Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_16330 Physcomitrium patens HOM05D001544 ORTHO05D005712 7.6e-106 387.1 188 100.0
ECA238G2610 Erigeron canadensis HOM05D002906 ORTHO05D003211 6.4e-28 128.3 169 40.8
Mapoly0074s0044 Marchantia polymorpha HOM05D001544 ORTHO05D005712 1.1e-27 127.5 188 42.6
TWI75G0115 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 5.4e-27 125.2 181 43.1
Eucgr.G01724 Eucalyptus grandis HOM05D001544 ORTHO05D005712 6.0e-26 121.7 174 42.5
Nn5g29207 Nelumbo nucifera HOM05D001544 ORTHO05D002732 5.1e-25 118.6 169 43.2
HanXRQChr14g0441601 Helianthus annuus HOM05D001544 ORTHO05D005712 8.6e-25 117.9 167 40.1
HanXRQChr13g0414781 Helianthus annuus HOM05D001544 ORTHO05D005712 1.1e-24 117.5 167 39.5
Hma1.2p1_0266F.1_g106940 Hydrangea macrophylla HOM05D001544 ORTHO05D005712 1.1e-24 117.5 169 42.0
Sc03g0003410 Simmondsia chinensis HOM05D001544 ORTHO05D005712 1.5e-24 117.1 187 39.6
PGR042G1893 Punica granatum HOM05D001544 ORTHO05D005712 1.9e-24 116.7 180 39.4
Aqoxy5G01497 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 5.6e-24 115.2 167 38.9
TAR625G1395 Trochodendron aralioides HOM05D001544 ORTHO05D005712 2.1e-23 113.2 178 41.0
TWI79G0125 Tripterygium wilfordii HOM05D001544 ORTHO05D005712 4.7e-23 112.1 168 41.7
CiPaw.06G128900 Carya illinoinensis HOM05D001544 ORTHO05D005712 1.4e-22 110.5 186 35.5
CsaV3_2G015260 Cucumis sativus L. HOM05D001544 ORTHO05D005712 1.8e-22 110.2 172 39.5
Lsat_1_v5_gn_2_78361 Lactuca sativa HOM05D001544 ORTHO05D005712 1.8e-22 110.2 172 37.8
Pp3c3_3130 Physcomitrium patens HOM05D001544 ORTHO05D005712 1.8e-22 110.2 220 33.2
Dinv40055 Davidia involucrata HOM05D001544 ORTHO05D005712 2.4e-22 109.8 170 40.0
SEGI_21342 Sequoiadendron giganteum HOM05D001544 ORTHO05D005712 2.4e-22 109.8 176 37.5
MELO3C023351.2 Cucumis melo HOM05D001544 ORTHO05D005712 4.0e-22 109.0 172 39.0
RcHm_v2.0_Chr6g0267511 Rosa chinensis HOM05D001544 ORTHO05D005712 4.0e-22 109.0 170 41.2
Sed0017058 Sechium edule HOM05D001544 ORTHO05D005712 4.0e-22 109.0 182 38.5
Gohir.A03G198800 Gossypium hirsutum HOM05D001544 ORTHO05D005712 6.9e-22 108.2 175 38.9
Gohir.D02G220200 Gossypium hirsutum HOM05D001544 ORTHO05D005712 1.2e-21 107.5 173 38.2
Gorai.005G248100 Gossypium raimondii HOM05D001544 ORTHO05D005712 1.2e-21 107.5 173 38.2
QL11p046076 Quercus lobata HOM05D001544 ORTHO05D005712 1.2e-21 107.5 170 39.4
Hund14027 Selenicereus undatus HOM05D001544 ORTHO05D005712 1.2e-21 107.5 194 36.6
MSTRG.23282 Avicennia marina HOM05D001544 ORTHO05D005712 1.5e-21 107.1 195 34.9
CANSAT11G1780 Cannabis sativa HOM05D001544 ORTHO05D005712 3.4e-21 105.9 178 36.5
Lalb_Chr01g0002161 Lupinus albus HOM05D001544 ORTHO05D005712 3.4e-21 105.9 173 36.4
TPR.G34176 Trifolium pratense HOM05D001544 ORTHO05D005712 3.4e-21 105.9 169 36.1
FvH4_2g10310 Fragaria vesca HOM05D001544 ORTHO05D005712 5.8e-21 105.1 195 36.9
Pp3c26_11470 Physcomitrium patens HOM05D001544 ORTHO05D005712 5.8e-21 105.1 218 33.5
Prupe.8G085800 Prunus persica HOM05D001544 ORTHO05D005712 7.6e-21 104.8 170 37.1
Thecc.02G076200 Theobroma cacao HOM05D001544 ORTHO05D005712 7.6e-21 104.8 188 35.1
DCAR_025988 Daucus carota HOM05D001544 ORTHO05D005712 9.9e-21 104.4 174 36.2
MD10G1064100 Malus domestica HOM05D001544 ORTHO05D005712 1.3e-20 104.0 172 37.8
PSO210G7387 Papaver somniferum HOM05D001544 ORTHO05D005712 1.7e-20 103.6 171 36.3
Ciclev10029261m.g Citrus clementina HOM05D001544 ORTHO05D005712 2.2e-20 103.2 193 31.1
Psat7g226160 Pisum sativum HOM05D001544 ORTHO05D005712 2.2e-20 103.2 172 34.9
CiPaw.07G055800 Carya illinoinensis HOM05D001544 ORTHO05D005712 2.9e-20 102.8 174 37.4
Duzib132G0442 Durio zibethinus HOM05D001544 ORTHO05D005712 2.9e-20 102.8 166 38.6
Lj3g0003276 Lotus japonicus HOM05D001544 ORTHO05D005712 2.9e-20 102.8 177 35.0
Nitab4.5_0010830g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 2.9e-20 102.8 183 35.5
FAN15G2093 Fragaria x ananassa HOM05D001544 ORTHO05D005712 3.8e-20 102.4 194 35.1
Cfa005097 Carpinus fangiana HOM05D001544 ORTHO05D005712 6.4e-20 101.7 186 32.8
Rhsim10G0214300 Rhododendron simsii HOM05D001544 ORTHO05D005712 6.4e-20 101.7 176 34.7
Medtr4g032740 Medicago truncatula HOM05D001544 ORTHO05D005712 8.4e-20 101.3 174 33.3
AagrBONN_evm.TU.Sc2ySwM_362.490 Anthoceros agrestis HOM05D001544 ORTHO05D005712 1.1e-19 100.9 128 46.1
SGA_v2.0_scaffold51G18782 Striga asiatica HOM05D001544 ORTHO05D005712 1.1e-19 100.9 175 35.4
Nitab4.5_0000753g0030 Nicotiana tabacum HOM05D001544 ORTHO05D005712 1.4e-19 100.5 169 37.3
GSVIVG01024183001 Vitis vinifera HOM05D001544 ORTHO05D005712 1.4e-19 100.5 190 35.3
QL06p034007 Quercus lobata HOM05D001544 ORTHO05D005712 1.9e-19 100.1 181 33.7
Atru.chr5.3135 Acer truncatum HOM05D001544 ORTHO05D005712 4.2e-19 99.0 183 33.9
CSS0013177 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 4.2e-19 99.0 164 36.6
FAN20G3124 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.2e-19 99.0 202 36.6
Sed0002010 Sechium edule HOM05D001544 ORTHO05D005712 4.2e-19 99.0 175 34.3
Solyc03g033650.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 4.2e-19 99.0 165 34.5
Os06g0713900 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 7.1e-19 98.2 166 34.9
Sopen03g006440 Solanum pennellii HOM05D001544 ORTHO05D005712 9.3e-19 97.8 165 33.9
Phvul.011G039500 Phaseolus vulgaris HOM05D001544 ORTHO05D005712 1.6e-18 97.1 170 35.9
ClCG11G003920 Citrullus lanatus HOM05D001544 ORTHO05D005712 2.1e-18 96.7 173 37.6
arahy.Tifrunner.gnm1.ann1.3WL649 Arachis hypogaea HOM05D001544 ORTHO05D005712 2.7e-18 96.3 184 34.2
CSS0007563 Camellia sinensis var. sinensis HOM05D001544 ORTHO05D005712 3.5e-18 95.9 155 38.1
Manes.01G142600 Manihot esculenta HOM05D001544 ORTHO05D005712 4.6e-18 95.5 172 37.2
Manes.02G100900 Manihot esculenta HOM05D001544 ORTHO05D005712 4.6e-18 95.5 191 33.5
SalBow8G0407 Salvia bowleyana HOM05D001544 ORTHO05D005712 4.6e-18 95.5 180 34.4
SGA_v2.0_scaffold2G01246 Striga asiatica HOM05D001544 ORTHO05D005712 4.6e-18 95.5 215 30.2
Glyma.11G111600 Glycine max HOM05D001544 ORTHO05D005712 6.0e-18 95.1 170 35.9
Potri.005G117400 Populus trichocarpa HOM05D001544 ORTHO05D005712 7.8e-18 94.7 178 37.6
PGSC0003DMG401022539 Solanum tuberosum HOM05D001544 ORTHO05D005712 1.0e-17 94.4 168 33.3
Dinv42006 Davidia involucrata HOM05D001544 ORTHO05D002732 1.7e-17 93.6 192 32.3
FAN24G0484 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.3e-17 93.2 222 32.9
Dinv23461 Davidia involucrata HOM05D001544 ORTHO05D005712 3.0e-17 92.8 141 38.3
MD02G1135800 Malus domestica HOM05D001544 ORTHO05D005712 3.0e-17 92.8 171 31.6
Zm00001eb227920 Zea mays HOM05D001544 ORTHO05D005712 5.1e-17 92.0 174 31.6
Oeu021945.1 Olea europaea HOM05D001544 ORTHO05D005712 8.7e-17 91.3 168 32.7
A03p48120 Brassica napus HOM05D001544 ORTHO05D005712 1.1e-16 90.9 191 33.0
BraA03t13919Z Brassica rapa HOM05D001544 ORTHO05D005712 1.1e-16 90.9 191 33.0
Migut.L00036 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.9e-16 90.1 173 33.5
Prupe.7G164800 Prunus persica HOM05D001544 ORTHO05D005712 1.9e-16 90.1 198 30.8
Sp5g11110 Schrenkiella parvula HOM05D001544 ORTHO05D005712 1.9e-16 90.1 207 33.8
BcaC06g33056 Brassica carinata HOM05D001544 ORTHO05D005712 2.5e-16 89.7 191 32.5
C07p46160 Brassica napus HOM05D001544 ORTHO05D005712 2.5e-16 89.7 191 32.5
BolC7t45132H Brassica oleracea HOM05D001544 ORTHO05D005712 2.5e-16 89.7 191 32.5
Aqoxy6G02390 Aquilegia oxysepala HOM05D001544 ORTHO05D005712 3.3e-16 89.4 166 31.3
Lj3g0002354 Lotus japonicus HOM05D001544 ORTHO05D005712 3.3e-16 89.4 172 33.1
Glyma.01G006900 Glycine max HOM05D001544 ORTHO05D005712 4.3e-16 89.0 170 34.1
Lj4A214G24 Lonicera japonica HOM05D001544 ORTHO05D005712 7.3e-16 88.2 98 44.9
SMO004G0024 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 7.3e-16 88.2 190 33.2
THA.LOC104821318 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 7.3e-16 88.2 177 33.9
AT3G51100 Arabidopsis thaliana HOM05D001544 ORTHO05D005712 9.6e-16 87.8 200 34.0
Potri.007G016200 Populus trichocarpa HOM05D001544 ORTHO05D005712 9.6e-16 87.8 178 33.1
SMO361G0705 Selaginella moellendorffii HOM05D001544 ORTHO05D005712 1.3e-15 87.4 163 30.7
Cpa.g.sc6.211 Carica papaya HOM05D001544 ORTHO05D005712 2.1e-15 86.7 176 34.1
Cc07_g10380 Coffea canephora HOM05D001544 ORTHO05D005712 2.8e-15 86.3 159 35.2
RcHm_v2.0_Chr2g0099951 Rosa chinensis HOM05D001544 ORTHO05D005712 2.8e-15 86.3 174 33.3
vmacro21904 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 2.8e-15 86.3 159 30.8
EL10As8g23856 Beta vulgaris HOM05D001544 ORTHO05D005712 3.6e-15 85.9 123 39.8
Carub.0005s1750 Capsella rubella HOM05D001544 ORTHO05D005712 6.2e-15 85.1 191 33.0
Gohir.A11G178100 Gossypium hirsutum HOM05D001544 ORTHO05D005712 6.2e-15 85.1 184 34.2
PSO541G2534 Papaver somniferum HOM05D001544 ORTHO05D005712 6.2e-15 85.1 200 30.5
PSO675G4981 Papaver somniferum HOM05D001544 ORTHO05D005712 6.2e-15 85.1 200 31.0
unitig_0.g2167 Utricularia gibba HOM05D001544 ORTHO05D005712 6.2e-15 85.1 201 32.3
Aa31LG4G19200 Aethionema arabicum HOM05D001544 ORTHO05D005712 8.1e-15 84.7 178 34.3
CARHR160690 Cardamine hirsuta HOM05D001544 ORTHO05D005712 8.1e-15 84.7 197 32.0
THA.LOC104826761 Tarenaya hassleriana HOM05D001544 ORTHO05D005712 1.8e-14 83.6 203 31.5
PGSC0003DMG402003620 Solanum tuberosum HOM05D001544 ORTHO05D005712 2.4e-14 83.2 167 29.9
VMungo1127G0458 Vigna mungo HOM05D001544 ORTHO05D005712 3.1e-14 82.8 165 32.1
Gohir.D11G185900 Gossypium hirsutum HOM05D001544 ORTHO05D005712 4.0e-14 82.4 167 32.9
AL5G31520 Arabidopsis lyrata HOM05D001544 ORTHO05D005712 5.3e-14 82.0 197 33.0
PSO170G3698 Papaver somniferum HOM05D001544 ORTHO05D005712 6.9e-14 81.6 118 39.8
Sopen02g029220 Solanum pennellii HOM05D001544 ORTHO05D005712 6.9e-14 81.6 167 29.3
Solyc02g084550.3 Solanum lycopersicum HOM05D001544 ORTHO05D005712 9.0e-14 81.3 167 29.3
Haze_03811 Corylus avellana HOM05D001544 ORTHO05D005712 1.5e-13 80.5 193 31.1
Gorai.007G197500 Gossypium raimondii HOM05D001544 ORTHO05D005712 2.0e-13 80.1 171 32.7
Cfa006938 Carpinus fangiana HOM05D001544 ORTHO05D005712 2.6e-13 79.7 118 40.7
Thhalv10010713m.g Eutrema salsugineum HOM05D001544 ORTHO05D005712 4.5e-13 79.0 202 32.2
MD15G1249400 Malus domestica HOM05D001544 ORTHO05D005712 7.6e-13 78.2 182 32.4
HPP92_022282 Vanilla planifolia HOM05D001544 ORTHO05D005712 7.6e-13 78.2 139 38.1
arahy.Tifrunner.gnm1.ann1.3TM7ML Arachis hypogaea HOM05D001544 ORTHO05D005712 9.9e-13 77.8 116 37.1
vmacro22095 Vaccinium macrocarpon HOM05D001544 ORTHO05D005712 9.9e-13 77.8 226 30.1
Lalb_Chr19g0138931 Lupinus albus HOM05D001544 ORTHO05D005712 2.2e-12 76.6 145 33.1
Peaxi162Scf00010g00610 Petunia axillaris HOM05D001544 ORTHO05D005712 8.4e-12 74.7 165 30.3
Dinv33599 Davidia involucrata HOM05D001544 ORTHO05D005712 1.1e-11 74.3 95 40.0
Migut.H02483 Erythranthe guttata HOM05D001544 ORTHO05D005712 1.4e-11 73.9 162 32.7
FvH4_1g12190 Fragaria vesca HOM05D001544 ORTHO05D005712 1.9e-11 73.6 133 30.1
Os09g0530700 Oryza sativa ssp. japonica HOM05D001544 ORTHO05D005712 1.9e-11 73.6 110 38.2
FAN23G1654 Fragaria x ananassa HOM05D002906 ORTHO05D003211 2.4e-11 73.2 100 33.0
FAN26G2191 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.2e-11 72.4 100 33.0
FAN28G0278 Fragaria x ananassa HOM05D001544 ORTHO05D005712 4.2e-11 72.4 100 33.0
Thecc.01G023700 Theobroma cacao HOM05D001544 ORTHO05D005712 1.6e-10 70.5 170 32.9
FAN23G2664 Fragaria x ananassa HOM05D001544 ORTHO05D005712 2.7e-10 69.7 86 34.9
CDE12G0819 Ceratophyllum demersum HOM05D001544 ORTHO05D002732 4.6e-10 68.9 139 34.5
arahy.Tifrunner.gnm1.ann1.N6BS4T Arachis hypogaea HOM05D001544 ORTHO05D005712 6.0e-10 68.6 94 38.3
Zm00001eb103400 Zea mays HOM05D001544 ORTHO05D005712 7.9e-10 68.2 203 28.1
Pp3c1_40190 Physcomitrium patens HOM05D001544 ORTHO05D005712 3.0e-09 66.2 80 46.2
CARHR160680 Cardamine hirsuta HOM05D001544 ORTHO05D005712 1.1e-08 64.3 180 30.0
Oeu037732.1 Olea europaea HOM05D001544 ORTHO05D005712 3.7e-07 59.3 119 32.8
Rhsim08G0035500 Rhododendron simsii HOM05D001544 ORTHO05D005712 3.7e-07 59.3 132 31.1
Sabra05G0096400 Salix brachista HOM05D001544 ORTHO05D005712 2.4e-06 56.6 115 34.8


User provided reference genes

Program Settings