Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 3.4e-231 804.7 411 100.0
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 4.2e-64 249.6 303 41.9
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 9.6e-45 185.3 230 42.6
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 3.8e-41 173.3 303 34.0
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 4.2e-40 169.9 303 33.7
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 9.3e-40 168.7 315 33.7
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.2e-39 168.3 324 34.3
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 2.1e-39 167.5 305 33.4
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 7.9e-39 165.6 313 32.6
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.0e-38 165.2 312 32.7
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 1.0e-38 165.2 385 29.9
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.3e-38 164.9 352 31.2
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 2.3e-38 164.1 303 32.3
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 3.0e-38 163.7 313 32.6
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 3.0e-38 163.7 313 32.6
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 5.1e-38 162.9 313 32.3
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 8.7e-38 162.2 313 32.6
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 8.7e-38 162.2 326 31.9
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 8.7e-38 162.2 344 31.7
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.1e-37 161.8 313 32.9
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 1.1e-37 161.8 301 34.2
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 1.1e-37 161.8 395 30.1
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 1.9e-37 161.0 313 32.3
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 3.3e-37 160.2 392 30.1
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 4.3e-37 159.8 348 31.9
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 1.3e-36 158.3 313 32.3
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 1.6e-36 157.9 296 31.8
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 2.8e-36 157.1 304 30.3
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 4.8e-36 156.4 303 32.3
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 6.3e-36 156.0 302 33.8
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 8.2e-36 155.6 314 31.8
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 8.2e-36 155.6 319 31.0
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 8.2e-36 155.6 312 31.4
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 8.2e-36 155.6 310 31.3
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 1.1e-35 155.2 385 29.9
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 1.8e-35 154.5 339 30.7
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 3.1e-35 153.7 309 32.7
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 3.1e-35 153.7 313 31.0
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 4.1e-35 153.3 300 32.3
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 5.3e-35 152.9 322 28.6
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 6.9e-35 152.5 317 30.9
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 1.2e-34 151.8 307 30.9
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 1.5e-34 151.4 325 31.4
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 2.0e-34 151.0 304 30.9
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 3.4e-34 150.2 330 31.8
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 3.4e-34 150.2 319 32.6
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 4.5e-34 149.8 296 29.4
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 1.0e-33 148.7 313 30.0
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 1.7e-33 147.9 349 28.4
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 2.2e-33 147.5 337 30.3
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 2.2e-33 147.5 302 30.1
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 2.2e-33 147.5 302 32.5
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 2.2e-33 147.5 316 28.8
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 3.8e-33 146.7 390 29.7
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 6.5e-33 146.0 326 29.1
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 6.5e-33 146.0 299 29.8
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 6.5e-33 146.0 309 31.4
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 1.1e-32 145.2 297 31.0
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 1.1e-32 145.2 320 28.4
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 1.9e-32 144.4 304 31.2
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 2.5e-32 144.1 315 29.5
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 3.2e-32 143.7 296 29.1
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 4.2e-32 143.3 319 30.4
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 5.5e-32 142.9 314 27.7
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 5.5e-32 142.9 321 30.8
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 7.2e-32 142.5 301 30.6
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 7.2e-32 142.5 390 29.7
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 7.2e-32 142.5 302 28.8
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 9.4e-32 142.1 294 30.6
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 9.4e-32 142.1 357 28.6
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 9.4e-32 142.1 308 31.2
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 1.2e-31 141.7 333 28.5
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.6e-31 141.4 296 29.1
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 1.6e-31 141.4 297 29.0
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 1.6e-31 141.4 326 28.8
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 2.1e-31 141.0 300 29.7
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 2.1e-31 141.0 352 28.7
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 2.7e-31 140.6 310 30.3
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.6e-31 140.2 321 30.2
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 4.6e-31 139.8 335 26.9
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 7.9e-31 139.0 321 29.9
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 1.0e-30 138.7 296 32.1
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 1.8e-30 137.9 286 29.4
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 1.8e-30 137.9 313 31.3
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 2.3e-30 137.5 318 28.0
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 2.3e-30 137.5 304 28.6
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 5.1e-30 136.3 323 28.5
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 5.1e-30 136.3 232 31.5
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 8.8e-30 135.6 365 28.2
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 8.8e-30 135.6 313 28.4
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 1.5e-29 134.8 313 29.7
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 2.5e-29 134.0 312 27.9
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 2.5e-29 134.0 339 28.9
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 3.3e-29 133.7 302 28.5
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 5.7e-29 132.9 313 29.1
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 5.7e-29 132.9 313 28.8
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 1.3e-28 131.7 232 33.6
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 2.8e-28 130.6 337 29.7
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 4.1e-27 126.7 295 28.5
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 1.5e-26 124.8 215 32.6
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.5e-26 124.8 318 27.7
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 3.4e-26 123.6 294 28.2
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 8.5e-25 119.0 232 31.9
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 8.5e-25 119.0 223 31.4
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 7.2e-24 115.9 335 27.2
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.6e-23 114.8 321 28.3
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 1.6e-23 114.8 318 25.5
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 3.6e-23 113.6 309 28.2
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 1.1e-21 108.6 340 25.3
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 5.7e-21 106.3 272 29.8
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 1.1e-19 102.1 228 30.7
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 2.0e-18 97.8 140 37.1
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 1.3e-17 95.1 141 34.0
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 1.3e-17 95.1 202 31.7
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 2.9e-17 94.0 267 27.3
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 1.5e-13 81.6 356 24.2
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 4.5e-10 70.1 175 27.4
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 5.9e-10 69.7 114 34.2
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 5.5e-08 63.2 134 31.3
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 1.2e-07 62.0 185 26.5
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 8.8e-06 55.8 118 34.7


User provided reference genes

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