 72.0 336 25.0
Sed0019047 Sechium edule HOM05D001337 ORTHO05D001281 1.3e-10 72.0 178 27.0
AagrBONN_evm.TU.Sc2ySwM_344.4698 Anthoceros agrestis HOM05D000667 ORTHO05D003095 1.7e-10 71.6 321 24.9
DCAR_017044 Daucus carota HOM05D001337 ORTHO05D001281 1.7e-10 71.6 189 27.5
Dinv25013 Davidia involucrata HOM05D001337 ORTHO05D001281 1.7e-10 71.6 189 26.5
SMO111G0147 Selaginella moellendorffii HOM05D017342 ORTHO05D030586 1.7e-10 71.6 205 27.3
SMO351G0081 Selaginella moellendorffii HOM05D017342 ORTHO05D030586 1.7e-10 71.6 205 27.3
unitig_60.g25519 Utricularia gibba HOM05D001337 ORTHO05D001281 2.8e-10 70.9 268 23.5
CSS0038963 Camellia sinensis var. sinensis HOM05D001337 ORTHO05D001281 3.7e-10 70.5 173 30.1
Ciclev10025956m.g Citrus clementina HOM05D001337 ORTHO05D001281 3.7e-10 70.5 147 30.6
Hma1.2p1_0682F.1_g202680 Hydrangea macrophylla HOM05D001337 ORTHO05D001281 3.7e-10 70.5 204 26.5
Actinidia14366 Actinidia chinensis HOM05D001337 ORTHO05D001281 4.8e-10 70.1 183 29.0
CSS0046299 Camellia sinensis var. sinensis HOM05D001337 ORTHO05D001281 4.8e-10 70.1 174 28.2
Ca_17952_v3 Cicer arietinum L. HOM05D001337 ORTHO05D001281 4.8e-10 70.1 287 24.0
Mapoly0016s0093 Marchantia polymorpha HOM05D001337 ORTHO05D001281 4.8e-10 70.1 96 38.5
Pp3c26_7990 Physcomitrium patens HOM05D001337 ORTHO05D001281 4.8e-10 70.1 134 32.1
vmacro16943 Vaccinium macrocarpon HOM05D001337 ORTHO05D001281 4.8e-10 70.1 185 27.6
Haze_22972 Corylus avellana HOM05D001337 ORTHO05D001281 6.3e-10 69.7 263 25.9
Lj2P361T21 Lonicera japonica HOM05D001337 ORTHO05D001281 8.2e-10 69.3 172 26.2
Prupe.7G085300 Prunus persica HOM05D001337 ORTHO05D001281 8.2e-10 69.3 189 26.5
Hma1.2p1_0516F.1_g170630 Hydrangea macrophylla HOM05D001337 ORTHO05D001281 1.1e-09 68.9 189 27.0
SalBow2G2593 Salvia bowleyana HOM05D001337 ORTHO05D001281 1.1e-09 68.9 125 34.4
Nn7g35908 Nelumbo nucifera HOM05D001337 ORTHO05D001281 1.4e-09 68.6 171 26.3
Pp3c13_12640 Physcomitrium patens HOM05D001337 ORTHO05D001281 1.4e-09 68.6 301 23.3
Potri.003G218400 Populus trichocarpa HOM05D001337 ORTHO05D001281 1.4e-09 68.6 189 26.5
TWI60G1228 Tripterygium wilfordii HOM05D001337 ORTHO05D001281 1.4e-09 68.6 172 28.5
HPP92_003642 Vanilla planifolia HOM05D001337 ORTHO05D001281 1.4e-09 68.6 204 27.5
CSS0009976 Camellia sinensis var. sinensis HOM05D001337 ORTHO05D001281 1.8e-09 68.2 189 27.5
MD11G1009500 Malus domestica HOM05D001337 ORTHO05D001281 1.8e-09 68.2 171 27.5
Potri.001G178500 Populus trichocarpa HOM05D001337 ORTHO05D001281 1.8e-09 68.2 307 21.5
Sabra03G0162800 Salix brachista HOM05D001337 ORTHO05D001281 1.8e-09 68.2 189 27.5
CDE06G1862 Ceratophyllum demersum HOM05D001337 ORTHO05D001281 2.4e-09 67.8 147 32.0
Mapoly0096s0073 Marchantia polymorpha HOM05D001337 ORTHO05D001281 2.4e-09 67.8 125 32.0
PGSC0003DMG400016541 Solanum tuberosum HOM05D001337 ORTHO05D001281 2.4e-09 67.8 133 33.8
Ciclev10020147m.g Citrus clementina HOM05D001337 ORTHO05D001281 3.1e-09 67.4 295 22.7
Medtr8g085650 Medicago truncatula HOM05D001337 ORTHO05D001281 3.1e-09 67.4 285 24.2
Cc05_g06690 Coffea canephora HOM05D007183 ORTHO05D008829 4.1e-09 67.0 157 28.7
Potri.001G007000 Populus trichocarpa HOM05D001337 ORTHO05D001281 4.1e-09 67.0 189 26.5
PGSC0003DMG400016540 Solanum tuberosum HOM05D001337 ORTHO05D001281 4.1e-09 67.0 133 33.8
Carub.0002s2714 Capsella rubella HOM05D001337 ORTHO05D001281 5.3e-09 66.6 200 27.5
Duzib093G0564 Durio zibethinus HOM05D001337 ORTHO05D001281 5.3e-09 66.6 208 27.9
Nn6g34111 Nelumbo nucifera HOM05D003852 ORTHO05D003095 5.3e-09 66.6 304 25.7
Psat7g073560 Pisum sativum HOM05D001337 ORTHO05D001281 5.3e-09 66.6 172 26.2
Cfa009597 Carpinus fangiana HOM05D001337 ORTHO05D001281 7.0e-09 66.2 147 29.3
Lj5C62T9 Lonicera japonica HOM05D001337 ORTHO05D001281 7.0e-09 66.2 134 30.6
Sed0011515 Sechium edule HOM05D001337 ORTHO05D001281 7.0e-09 66.2 180 27.2
Potri.006G196900 Populus trichocarpa HOM05D001337 ORTHO05D001281 9.1e-09 65.9 135 28.1
Nn2g11833 Nelumbo nucifera HOM05D001337 ORTHO05D001281 1.2e-08 65.5 147 29.3
TWI12G1350 Tripterygium wilfordii HOM05D001337 ORTHO05D001281 1.2e-08 65.5 212 25.5
AagrBONN_evm.TU.Sc2ySwM_117.2587 Anthoceros agrestis HOM05D006800 ORTHO05D008478 1.6e-08 65.1 298 24.8
Rhsim12G0196900 Rhododendron simsii HOM05D001337 ORTHO05D001281 1.6e-08 65.1 185 28.1
THA.LOC104808205 Tarenaya hassleriana HOM05D001337 ORTHO05D001281 1.6e-08 65.1 250 23.6
ClCG10G017780 Citrullus lanatus HOM05D001337 ORTHO05D001281 2.0e-08 64.7 224 24.6
SMO358G0266 Selaginella moellendorffii HOM05D007183 ORTHO05D008829 2.0e-08 64.7 275 24.0
Rhsim08G0218800 Rhododendron simsii HOM05D001337 ORTHO05D001281 2.6e-08 64.3 314 23.6
SMO141G0300 Selaginella moellendorffii HOM05D017342 ORTHO05D376115 2.6e-08 64.3 197 27.4
THA.LOC104812470 Tarenaya hassleriana HOM05D001337 ORTHO05D001281 2.6e-08 64.3 153 28.8
Atru.chr8.1218 Acer truncatum HOM05D001337 ORTHO05D001281 3.5e-08 63.9 183 26.8
Aqoxy1G00432 Aquilegia oxysepala HOM05D001337 ORTHO05D001281 3.5e-08 63.9 146 30.1
HanXRQChr05g0140521 Helianthus annuus HOM05D007183 ORTHO05D008829 3.5e-08 63.9 193 23.8
PGSC0003DMG400016542 Solanum tuberosum HOM05D001337 ORTHO05D001281 3.5e-08 63.9 133 33.1
Thecc.05G179900 Theobroma cacao HOM05D001337 ORTHO05D001281 3.5e-08 63.9 208 26.4
TAR369G0799 Trochodendron aralioides HOM05D001337 ORTHO05D001281 3.5e-08 63.9 189 27.5
GSVIVG01030561001 Vitis vinifera HOM05D007183 ORTHO05D008829 3.5e-08 63.9 193 26.4
Potri.017G000700 Populus trichocarpa HOM05D001337 ORTHO05D001281 4.5e-08 63.5 260 27.3
Sopen06g025050 Solanum pennellii HOM05D001337 ORTHO05D001281 4.5e-08 63.5 133 33.1
COL.COLO4_32975 Corchorus olitorius HOM05D000667 ORTHO05D003095 5.9e-08 63.2 297 23.9
Peaxi162Scf01158g00028 Petunia axillaris HOM05D003852 ORTHO05D003095 5.9e-08 63.2 250 25.2
COL.COLO4_35412 Corchorus olitorius HOM05D007183 ORTHO05D008829 7.7e-08 62.8 144 29.2
Manes.09G040100 Manihot esculenta HOM05D001337 ORTHO05D001281 7.7e-08 62.8 135 25.9
Cc01_g19260 Coffea canephora HOM05D003852 ORTHO05D003095 1.0e-07 62.4 247 25.1
PGSC0003DMG400005330 Solanum tuberosum HOM05D003852 ORTHO05D003095 1.0e-07 62.4 243 26.3
MSTRG.21546 Avicennia marina HOM05D003852 ORTHO05D003095 1.3e-07 62.0 247 26.7
Manes.12G040400 Manihot esculenta HOM05D000667 ORTHO05D003095 1.3e-07 62.0 169 30.2
PSO063G0541 Papaver somniferum HOM05D001337 ORTHO05D001281 1.3e-07 62.0 249 23.3
Sabra07G0114400 Salix brachista HOM05D001337 ORTHO05D001281 1.3e-07 62.0 253 26.5
Haze_13111 Corylus avellana HOM05D007183 ORTHO05D008829 1.7e-07 61.6 145 28.3
Nitab4.5_0019872g0010 Nicotiana tabacum HOM05D001337 ORTHO05D001281 1.7e-07 61.6 209 27.8
AUR62011618 Chenopodium quinoa HOM05D001337 ORTHO05D001281 2.2e-07 61.2 199 26.6
Manes.13G149600 Manihot esculenta HOM05D007183 ORTHO05D008829 2.2e-07 61.2 132 28.0
TAR383G1043 Trochodendron aralioides HOM05D001337 ORTHO05D001281 2.2e-07 61.2 151 27.2
A07p45250 Brassica napus HOM05D001337 ORTHO05D001281 2.9e-07 60.8 198 25.3
Glyma.05G155600 Glycine max HOM05D001337 ORTHO05D001281 2.9e-07 60.8 172 26.7
Potri.007G147000 Populus trichocarpa HOM05D001337 ORTHO05D001281 2.9e-07 60.8 255 27.1
QL01p008182 Quercus lobata HOM05D001337 ORTHO05D001281 2.9e-07 60.8 189 24.9
MSTRG.18249 Avicennia marina HOM05D003852 ORTHO05D003095 3.8e-07 60.5 247 23.9
MD05G1322500 Malus domestica HOM05D007183 ORTHO05D008829 3.8e-07 60.5 187 26.2
SMO351G0605 Selaginella moellendorffii HOM05D001337 ORTHO05D001281 3.8e-07 60.5 242 25.2
Solyc06g008690.1 Solanum lycopersicum HOM05D003852 ORTHO05D003095 3.8e-07 60.5 243 25.9
Dinv03840 Davidia involucrata HOM05D007183 ORTHO05D008829 5.0e-07 60.1 144 27.8
PSO782G4344 Papaver somniferum HOM05D001337 ORTHO05D001281 5.0e-07 60.1 249 21.3
Rhsim12G0196700 Rhododendron simsii HOM05D001337 ORTHO05D001281 5.0e-07 60.1 188 26.1
TPR.G24333 Trifolium pratense HOM05D003852 ORTHO05D003095 5.0e-07 60.1 218 22.5
MD13G1136500 Malus domestica HOM05D003852 ORTHO05D003095 6.5e-07 59.7 168 29.2
TAR623G0669 Trochodendron aralioides HOM05D000118 ORTHO05D000872 6.5e-07 59.7 189 25.4
Oeu017375.1 Olea europaea HOM05D003852 ORTHO05D003095 8.5e-07 59.3 247 23.9
CAN.G1492.12 Capsicum annuum HOM05D003852 ORTHO05D003095 1.1e-06 58.9 243 25.9
PSO063G3894 Papaver somniferum HOM05D001337 ORTHO05D001281 1.1e-06 58.9 148 27.0
ATR0037G014 Amborella trichopoda HOM05D001337 ORTHO05D001281 1.5e-06 58.5 138 26.1
EL10Ac9g21985 Beta vulgaris HOM05D001337 ORTHO05D001281 1.5e-06 58.5 174 28.2
Oeu023611.1 Olea europaea HOM05D003852 ORTHO05D003095 1.5e-06 58.5 245 26.1
PSO478G1262 Papaver somniferum HOM05D001337 ORTHO05D001281 1.9e-06 58.2 211 24.6
Pp3c9_7690 Physcomitrium patens HOM05D001337 ORTHO05D001281 1.9e-06 58.2 210 25.7
Rhsim13G0026700 Rhododendron simsii HOM05D003852 ORTHO05D003095 1.9e-06 58.2 249 25.7
Cc01_g02570 Coffea canephora HOM05D001337 ORTHO05D001281 2.5e-06 57.8 210 24.3
Phvul.001G153400 Phaseolus vulgaris HOM05D003852 ORTHO05D003095 2.5e-06 57.8 202 25.7
Sed0008186 Sechium edule HOM05D003852 ORTHO05D003095 2.5e-06 57.8 300 23.3
Atru.chr5.1475 Acer truncatum HOM05D003852 ORTHO05D003095 3.2e-06 57.4 245 26.9
Gohir.D02G181900 Gossypium hirsutum HOM05D007183 ORTHO05D008829 3.2e-06 57.4 149 26.2
Gorai.005G204400 Gossypium raimondii HOM05D007183 ORTHO05D008829 3.2e-06 57.4 149 26.2
Thecc.05G247000 Theobroma cacao HOM05D000667 ORTHO05D003095 3.2e-06 57.4 128 32.8
ECA236G4763 Erigeron canadensis HOM05D003852 ORTHO05D003095 4.2e-06 57.0 247 23.5
Glyma.10G028000 Glycine max HOM05D003852 ORTHO05D003095 4.2e-06 57.0 292 22.3
Gohir.D11G129500 Gossypium hirsutum HOM05D003852 ORTHO05D003095 4.2e-06 57.0 199 27.1
PSO017G5148 Papaver somniferum HOM05D001337 ORTHO05D001281 4.2e-06 57.0 213 26.8
QL06p014826 Quercus lobata HOM05D000667 ORTHO05D003095 4.2e-06 57.0 169 28.4
A10p12790 Brassica napus HOM05D000249 ORTHO05D000206 5.5e-06 56.6 130 30.8
Pp3c10_1490 Physcomitrium patens HOM05D001337 ORTHO05D001281 5.5e-06 56.6 113 32.7
CARHR210870 Cardamine hirsuta HOM05D000249 ORTHO05D000206 7.2e-06 56.2 110 30.9
Gohir.A03G158800 Gossypium hirsutum HOM05D007183 ORTHO05D008829 7.2e-06 56.2 149 26.2
VMungo1383G1271 Vigna mungo HOM05D003852 ORTHO05D003095 7.2e-06 56.2 202 25.7
BolC5t34696H Brassica oleracea HOM05D000249 ORTHO05D000206 9.4e-06 55.8 105 30.5
SEGI_33410 Sequoiadendron giganteum HOM05D003852 ORTHO05D003095 9.4e-06 55.8 249 26.1


User provided reference genes

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