Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_17280 Physcomitrium patens HOM05D005419 ORTHO05D007365 1.9e-172 609.0 291 100.0
Pp3c2_14390 Physcomitrium patens HOM05D005419 ORTHO05D007365 3.5e-142 508.4 275 88.0
Mapoly0065s0048 Marchantia polymorpha HOM05D005419 ORTHO05D007365 2.1e-131 472.6 284 76.1
SMO358G0334 Selaginella moellendorffii HOM05D005419 ORTHO05D007365 7.1e-127 457.6 284 73.9
Cfa013117 Carpinus fangiana HOM05D005419 ORTHO05D007365 3.1e-122 442.2 281 70.8
Sed0010362 Sechium edule HOM05D005419 ORTHO05D007365 6.9e-122 441.0 281 70.5
QL02p020871 Quercus lobata HOM05D005419 ORTHO05D007365 9.0e-122 440.7 281 71.5
Peaxi162Scf00935g00015 Petunia axillaris HOM05D005419 ORTHO05D007365 3.4e-121 438.7 282 70.2
THA.LOC104815027 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 4.5e-121 438.3 284 70.8
arahy.Tifrunner.gnm1.ann1.2DG9CD Arachis hypogaea HOM05D005419 ORTHO05D007365 7.6e-121 437.6 284 71.1
arahy.Tifrunner.gnm1.ann1.X3TF0E Arachis hypogaea HOM05D005419 ORTHO05D007365 7.6e-121 437.6 284 71.1
CsaV3_2G032220 Cucumis sativus L. HOM05D005419 ORTHO05D007365 7.6e-121 437.6 281 70.5
PGR119G2552 Punica granatum HOM05D005419 ORTHO05D007365 1.0e-120 437.2 281 70.1
Atru.chr7.2482 Acer truncatum HOM05D005419 ORTHO05D007365 2.2e-120 436.0 281 70.1
TAR383G1021 Trochodendron aralioides HOM05D005419 ORTHO05D007365 2.2e-120 436.0 285 70.5
MELO3C011274.2 Cucumis melo HOM05D005419 ORTHO05D007365 2.9e-120 435.6 281 70.1
Dinv15871 Davidia involucrata HOM05D005419 ORTHO05D007365 2.9e-120 435.6 281 70.8
MD15G1129200 Malus domestica HOM05D005419 ORTHO05D007365 3.8e-120 435.3 281 70.1
Phvul.001G049700 Phaseolus vulgaris HOM05D005419 ORTHO05D007365 3.8e-120 435.3 281 70.8
VMungo0647G0032 Vigna mungo HOM05D005419 ORTHO05D007365 4.9e-120 434.9 281 70.5
Hma1.2p1_0974F.1_g243070 Hydrangea macrophylla HOM05D005419 ORTHO05D007365 6.5e-120 434.5 281 70.5
CiPaw.07G226000 Carya illinoinensis HOM05D005419 ORTHO05D007365 8.4e-120 434.1 281 70.1
Glyma.14G113800 Glycine max HOM05D005419 ORTHO05D007365 8.4e-120 434.1 281 70.1
FAN20G2331 Fragaria x ananassa HOM05D005419 ORTHO05D007365 1.1e-119 433.7 281 69.4
CSS0019044 Camellia sinensis var. sinensis HOM05D005419 ORTHO05D007365 1.4e-119 433.3 281 71.2
SalBow4G1212 Salvia bowleyana HOM05D005419 ORTHO05D007365 1.4e-119 433.3 281 70.1
Cpa.g.sc187.13 Carica papaya HOM05D005419 ORTHO05D007365 1.9e-119 433.0 281 70.5
Ciclev10009082m.g Citrus clementina HOM05D005419 ORTHO05D007365 2.5e-119 432.6 281 69.8
Gorai.010G116600 Gossypium raimondii HOM05D005419 ORTHO05D007365 2.5e-119 432.6 281 69.8
GSVIVG01035939001 Vitis vinifera HOM05D005419 ORTHO05D007365 2.5e-119 432.6 281 70.8
Gohir.D05G058700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 3.2e-119 432.2 281 70.5
Gorai.009G059800 Gossypium raimondii HOM05D005419 ORTHO05D007365 3.2e-119 432.2 281 70.5
Lj8A726G39 Lonicera japonica HOM05D005419 ORTHO05D007365 3.2e-119 432.2 281 70.5
FvH4_2g28610 Fragaria vesca HOM05D005419 ORTHO05D007365 4.2e-119 431.8 281 69.0
FAN24G2053 Fragaria x ananassa HOM05D005419 ORTHO05D007365 4.2e-119 431.8 281 69.0
Nn2g12192 Nelumbo nucifera HOM05D005419 ORTHO05D007365 4.2e-119 431.8 281 70.8
Gohir.A06G099500 Gossypium hirsutum HOM05D005419 ORTHO05D007365 5.5e-119 431.4 281 69.4
Gohir.D06G101700 Gossypium hirsutum HOM05D005419 ORTHO05D007365 5.5e-119 431.4 281 69.8
Lj5g0012746 Lotus japonicus HOM05D005419 ORTHO05D007365 5.5e-119 431.4 281 69.8
Nitab4.5_0014723g0010 Nicotiana tabacum HOM05D005419 ORTHO05D007365 5.5e-119 431.4 282 69.9
Os08g0299000 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D007365 5.5e-119 431.4 281 68.0
CANSAT25G3306 Cannabis sativa HOM05D005419 ORTHO05D007365 9.3e-119 430.6 281 69.8
Cc08_g00340 Coffea canephora HOM05D005419 ORTHO05D007365 1.2e-118 430.3 281 69.0
Eucgr.K02838 Eucalyptus grandis HOM05D005419 ORTHO05D007365 1.2e-118 430.3 285 68.1
Lalb_Chr23g0268401 Lupinus albus HOM05D005419 ORTHO05D007365 1.2e-118 430.3 281 69.8
RcHm_v2.0_Chr6g0297381 Rosa chinensis HOM05D005419 ORTHO05D007365 1.2e-118 430.3 281 69.0
Sopen08g010000 Solanum pennellii HOM05D005419 ORTHO05D007365 1.2e-118 430.3 282 69.5
Manes.16G125000 Manihot esculenta HOM05D005419 ORTHO05D007365 1.6e-118 429.9 281 68.0
Medtr1g012830 Medicago truncatula HOM05D005419 ORTHO05D007365 1.6e-118 429.9 281 68.7
Psat6g028000 Pisum sativum HOM05D005419 ORTHO05D007365 1.6e-118 429.9 281 69.0
TWI34G1484 Tripterygium wilfordii HOM05D005419 ORTHO05D007365 2.1e-118 429.5 281 68.7
Actinidia14096 Actinidia chinensis HOM05D005419 ORTHO05D007365 2.7e-118 429.1 276 69.9
ECA248G3461 Erigeron canadensis HOM05D005419 ORTHO05D007365 2.7e-118 429.1 281 69.4
HanXRQChr13g0387991 Helianthus annuus HOM05D005419 ORTHO05D007365 2.7e-118 429.1 282 68.8
Sp4g04430 Schrenkiella parvula HOM05D005419 ORTHO05D007365 2.7e-118 429.1 281 68.0
CANSAT54G2335 Cannabis sativa HOM05D005419 ORTHO05D007365 3.5e-118 428.7 282 68.8
PSO210G4598 Papaver somniferum HOM05D005419 ORTHO05D007365 3.5e-118 428.7 284 68.3
Migut.A00016 Erythranthe guttata HOM05D005419 ORTHO05D007365 4.6e-118 428.3 281 69.0
MD08G1152600 Malus domestica HOM05D005419 ORTHO05D007365 6.0e-118 427.9 281 69.4
MBI15_g25765_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 7.9e-118 427.6 281 70.5
TPR.G14021 Trifolium pratense HOM05D005419 ORTHO05D007365 7.9e-118 427.6 281 68.3
Aqoxy7G03594 Aquilegia oxysepala HOM05D005419 ORTHO05D007365 1.0e-117 427.2 281 69.8
Solyc08g029110.3 Solanum lycopersicum HOM05D005419 ORTHO05D007365 1.0e-117 427.2 282 69.9
THA.LOC104805589 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 1.0e-117 427.2 282 67.7
BcaB06g28051 Brassica carinata HOM05D005419 ORTHO05D007365 2.3e-117 426.0 281 67.6
BcaC02g08359 Brassica carinata HOM05D005419 ORTHO05D007365 2.3e-117 426.0 281 67.6
A04p19650 Brassica napus HOM05D005419 ORTHO05D007365 2.3e-117 426.0 281 67.6
BraA04t17556Z Brassica rapa HOM05D005419 ORTHO05D007365 2.3e-117 426.0 281 67.6
Duzib150G0083 Durio zibethinus HOM05D005419 ORTHO05D007365 2.3e-117 426.0 281 68.7
HPP92_000481 Vanilla planifolia HOM05D005419 ORTHO05D007365 3.9e-117 425.2 282 67.0
EL10Ac2g04167 Beta vulgaris HOM05D005419 ORTHO05D007365 5.1e-117 424.9 288 66.7
AUR62012434 Chenopodium quinoa HOM05D005419 ORTHO05D007365 5.1e-117 424.9 281 68.7
Haze_21481 Corylus avellana HOM05D005419 ORTHO05D007365 5.1e-117 424.9 312 63.5
BolC4t27063H Brassica oleracea HOM05D005419 ORTHO05D007365 6.7e-117 424.5 281 67.3
Thecc.09G020800 Theobroma cacao HOM05D005419 ORTHO05D007365 6.7e-117 424.5 283 68.6
Sc09g0010330 Simmondsia chinensis HOM05D005419 ORTHO05D007365 8.7e-117 424.1 285 67.7
Ca_13036_v3 Cicer arietinum L. HOM05D005419 ORTHO05D007365 1.1e-116 423.7 281 67.3
Zm00001eb362830 Zea mays HOM05D005419 ORTHO05D007365 1.1e-116 423.7 281 69.0
BcaB08g35172 Brassica carinata HOM05D005419 ORTHO05D007365 1.5e-116 423.3 281 67.6
C04p55260 Brassica napus HOM05D005419 ORTHO05D007365 1.5e-116 423.3 281 66.9
Potri.018G023700 Populus trichocarpa HOM05D005419 ORTHO05D007365 1.5e-116 423.3 281 68.3
Thhalv10000272m.g Eutrema salsugineum HOM05D005419 ORTHO05D007365 1.9e-116 422.9 281 66.9
AT2G25280 Arabidopsis thaliana HOM05D005419 ORTHO05D007365 2.5e-116 422.5 288 66.0
AUR62031558 Chenopodium quinoa HOM05D005419 ORTHO05D007365 3.3e-116 422.2 281 68.3
MSTRG.26021 Avicennia marina HOM05D005419 ORTHO05D007365 4.3e-116 421.8 288 67.4
Potri.006G258200 Populus trichocarpa HOM05D005419 ORTHO05D007365 4.3e-116 421.8 281 68.7
Aa31sc229G10 Aethionema arabicum HOM05D005419 ORTHO05D007365 7.4e-116 421.0 281 66.5
FAN27G2423 Fragaria x ananassa HOM05D005419 ORTHO05D007365 9.7e-116 420.6 281 68.3
DCAR_003104 Daucus carota HOM05D005419 ORTHO05D007365 2.8e-115 419.1 281 68.0
CDE03G0272 Ceratophyllum demersum HOM05D005419 ORTHO05D007365 3.7e-115 418.7 285 67.4
Nitab4.5_0007718g0040 Nicotiana tabacum HOM05D005419 ORTHO05D007365 3.7e-115 418.7 282 69.1
BcaC07g40875 Brassica carinata HOM05D005419 ORTHO05D007365 4.8e-115 418.3 285 65.6
unitig_32.g10881 Utricularia gibba HOM05D005419 ORTHO05D007365 8.2e-115 417.5 281 67.6
C08p38730 Brassica napus HOM05D005419 ORTHO05D007365 1.1e-114 417.2 281 66.2
BolC8t51443H Brassica oleracea HOM05D005419 ORTHO05D007365 1.1e-114 417.2 281 66.2
Carub.0004s0490 Capsella rubella HOM05D005419 ORTHO05D007365 1.1e-114 417.2 281 66.5
A09p55730 Brassica napus HOM05D005419 ORTHO05D007365 1.4e-114 416.8 281 66.2
BraA09t40974Z Brassica rapa HOM05D005419 ORTHO05D007365 1.4e-114 416.8 281 66.2
CBR_g59364 Chara braunii HOM05D005419 ORTHO05D007365 1.4e-114 416.8 287 66.9
AL4G16610 Arabidopsis lyrata HOM05D005419 ORTHO05D007365 4.1e-114 415.2 288 65.3
FAN15G2739 Fragaria x ananassa HOM05D005419 ORTHO05D007365 9.0e-114 414.1 271 69.0
Sed0006243 Sechium edule HOM05D005419 ORTHO05D007365 1.2e-113 413.7 281 65.8
SGA_v2.0_scaffold20G09092 Striga asiatica HOM05D005419 ORTHO05D007365 2.6e-113 412.5 281 68.0
ATR0767G069 Amborella trichopoda HOM05D005419 ORTHO05D007365 2.9e-112 409.1 268 70.9
Prupe.1G484800 Prunus persica HOM05D005419 ORTHO05D007365 2.5e-111 406.0 268 69.8
vmacro05161 Vaccinium macrocarpon HOM05D005419 ORTHO05D007365 2.5e-111 406.0 269 69.5
Sabra18G0026400 Salix brachista HOM05D005419 ORTHO05D007365 7.2e-111 404.4 273 67.4
Lsat_1_v5_gn_5_157921 Lactuca sativa HOM05D005419 ORTHO05D007365 1.6e-110 403.3 282 67.0
CARHR116260 Cardamine hirsuta HOM05D005419 ORTHO05D007365 5.7e-108 394.8 283 63.3
SEGI_34683 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 1.7e-107 393.3 275 66.9
ClCG08G013470 Citrullus lanatus HOM05D005419 ORTHO05D007365 6.3e-107 391.3 306 61.8
Duzib168G1909 Durio zibethinus HOM05D005419 ORTHO05D007365 3.1e-106 389.0 281 64.8
COL.COLO4_18897 Corchorus olitorius HOM05D005419 ORTHO05D007365 3.4e-105 385.6 247 70.0
Hund04483 Selenicereus undatus HOM05D005419 ORTHO05D007365 7.7e-105 384.4 307 58.0
Rhsim12G0212900 Rhododendron simsii HOM05D005419 ORTHO05D007365 2.2e-104 382.9 282 63.8
MBI15_g36826_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D007365 5.5e-103 378.3 269 66.5
Dinv18189 Davidia involucrata HOM05D005419 ORTHO05D007365 2.8e-99 365.9 281 61.9
SEGI_02513 Sequoiadendron giganteum HOM05D005419 ORTHO05D007365 2.3e-93 346.3 219 73.1
Cre02.g096200 Chlamydomonas reinhardtii HOM05D005419 ORTHO05D007365 5.0e-88 328.6 287 53.7
MCO07G667 Micromonas commoda HOM05D005419 ORTHO05D007365 3.0e-85 319.3 295 55.3
PRCOL_00000176 Prasinoderma coloniale HOM05D005419 ORTHO05D007365 8.3e-83 311.2 297 54.2
AagrBONN_evm.TU.Sc2ySwM_368.1912 Anthoceros agrestis HOM05D005419 ORTHO05D007365 2.4e-82 309.7 191 73.3
THA.LOC104815144 Tarenaya hassleriana HOM05D005419 ORTHO05D007365 5.2e-77 292.0 195 69.7
Rhsim07G0160700 Rhododendron simsii HOM05D005419 ORTHO05D007365 1.1e-74 284.3 304 49.7
CAN.G75.9 Capsicum annuum HOM05D005419 ORTHO05D007365 4.5e-73 278.9 186 71.0
Haze_26290 Corylus avellana HOM05D005419 ORTHO05D007365 8.6e-72 274.6 289 46.4
Oeu012280.1 Olea europaea HOM05D005419 ORTHO05D007365 1.6e-70 270.4 179 68.2
Sabra06G0201900 Salix brachista HOM05D005419 ORTHO05D007365 1.2e-68 264.2 166 71.7
Cfa026845 Carpinus fangiana HOM05D005419 ORTHO05D007365 1.1e-58 231.1 308 42.5
Lalb_Chr11g0063641 Lupinus albus HOM05D005419 ORTHO05D007365 1.6e-46 190.7 164 56.7
FAN09G2129 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.4e-44 182.6 215 45.6
FAN28G2535 Fragaria x ananassa HOM05D005419 ORTHO05D019206 4.4e-44 182.6 214 45.8
FAN01G2683 Fragaria x ananassa HOM05D005419 ORTHO05D019206 8.4e-35 151.8 94 72.3
FAN02G2313 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.4e-34 151.0 95 70.5
Oeu012278.1 Olea europaea HOM05D005419 ORTHO05D007365 1.9e-34 150.6 102 65.7
FAN21G3387 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.7e-32 144.1 89 71.9
Os05g0310750 Oryza sativa ssp. japonica HOM05D005419 ORTHO05D019206 6.6e-24 115.5 70 70.0
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 3.2e-18 96.7 184 33.7
FAN16G2296 Fragaria x ananassa HOM05D005419 ORTHO05D019206 1.5e-15 87.8 89 52.8
MBI12_g19406_MAGBIO Magnolia biondii HOM05D005419 ORTHO05D242193 5.1e-08 62.8 49 55.1


User provided reference genes

Program Settings