Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 2.0e-26 121.7 64 100.0
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.2e-18 95.9 63 81.0
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 4.0e-14 80.9 63 65.1
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 8.9e-14 79.7 63 63.5
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 1.2e-13 79.3 63 65.1
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 2.0e-13 78.6 62 64.5
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 2.6e-13 78.2 63 63.5
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 4.4e-13 77.4 63 61.9
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 5.8e-13 77.0 63 61.9
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 5.8e-13 77.0 63 61.9
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 5.8e-13 77.0 63 61.9
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 7.5e-13 76.6 63 63.5
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 7.5e-13 76.6 63 63.5
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 7.5e-13 76.6 63 63.5
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 7.5e-13 76.6 63 63.5
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 9.8e-13 76.3 63 61.9
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 9.8e-13 76.3 63 60.3
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 9.8e-13 76.3 63 61.9
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.3e-12 75.9 63 61.9
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.3e-12 75.9 63 61.9
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 1.3e-12 75.9 62 62.9
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.3e-12 75.9 63 61.9
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 1.3e-12 75.9 63 61.9
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.7e-12 75.5 63 60.3
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 1.7e-12 75.5 63 61.9
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 1.7e-12 75.5 63 60.3
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 1.7e-12 75.5 63 60.3
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 2.2e-12 75.1 63 60.3
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 2.2e-12 75.1 63 60.3
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 2.2e-12 75.1 63 61.9
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 2.2e-12 75.1 63 60.3
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 2.2e-12 75.1 63 61.9
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 2.9e-12 74.7 63 61.9
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 2.9e-12 74.7 63 60.3
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 2.9e-12 74.7 63 60.3
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 2.9e-12 74.7 63 60.3
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 2.9e-12 74.7 63 60.3
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 2.9e-12 74.7 63 60.3
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 2.9e-12 74.7 62 61.3
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 2.9e-12 74.7 63 60.3
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 2.9e-12 74.7 63 60.3
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 2.9e-12 74.7 63 60.3
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 2.9e-12 74.7 63 60.3
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 2.9e-12 74.7 63 60.3
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 63.5
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 60.3
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 60.3
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 60.3
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 58.7
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 60.3
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 60.3
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 58.7
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 61.9
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 60.3
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 60.3
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 60.3
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 3.7e-12 74.3 63 60.3
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 4.9e-12 73.9 63 60.3
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 4.9e-12 73.9 63 58.7
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 4.9e-12 73.9 63 60.3
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 4.9e-12 73.9 63 60.3
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 4.9e-12 73.9 63 60.3
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 4.9e-12 73.9 63 60.3
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 4.9e-12 73.9 63 60.3
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 6.4e-12 73.6 63 58.7
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 6.4e-12 73.6 63 60.3
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 8.3e-12 73.2 63 58.7
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 8.3e-12 73.2 63 58.7
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 8.3e-12 73.2 63 58.7
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 8.3e-12 73.2 63 60.3
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 8.3e-12 73.2 63 60.3
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 1.1e-11 72.8 63 55.6
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 1.1e-11 72.8 63 58.7
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.1e-11 72.8 63 58.7
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.1e-11 72.8 63 58.7
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.1e-11 72.8 63 58.7
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 1.1e-11 72.8 63 58.7
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.1e-11 72.8 63 60.3
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.4e-11 72.4 63 58.7
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 1.4e-11 72.4 63 58.7
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 1.4e-11 72.4 63 60.3
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 1.4e-11 72.4 63 60.3
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 1.9e-11 72.0 63 55.6
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 1.9e-11 72.0 63 55.6
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 1.9e-11 72.0 63 58.7
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 1.9e-11 72.0 63 58.7
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 2.4e-11 71.6 63 58.7
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 2.4e-11 71.6 63 58.7
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 3.2e-11 71.2 63 55.6
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 4.1e-11 70.9 63 55.6
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 4.1e-11 70.9 63 55.6
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 4.1e-11 70.9 63 55.6
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 4.1e-11 70.9 63 55.6
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 4.1e-11 70.9 63 55.6
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 4.1e-11 70.9 63 55.6
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 4.1e-11 70.9 63 55.6
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 4.1e-11 70.9 63 55.6
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 4.1e-11 70.9 63 63.5
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 4.1e-11 70.9 63 58.7
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 4.1e-11 70.9 63 58.7
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 4.1e-11 70.9 63 55.6
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 5.4e-11 70.5 63 58.7
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 5.4e-11 70.5 63 55.6
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 5.4e-11 70.5 63 55.6
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 5.4e-11 70.5 59 64.4
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 5.4e-11 70.5 63 58.7
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 5.4e-11 70.5 63 58.7
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 5.4e-11 70.5 63 58.7
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 5.4e-11 70.5 63 58.7
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 5.4e-11 70.5 63 58.7
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 5.4e-11 70.5 63 58.7
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 5.4e-11 70.5 63 58.7
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 7.0e-11 70.1 51 68.6
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 7.0e-11 70.1 63 57.1
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 7.0e-11 70.1 63 57.1
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 9.2e-11 69.7 63 55.6
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 1.2e-10 69.3 63 57.1
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.2e-10 69.3 63 57.1
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.6e-10 68.9 60 56.7
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 1.6e-10 68.9 60 58.3
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 2.7e-10 68.2 63 58.7
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 3.5e-10 67.8 63 57.1
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 4.6e-10 67.4 63 54.0
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 4.6e-10 67.4 63 54.0
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 4.6e-10 67.4 70 54.3
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 6.0e-10 67.0 58 56.9
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 7.8e-10 66.6 51 68.6
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.0e-09 66.2 63 55.6
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 2.3e-09 65.1 59 54.2
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 5.0e-09 63.9 63 55.6
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 8.6e-09 63.2 65 52.3
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 1.1e-08 62.8 60 53.3
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 8.1e-07 56.6 61 49.2


User provided reference genes

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