Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.9e-257 891.3 438 100.0
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.7e-164 583.2 433 66.5
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 4.7e-122 442.2 343 58.0
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 1.5e-115 420.6 340 57.1
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 6.1e-114 415.2 344 54.4
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 5.2e-113 412.1 340 56.2
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 4.1e-110 402.5 356 53.4
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 8.8e-105 384.8 388 50.5
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 3.7e-103 379.4 344 53.2
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 1.1e-102 377.9 377 49.6
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 1.4e-102 377.5 362 51.4
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 3.1e-102 376.3 403 48.9
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 1.2e-101 374.4 386 48.7
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 2.7e-101 373.2 390 48.7
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.7e-101 373.2 364 48.9
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 3.5e-101 372.9 403 48.1
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 7.7e-101 371.7 346 52.3
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 1.0e-100 371.3 403 48.4
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 1.3e-100 370.9 442 44.6
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 1.7e-100 370.5 341 51.6
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 2.3e-100 370.2 341 51.6
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 2.9e-100 369.8 341 51.6
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.9e-100 369.8 383 44.9
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 3.8e-100 369.4 339 52.8
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 5.0e-100 369.0 344 53.8
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 6.6e-100 368.6 351 49.3
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 8.6e-100 368.2 339 52.5
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 1.9e-99 367.1 351 50.7
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 1.9e-99 367.1 363 50.7
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 1.9e-99 367.1 341 51.6
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 1.9e-99 367.1 341 51.9
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 3.3e-99 366.3 356 50.8
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 4.2e-99 365.9 342 50.9
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 5.5e-99 365.5 341 51.3
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 5.5e-99 365.5 344 52.3
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 5.5e-99 365.5 351 48.7
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 5.5e-99 365.5 341 51.6
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 7.2e-99 365.2 341 53.4
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 7.2e-99 365.2 341 51.9
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 7.2e-99 365.2 351 48.7
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 9.5e-99 364.8 341 51.0
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 1.2e-98 364.4 377 48.0
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 1.2e-98 364.4 341 50.7
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 1.2e-98 364.4 362 50.6
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 1.2e-98 364.4 341 51.0
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 2.1e-98 363.6 339 51.0
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 2.1e-98 363.6 400 47.2
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 6.1e-98 362.1 341 50.1
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 6.1e-98 362.1 341 51.3
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 8.0e-98 361.7 341 51.3
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 1.0e-97 361.3 348 51.1
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 1.0e-97 361.3 341 50.4
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 1.0e-97 361.3 341 51.9
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 1.4e-97 360.9 345 50.7
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.8e-97 360.5 341 51.6
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 2.3e-97 360.1 341 51.0
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 2.3e-97 360.1 338 51.2
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 2.3e-97 360.1 339 49.6
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 2.3e-97 360.1 372 47.6
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 5.2e-97 359.0 348 50.9
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 5.2e-97 359.0 342 51.8
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 5.2e-97 359.0 341 51.3
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 5.2e-97 359.0 402 47.0
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 8.9e-97 358.2 346 50.0
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 8.9e-97 358.2 397 46.9
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 1.2e-96 357.8 341 49.3
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 1.5e-96 357.5 341 49.9
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 2.0e-96 357.1 341 49.9
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 2.6e-96 356.7 418 46.2
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 3.4e-96 356.3 341 51.0
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 3.4e-96 356.3 346 49.7
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 3.4e-96 356.3 345 51.0
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 4.4e-96 355.9 428 43.7
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 4.4e-96 355.9 341 50.4
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 4.4e-96 355.9 341 49.6
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 5.7e-96 355.5 342 50.9
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 1.7e-95 354.0 346 48.6
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.7e-95 354.0 349 47.9
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 2.8e-95 353.2 367 48.0
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 2.8e-95 353.2 341 49.3
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 2.8e-95 353.2 341 50.7
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 2.8e-95 353.2 341 49.6
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 6.3e-95 352.1 338 50.3
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 8.3e-95 351.7 358 49.2
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 1.1e-94 351.3 338 50.6
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 1.1e-94 351.3 339 50.7
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.8e-94 350.5 343 47.2
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 1.8e-94 350.5 340 49.7
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 2.4e-94 350.1 342 50.0
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 2.4e-94 350.1 343 50.7
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 5.4e-94 349.0 303 52.8
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 9.2e-94 348.2 342 48.8
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 1.6e-93 347.4 346 50.6
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.6e-93 347.4 341 49.0
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 2.7e-93 346.7 388 46.9
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 3.5e-93 346.3 348 48.9
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 3.5e-93 346.3 339 50.7
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 3.5e-93 346.3 394 44.9
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 3.5e-93 346.3 342 48.8
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 5.9e-93 345.5 341 49.9
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 7.8e-93 345.1 377 45.4
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 1.0e-92 344.7 342 48.8
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 1.7e-92 344.0 351 48.7
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 2.3e-92 343.6 305 53.1
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 2.9e-92 343.2 346 48.6
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 2.9e-92 343.2 343 49.3
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 6.6e-92 342.0 402 43.3
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 6.6e-92 342.0 343 49.9
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.1e-91 341.3 363 45.5
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 1.1e-91 341.3 387 44.7
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 1.1e-91 341.3 338 48.8
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 1.9e-91 340.5 351 48.7
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 1.9e-91 340.5 390 44.1
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 1.9e-91 340.5 349 49.0
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 2.5e-91 340.1 382 45.3
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 4.3e-91 339.3 401 43.9
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 7.3e-91 338.6 346 49.4
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 7.3e-91 338.6 346 49.4
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 7.3e-91 338.6 346 49.4
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 9.5e-91 338.2 399 43.9
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 9.5e-91 338.2 341 46.9
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 1.2e-90 337.8 408 43.9
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 2.1e-90 337.0 352 47.2
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 2.1e-90 337.0 338 49.7
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 2.8e-90 336.7 352 47.2
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 6.1e-90 335.5 341 48.7
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 8.0e-90 335.1 341 47.8
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 8.0e-90 335.1 341 47.8
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 8.0e-90 335.1 341 47.8
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 8.0e-90 335.1 367 45.8
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 1.0e-89 334.7 346 48.0
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 2.3e-89 333.6 342 47.1
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 3.1e-89 333.2 359 46.2
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 3.1e-89 333.2 343 47.8
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 4.0e-89 332.8 341 49.0
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 4.0e-89 332.8 342 49.1
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 4.0e-89 332.8 339 48.7
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 8.9e-89 331.6 341 49.0
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 1.5e-88 330.9 341 48.7
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 2.6e-88 330.1 352 46.3
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 2.6e-88 330.1 332 48.2
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 3.4e-88 329.7 345 46.1
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 4.4e-88 329.3 421 40.4
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 7.5e-88 328.6 400 44.2
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 9.8e-88 328.2 401 44.4
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.3e-87 327.8 355 45.1
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 2.0e-85 320.5 345 48.1
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 6.0e-85 318.9 288 52.8
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 1.3e-84 317.8 318 49.1
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 3.6e-82 309.7 286 52.1
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 6.8e-81 305.4 344 43.6
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 8.9e-81 305.1 341 42.8
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 1.3e-76 291.2 359 42.6
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 3.9e-76 289.7 352 41.5
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 1.4e-73 281.2 341 42.5
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 4.0e-73 279.6 342 41.5
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 1.5e-72 277.7 377 39.3
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 2.6e-72 276.9 402 40.5
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 5.8e-72 275.8 305 43.9
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 1.1e-70 271.6 252 52.4
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 3.5e-69 266.5 371 38.3
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 1.0e-68 265.0 349 41.8
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 8.6e-68 261.9 348 40.8
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 2.8e-66 256.9 250 49.6
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 1.0e-60 238.4 193 60.1
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 2.8e-58 230.3 244 45.9
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 1.4e-57 228.0 237 46.0
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 6.9e-57 225.7 240 45.8
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 8.1e-50 202.2 237 39.2
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 9.3e-46 188.7 239 38.9
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 2.8e-34 150.6 416 27.9
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 1.0e-28 132.1 156 45.5
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 3.8e-23 113.6 117 43.6
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 9.4e-22 109.0 120 39.2
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 3.6e-21 107.1 155 40.6
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.2e-16 92.0 103 39.8
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 8.2e-10 69.3 140 31.4
Cre06.g260650 Chlamydomonas reinhardtii HOM05D003650 ORTHO05D004213 1.9e-06 58.2 101 33.7
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 2.5e-06 57.8 68 32.4


User provided reference genes

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