Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_16830 Physcomitrium patens HOM05D006711 ORTHO05D008104 1.1e-41 172.9 88 100.0
Pp3c3_16770 Physcomitrium patens HOM05D006711 ORTHO05D008104 1.0e-20 103.2 69 73.9
BcaC07g39289 Brassica carinata HOM05D006711 ORTHO05D008104 1.0e-15 86.7 72 61.1
A06p19610 Brassica napus HOM05D006711 ORTHO05D008104 1.0e-15 86.7 72 61.1
C08p22960 Brassica napus HOM05D006711 ORTHO05D008104 1.0e-15 86.7 72 61.1
BolC8t49933H Brassica oleracea HOM05D006711 ORTHO05D008104 1.0e-15 86.7 72 61.1
BraA06t25041Z Brassica rapa HOM05D006711 ORTHO05D008104 1.0e-15 86.7 72 61.1
CsaV3_1G008300 Cucumis sativus L. HOM05D006711 ORTHO05D008104 1.7e-15 85.9 72 59.7
Thhalv10010870m.g Eutrema salsugineum HOM05D006711 ORTHO05D008104 1.7e-15 85.9 72 61.1
BcaB01g00848 Brassica carinata HOM05D006711 ORTHO05D008104 2.9e-15 85.1 72 59.7
Aa31LG4G16690 Aethionema arabicum HOM05D006711 ORTHO05D008104 3.8e-15 84.7 72 59.7
AL5G27360 Arabidopsis lyrata HOM05D006711 ORTHO05D008104 3.8e-15 84.7 72 59.7
CARHR156770 Cardamine hirsuta HOM05D006711 ORTHO05D008104 3.8e-15 84.7 72 59.7
Sp5g13950 Schrenkiella parvula HOM05D006711 ORTHO05D008104 3.8e-15 84.7 72 59.7
ClCG01G014050 Citrullus lanatus HOM05D006711 ORTHO05D008104 5.0e-15 84.3 72 58.3
TWI15G0492 Tripterygium wilfordii HOM05D006711 ORTHO05D008104 8.5e-15 83.6 76 55.3
Cfa019085 Carpinus fangiana HOM05D006711 ORTHO05D008104 1.1e-14 83.2 74 58.1
PSO478G1559 Papaver somniferum HOM05D006711 ORTHO05D008104 1.1e-14 83.2 69 60.9
MELO3C002246.2 Cucumis melo HOM05D006711 ORTHO05D008104 1.4e-14 82.8 72 56.9
Mapoly0124s0028 Marchantia polymorpha HOM05D006711 ORTHO05D008104 1.4e-14 82.8 68 63.2
Aqoxy3G00948 Aquilegia oxysepala HOM05D006711 ORTHO05D008104 2.5e-14 82.0 77 54.5
THA.LOC104821460 Tarenaya hassleriana HOM05D006711 ORTHO05D008104 2.5e-14 82.0 72 56.9
Eucgr.K02867 Eucalyptus grandis HOM05D006711 ORTHO05D008104 3.2e-14 81.6 72 56.9
AagrBONN_evm.TU.Sc2ySwM_368.1224 Anthoceros agrestis HOM05D006711 ORTHO05D008104 4.2e-14 81.3 65 67.7
Duzib068G0631 Durio zibethinus HOM05D006711 ORTHO05D008104 4.2e-14 81.3 71 57.7
Manes.14G068400 Manihot esculenta HOM05D006711 ORTHO05D008104 4.2e-14 81.3 72 56.9
Oeu059193.1 Olea europaea HOM05D006711 ORTHO05D008104 7.2e-14 80.5 69 58.0
ATR1149G012 Amborella trichopoda HOM05D006711 ORTHO05D008104 9.4e-14 80.1 71 60.6
PSO017G6527 Papaver somniferum HOM05D006711 ORTHO05D008104 9.4e-14 80.1 69 58.0
Sabra12G0055800 Salix brachista HOM05D006711 ORTHO05D008104 9.4e-14 80.1 72 56.9
SalBow6G5258 Salvia bowleyana HOM05D006711 ORTHO05D008104 9.4e-14 80.1 69 58.0
Aa31LG11G810 Aethionema arabicum HOM05D006711 ORTHO05D008104 1.2e-13 79.7 72 55.6
COL.COLO4_24770 Corchorus olitorius HOM05D006711 ORTHO05D008104 1.2e-13 79.7 71 56.3
Duzib084G0075 Durio zibethinus HOM05D006711 ORTHO05D008104 1.2e-13 79.7 71 57.7
Gohir.A12G275900 Gossypium hirsutum HOM05D006711 ORTHO05D008104 1.2e-13 79.7 70 58.6
Gohir.D12G276600 Gossypium hirsutum HOM05D006711 ORTHO05D008104 1.2e-13 79.7 70 58.6
Gorai.008G297100 Gossypium raimondii HOM05D006711 ORTHO05D008104 1.2e-13 79.7 70 58.6
Potri.015G073300 Populus trichocarpa HOM05D006711 ORTHO05D008104 1.2e-13 79.7 86 47.7
EL10Ac5g10797 Beta vulgaris HOM05D006711 ORTHO05D008104 1.6e-13 79.3 68 58.8
MBI15_g24174_MAGBIO Magnolia biondii HOM05D006711 ORTHO05D008104 1.6e-13 79.3 68 58.8
PGR044G2080 Punica granatum HOM05D006711 ORTHO05D008104 1.6e-13 79.3 72 56.9
AUR62031000 Chenopodium quinoa HOM05D006711 ORTHO05D008104 2.1e-13 79.0 71 57.7
Ciclev10023110m.g Citrus clementina HOM05D006711 ORTHO05D008104 2.1e-13 79.0 71 56.3
Sed0004980 Sechium edule HOM05D006711 ORTHO05D008104 2.1e-13 79.0 72 55.6
Cpa.g.sc134.10 Carica papaya HOM05D006711 ORTHO05D008104 2.7e-13 78.6 71 54.9
DCAR_011220 Daucus carota HOM05D006711 ORTHO05D008104 2.7e-13 78.6 74 54.1
FvH4_5g05020 Fragaria vesca HOM05D006711 ORTHO05D008104 2.7e-13 78.6 71 56.3
FAN04G0211 Fragaria x ananassa HOM05D006711 ORTHO05D008104 2.7e-13 78.6 71 56.3
FAN08G2471 Fragaria x ananassa HOM05D006711 ORTHO05D008104 2.7e-13 78.6 71 56.3
FAN13G1278 Fragaria x ananassa HOM05D006711 ORTHO05D008104 2.7e-13 78.6 71 56.3
FAN18G1479 Fragaria x ananassa HOM05D006711 ORTHO05D008104 2.7e-13 78.6 71 56.3
FAN18G2156 Fragaria x ananassa HOM05D006711 ORTHO05D008104 2.7e-13 78.6 71 56.3
Sc04g0001970 Simmondsia chinensis HOM05D006711 ORTHO05D008104 2.7e-13 78.6 69 59.4
CANSAT11G1423 Cannabis sativa HOM05D006711 ORTHO05D008104 3.6e-13 78.2 72 54.2
Oeu047317.1 Olea europaea HOM05D006711 ORTHO05D008104 3.6e-13 78.2 69 55.1
Thecc.03G007500 Theobroma cacao HOM05D006711 ORTHO05D008104 3.6e-13 78.2 71 56.3
Sabra15G0097500 Salix brachista HOM05D006711 ORTHO05D008104 4.6e-13 77.8 72 54.2
Migut.N03365 Erythranthe guttata HOM05D006711 ORTHO05D008104 6.1e-13 77.4 69 55.1
GSVIVG01007800001 Vitis vinifera HOM05D006711 ORTHO05D008104 6.1e-13 77.4 68 58.8
Ca_21901_v3 Cicer arietinum L. HOM05D006711 ORTHO05D008104 7.9e-13 77.0 70 57.1
Cc07_g02450 Coffea canephora HOM05D006711 ORTHO05D008104 7.9e-13 77.0 69 56.5
Peaxi162Scf00429g00118 Petunia axillaris HOM05D006711 ORTHO05D008104 7.9e-13 77.0 69 55.1
Potri.012G078000 Populus trichocarpa HOM05D006711 ORTHO05D008104 7.9e-13 77.0 72 54.2
THA.LOC104798980 Tarenaya hassleriana HOM05D000086 ORTHO05D008104 7.9e-13 77.0 72 54.2
Carub.0005s1414 Capsella rubella HOM05D000086 ORTHO05D008104 1.0e-12 76.6 61 63.9
Lj4g0001750 Lotus japonicus HOM05D006711 ORTHO05D008104 1.0e-12 76.6 71 54.9
Medtr4g106700 Medicago truncatula HOM05D006711 ORTHO05D008104 1.0e-12 76.6 70 57.1
Atru.chr9.2428 Acer truncatum HOM05D006711 ORTHO05D008104 1.8e-12 75.9 71 53.5
GSVIVG01032507001 Vitis vinifera HOM05D006711 ORTHO05D008104 1.8e-12 75.9 69 55.1
Actinidia33966 Actinidia chinensis HOM05D006711 ORTHO05D008104 2.3e-12 75.5 69 52.2
Phvul.003G198200 Phaseolus vulgaris HOM05D006711 ORTHO05D008104 2.3e-12 75.5 73 57.5
TPR.G37552 Trifolium pratense HOM05D006711 ORTHO05D008104 2.3e-12 75.5 78 51.3
arahy.Tifrunner.gnm1.ann1.5NY27E Arachis hypogaea HOM05D006711 ORTHO05D008104 3.0e-12 75.1 69 56.5
Psat4g057240 Pisum sativum HOM05D006711 ORTHO05D008104 3.0e-12 75.1 70 54.3
vmacro05808 Vaccinium macrocarpon HOM05D006711 ORTHO05D008104 3.0e-12 75.1 69 55.1
Ah.10g035450 Amaranthus hybridus HOM05D006711 ORTHO05D008104 3.9e-12 74.7 68 57.4
PSO063G1690 Papaver somniferum HOM05D006711 ORTHO05D008104 3.9e-12 74.7 71 50.7
PSO832G1815 Papaver somniferum HOM05D006711 ORTHO05D008104 3.9e-12 74.7 71 50.7
Hma1.2p1_0697F.1_g204840 Hydrangea macrophylla HOM05D006711 ORTHO05D008104 5.1e-12 74.3 69 52.2
Nitab4.5_0002792g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 6.7e-12 73.9 69 52.2
Hund09419 Selenicereus undatus HOM05D006711 ORTHO05D008104 6.7e-12 73.9 70 55.7
SEGI_30617 Sequoiadendron giganteum HOM05D006711 ORTHO05D008104 6.7e-12 73.9 72 51.4
CDE10G0118 Ceratophyllum demersum HOM05D001322 ORTHO05D001301 8.8e-12 73.6 66 54.5
CBR_g49624 Chara braunii HOM05D006711 ORTHO05D008104 8.8e-12 73.6 66 60.6
AUR62008246 Chenopodium quinoa HOM05D001451 ORTHO05D008104 8.8e-12 73.6 60 63.3
Glyma.05G035600 Glycine max HOM05D006711 ORTHO05D008104 8.8e-12 73.6 60 63.3
CiPaw.12G024900 Carya illinoinensis HOM05D006711 ORTHO05D008104 1.1e-11 73.2 83 50.6
CDE10G0426 Ceratophyllum demersum HOM05D006711 ORTHO05D008104 2.0e-11 72.4 66 53.0
Nitab4.5_0004762g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 2.0e-11 72.4 69 50.7
MD06G1177900 Malus domestica HOM05D006711 ORTHO05D008104 2.5e-11 72.0 71 52.1
MD14G1184500 Malus domestica HOM05D006711 ORTHO05D008104 2.5e-11 72.0 71 52.1
CAN.G742.33 Capsicum annuum HOM05D006711 ORTHO05D008104 4.3e-11 71.2 69 52.2
Lalb_Chr12g0201501 Lupinus albus HOM05D006711 ORTHO05D008104 4.3e-11 71.2 60 60.0
CiPaw.11G029900 Carya illinoinensis HOM05D006711 ORTHO05D008104 7.4e-11 70.5 61 59.0
Os09g0375900 Oryza sativa ssp. japonica HOM05D006711 ORTHO05D008104 7.4e-11 70.5 68 58.8
Prupe.5G177100 Prunus persica HOM05D006711 ORTHO05D008104 7.4e-11 70.5 71 50.7
Lsat_1_v5_gn_4_181601 Lactuca sativa HOM05D006711 ORTHO05D008104 9.7e-11 70.1 65 55.4
Sopen11g029530 Solanum pennellii HOM05D006711 ORTHO05D008104 9.7e-11 70.1 69 50.7
HanXRQChr09g0265981 Helianthus annuus HOM05D006711 ORTHO05D008104 2.2e-10 68.9 69 50.7
HPP92_010905 Vanilla planifolia HOM05D006711 ORTHO05D008104 2.2e-10 68.9 68 52.9
HPP92_010907 Vanilla planifolia HOM05D006711 ORTHO05D008104 2.2e-10 68.9 68 52.9
QL10p013547 Quercus lobata HOM05D006711 ORTHO05D008104 3.7e-10 68.2 53 66.0
Eucgr.J02179 Eucalyptus grandis HOM05D006711 ORTHO05D008104 4.8e-10 67.8 75 50.7
Oeu006591.3 Olea europaea HOM05D006711 ORTHO05D008104 6.3e-10 67.4 50 70.0
Zm00001eb311470 Zea mays HOM05D006711 ORTHO05D008104 6.3e-10 67.4 57 61.4
Haze_07479 Corylus avellana HOM05D006711 ORTHO05D008104 1.1e-09 66.6 53 66.0
HanXRQChr12g0385511 Helianthus annuus HOM05D006711 ORTHO05D008104 1.4e-09 66.2 69 52.2
Sed0016611 Sechium edule HOM05D006711 ORTHO05D008104 2.4e-09 65.5 72 48.6
ATR0820G148 Amborella trichopoda HOM05D006711 ORTHO05D008104 3.1e-09 65.1 72 48.6
RcHm_v2.0_Chr7g0194021 Rosa chinensis HOM05D006711 ORTHO05D008104 6.9e-09 63.9 53 62.3
Rhsim10G0024900 Rhododendron simsii HOM05D006711 ORTHO05D008104 1.5e-08 62.8 54 63.0
PGSC0003DMG400003004 Solanum tuberosum HOM05D006711 ORTHO05D008104 3.4e-08 61.6 51 58.8
CSS0024346 Camellia sinensis var. sinensis HOM05D006711 ORTHO05D008104 7.7e-08 60.5 49 63.3
Rhsim08G0056600 Rhododendron simsii HOM05D000086 ORTHO05D000983 1.0e-07 60.1 55 52.7
unitig_46.g17997 Utricularia gibba HOM05D006711 ORTHO05D008104 1.0e-07 60.1 49 63.3
Nn4g22854 Nelumbo nucifera HOM05D006711 ORTHO05D008104 2.2e-07 58.9 54 51.9
Rhsim10G0024700 Rhododendron simsii HOM05D006711 ORTHO05D008104 2.2e-07 58.9 50 62.0
ATR0661G003 Amborella trichopoda HOM05D006711 ORTHO05D008104 5.0e-07 57.8 68 48.5
PRCOL_00004863 Prasinoderma coloniale HOM05D006711 ORTHO05D008104 6.5e-07 57.4 68 47.1
TAR622G0690 Trochodendron aralioides HOM05D001464 ORTHO05D002836 4.2e-06 54.7 54 50.0


User provided reference genes

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