Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_13800 Physcomitrium patens HOM05D005477 ORTHO05D006721 7.8e-42 173.3 85 100.0
Pp3c1_24730 Physcomitrium patens HOM05D005477 ORTHO05D006721 1.1e-35 152.9 77 93.5
Mapoly0053s0096 Marchantia polymorpha HOM05D005477 ORTHO05D006721 2.4e-27 125.2 85 69.4
CBR_g39209 Chara braunii HOM05D005477 ORTHO05D006721 3.3e-24 114.8 80 65.0
Lsat_1_v5_gn_2_59701 Lactuca sativa HOM05D005477 ORTHO05D006721 9.6e-24 113.2 84 59.5
GSVIVG01010508001 Vitis vinifera HOM05D005477 ORTHO05D006721 1.8e-22 109.0 76 63.2
Aa31LG6G2560 Aethionema arabicum HOM05D005477 ORTHO05D006721 1.2e-21 106.3 82 56.1
Oeu005613.1 Olea europaea HOM05D005477 ORTHO05D006721 1.2e-21 106.3 79 59.5
Aqoxy1G01389 Aquilegia oxysepala HOM05D005477 ORTHO05D006721 1.5e-21 105.9 75 62.7
DCAR_001258 Daucus carota HOM05D005477 ORTHO05D006721 1.5e-21 105.9 77 62.3
HanXRQChr09g0257861 Helianthus annuus HOM05D005477 ORTHO05D006721 1.5e-21 105.9 75 61.3
vmacro03568 Vaccinium macrocarpon HOM05D005477 ORTHO05D006721 1.5e-21 105.9 77 59.7
Cpa.g.sc2054.1 Carica papaya HOM05D005477 ORTHO05D006721 3.4e-21 104.8 77 58.4
HanXRQChr14g0439061 Helianthus annuus HOM05D005477 ORTHO05D006721 3.4e-21 104.8 75 61.3
CiPaw.10G107900 Carya illinoinensis HOM05D005477 ORTHO05D006721 4.5e-21 104.4 77 58.4
DCAR_016635 Daucus carota HOM05D005477 ORTHO05D006721 5.8e-21 104.0 79 57.0
Sc24g0002840 Simmondsia chinensis HOM05D005477 ORTHO05D006721 5.8e-21 104.0 77 57.1
Ah.08g212300 Amaranthus hybridus HOM05D003310 ORTHO05D006721 7.6e-21 103.6 76 59.2
C07p50750 Brassica napus HOM05D005477 ORTHO05D006721 1.0e-20 103.2 79 55.7
CsaV3_6G053130 Cucumis sativus L. HOM05D005477 ORTHO05D006721 1.0e-20 103.2 77 57.1
Dinv17881 Davidia involucrata HOM05D005477 ORTHO05D006721 1.0e-20 103.2 75 60.0
Cfa001157 Carpinus fangiana HOM05D005477 ORTHO05D006721 1.3e-20 102.8 79 55.7
Haze_05194 Corylus avellana HOM05D005477 ORTHO05D006721 1.3e-20 102.8 79 55.7
DCAR_004357 Daucus carota HOM05D005477 ORTHO05D006721 1.3e-20 102.8 75 60.0
Hund08547 Selenicereus undatus HOM05D005477 ORTHO05D006721 1.3e-20 102.8 76 59.2
A03p52320 Brassica napus HOM05D005477 ORTHO05D006721 1.7e-20 102.4 79 55.7
BolC7t45576H Brassica oleracea HOM05D005477 ORTHO05D006721 1.7e-20 102.4 79 55.7
CSS0024293 Camellia sinensis var. sinensis HOM05D005477 ORTHO05D006721 1.7e-20 102.4 75 58.7
CARHR226980 Cardamine hirsuta HOM05D005477 ORTHO05D006721 1.7e-20 102.4 75 60.0
PSO675G9273 Papaver somniferum HOM05D005477 ORTHO05D006721 1.7e-20 102.4 75 61.3
TAR624G0209 Trochodendron aralioides HOM05D005477 ORTHO05D006721 1.7e-20 102.4 75 60.0
A01p11900 Brassica napus HOM05D005477 ORTHO05D006721 2.2e-20 102.1 77 57.1
BraA01t01132Z Brassica rapa HOM05D005477 ORTHO05D006721 2.2e-20 102.1 77 57.1
MD05G1243500 Malus domestica HOM05D005477 ORTHO05D006721 2.2e-20 102.1 76 60.5
Nn7g38416 Nelumbo nucifera HOM05D005477 ORTHO05D006721 2.2e-20 102.1 75 58.7
Oeu046914.1 Olea europaea HOM05D005477 ORTHO05D006721 2.2e-20 102.1 79 57.0
A08p14650 Brassica napus HOM05D005477 ORTHO05D006721 2.9e-20 101.7 77 57.1
C03p82800 Brassica napus HOM05D005477 ORTHO05D006721 2.9e-20 101.7 77 57.1
BolC3t20562H Brassica oleracea HOM05D005477 ORTHO05D006721 2.9e-20 101.7 77 57.1
BraA08t33453Z Brassica rapa HOM05D005477 ORTHO05D006721 2.9e-20 101.7 77 57.1
ClCG01G025920 Citrullus lanatus HOM05D005477 ORTHO05D006721 2.9e-20 101.7 77 55.8
Dinv01135 Davidia involucrata HOM05D005477 ORTHO05D006721 2.9e-20 101.7 75 58.7
Medtr4g094792 Medicago truncatula HOM05D005477 ORTHO05D006721 2.9e-20 101.7 80 55.0
BraA03t14308Z Brassica rapa HOM05D005477 ORTHO05D006721 3.8e-20 101.3 79 55.7
CiPaw.09G140100 Carya illinoinensis HOM05D005477 ORTHO05D006721 3.8e-20 101.3 75 58.7
AUR62042809 Chenopodium quinoa HOM05D005477 ORTHO05D006721 3.8e-20 101.3 77 58.4
MBI18_g21701_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 3.8e-20 101.3 77 55.8
Manes.03G072100 Manihot esculenta HOM05D005477 ORTHO05D006721 3.8e-20 101.3 75 58.7
Zm00001eb321910 Zea mays HOM05D005477 ORTHO05D006721 3.8e-20 101.3 79 57.0
Ah.15g091860 Amaranthus hybridus HOM05D005477 ORTHO05D006721 4.9e-20 100.9 75 58.7
AL7G33670 Arabidopsis lyrata HOM05D005477 ORTHO05D006721 4.9e-20 100.9 75 58.7
AT4G20150 Arabidopsis thaliana HOM05D005477 ORTHO05D006721 4.9e-20 100.9 75 58.7
Carub.0007s2098 Capsella rubella HOM05D005477 ORTHO05D006721 4.9e-20 100.9 75 58.7
MBI18_g35539_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 4.9e-20 100.9 75 57.3
Sp7g18580 Schrenkiella parvula HOM05D005477 ORTHO05D006721 4.9e-20 100.9 75 58.7
Sed0007385 Sechium edule HOM05D005477 ORTHO05D006721 4.9e-20 100.9 75 57.3
HPP92_026455 Vanilla planifolia HOM05D005477 ORTHO05D006721 4.9e-20 100.9 75 58.7
Cc09_g04680 Coffea canephora HOM05D005477 ORTHO05D006721 6.5e-20 100.5 75 58.7
MELO3C006999.2 Cucumis melo HOM05D005477 ORTHO05D006721 6.5e-20 100.5 75 57.3
Thhalv10026700m.g Eutrema salsugineum HOM05D005477 ORTHO05D006721 6.5e-20 100.5 75 58.7
PGR042G1348 Punica granatum HOM05D005477 ORTHO05D006721 6.5e-20 100.5 75 57.3
Thecc.02G001600 Theobroma cacao HOM05D005477 ORTHO05D006721 6.5e-20 100.5 75 57.3
Ciclev10017510m.g Citrus clementina HOM05D005477 ORTHO05D006721 8.4e-20 100.1 75 57.3
COL.COLO4_25033 Corchorus olitorius HOM05D005477 ORTHO05D006721 8.4e-20 100.1 75 57.3
BcaNung03492 Brassica carinata HOM05D005477 ORTHO05D006721 1.1e-19 99.8 75 57.3
Ca_18217_v3 Cicer arietinum L. HOM05D005477 ORTHO05D006721 1.1e-19 99.8 76 56.6
ECA238G4156 Erigeron canadensis HOM05D005477 ORTHO05D006721 1.1e-19 99.8 75 58.7
Lalb_Chr07g0188151 Lupinus albus HOM05D005477 ORTHO05D006721 1.1e-19 99.8 76 57.9
MBI18_g18219_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 1.1e-19 99.8 75 56.0
MD10G1225400 Malus domestica HOM05D005477 ORTHO05D006721 1.1e-19 99.8 76 59.2
Sabra01G0054000 Salix brachista HOM05D005477 ORTHO05D006721 1.1e-19 99.8 79 53.2
BcaNung03709 Brassica carinata HOM05D005477 ORTHO05D006721 1.4e-19 99.4 75 57.3
Prupe.4G120200 Prunus persica HOM05D005477 ORTHO05D006721 1.4e-19 99.4 76 56.6
THA.LOC104811905 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 1.4e-19 99.4 75 57.3
BcaB03g11659 Brassica carinata HOM05D005477 ORTHO05D006721 1.9e-19 99.0 75 57.3
BcaC01g00657 Brassica carinata HOM05D005477 ORTHO05D006721 1.9e-19 99.0 75 57.3
BcaC06g30645 Brassica carinata HOM05D005477 ORTHO05D006721 1.9e-19 99.0 75 57.3
Duzib132G0617 Durio zibethinus HOM05D005477 ORTHO05D006721 1.9e-19 99.0 75 56.0
QL11p010970 Quercus lobata HOM05D005477 ORTHO05D006721 1.9e-19 99.0 82 52.4
Sabra03G0113300 Salix brachista HOM05D005477 ORTHO05D006721 1.9e-19 99.0 75 56.0
Atru.chr10.245 Acer truncatum HOM05D005477 ORTHO05D006721 2.5e-19 98.6 75 56.0
MSTRG.16378 Avicennia marina HOM05D005477 ORTHO05D006721 2.5e-19 98.6 75 58.7
AUR62040995 Chenopodium quinoa HOM05D005477 ORTHO05D006721 2.5e-19 98.6 76 57.9
Eucgr.E04324 Eucalyptus grandis HOM05D005477 ORTHO05D006721 2.5e-19 98.6 75 57.3
Os07g0498300 Oryza sativa ssp. japonica HOM05D005477 ORTHO05D006721 2.5e-19 98.6 75 57.3
Psat7g087320 Pisum sativum HOM05D005477 ORTHO05D006721 2.5e-19 98.6 76 55.3
Nitab4.5_0004786g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 3.2e-19 98.2 77 55.8
Glyma.05G134900 Glycine max HOM05D005477 ORTHO05D006721 4.2e-19 97.8 73 56.2
Glyma.08G090100 Glycine max HOM05D005477 ORTHO05D006721 4.2e-19 97.8 73 56.2
Potri.001G074901 Populus trichocarpa HOM05D005477 ORTHO05D006721 4.2e-19 97.8 75 56.0
THA.LOC104812922 Tarenaya hassleriana HOM05D005477 ORTHO05D006721 4.2e-19 97.8 75 57.3
TPR.G27391 Trifolium pratense HOM05D005477 ORTHO05D006721 4.2e-19 97.8 76 53.9
CAN.G105.21 Capsicum annuum HOM05D005477 ORTHO05D006721 5.5e-19 97.4 82 53.7
Gohir.A12G050600 Gossypium hirsutum HOM05D005477 ORTHO05D006721 5.5e-19 97.4 75 54.7
Gohir.A12G050700 Gossypium hirsutum HOM05D005477 ORTHO05D006721 5.5e-19 97.4 75 54.7
Gohir.D12G048900 Gossypium hirsutum HOM05D005477 ORTHO05D006721 5.5e-19 97.4 75 54.7
Gohir.D12G049000 Gossypium hirsutum HOM05D005477 ORTHO05D006721 5.5e-19 97.4 75 54.7
Gorai.008G051800 Gossypium raimondii HOM05D005477 ORTHO05D006721 5.5e-19 97.4 75 54.7
Potri.003G156301 Populus trichocarpa HOM05D005477 ORTHO05D006721 7.1e-19 97.1 75 54.7
Zm00001eb105410 Zea mays HOM05D005477 ORTHO05D006721 7.1e-19 97.1 76 57.9
EL10Ac7g17253 Beta vulgaris HOM05D005477 ORTHO05D006721 9.3e-19 96.7 76 55.3
Gorai.008G051900 Gossypium raimondii HOM05D005477 ORTHO05D006721 9.3e-19 96.7 75 53.3
ATR0763G104 Amborella trichopoda HOM05D005477 ORTHO05D006721 1.2e-18 96.3 76 53.9
FvH4_3g13280 Fragaria vesca HOM05D005477 ORTHO05D006721 1.2e-18 96.3 75 56.0
FAN11G1325 Fragaria x ananassa HOM05D005477 ORTHO05D006721 1.2e-18 96.3 75 56.0
FAN16G3377 Fragaria x ananassa HOM05D005477 ORTHO05D006721 1.2e-18 96.3 75 56.0
FAN21G3865 Fragaria x ananassa HOM05D005477 ORTHO05D006721 1.2e-18 96.3 75 56.0
Lj4g0025411 Lotus japonicus HOM05D005477 ORTHO05D006721 2.7e-18 95.1 76 53.9
RcHm_v2.0_Chr5g0021751 Rosa chinensis HOM05D005477 ORTHO05D006721 2.7e-18 95.1 75 56.0
PGSC0003DMG400011262 Solanum tuberosum HOM05D005477 ORTHO05D006721 2.7e-18 95.1 75 57.3
Nitab4.5_0001299g0020 Nicotiana tabacum HOM05D005477 ORTHO05D006721 3.5e-18 94.7 75 56.0
Peaxi162Scf00203g01320 Petunia axillaris HOM05D005477 ORTHO05D006721 3.5e-18 94.7 75 56.0
unitig_748.g7487 Utricularia gibba HOM05D005477 ORTHO05D006721 3.5e-18 94.7 75 54.7
AagrBONN_evm.TU.Sc2ySwM_362.2068 Anthoceros agrestis HOM05D005477 ORTHO05D006721 4.6e-18 94.4 75 57.3
CiPaw.06G130100 Carya illinoinensis HOM05D005477 ORTHO05D006721 4.6e-18 94.4 75 56.0
FAN25G0727 Fragaria x ananassa HOM05D005477 ORTHO05D006721 4.6e-18 94.4 75 54.7
Lalb_Chr13g0293041 Lupinus albus HOM05D005477 ORTHO05D006721 4.6e-18 94.4 76 52.6
arahy.Tifrunner.gnm1.ann1.3VSL80 Arachis hypogaea HOM05D005477 ORTHO05D006721 6.0e-18 94.0 76 52.6
arahy.Tifrunner.gnm1.ann1.Z3SLP7 Arachis hypogaea HOM05D005477 ORTHO05D006721 6.0e-18 94.0 76 52.6
Peaxi162Scf00700g00728 Petunia axillaris HOM05D005477 ORTHO05D006721 6.0e-18 94.0 75 54.7
Sopen10g001220 Solanum pennellii HOM05D005477 ORTHO05D006721 6.0e-18 94.0 75 56.0
CANSAT35G0922 Cannabis sativa HOM05D005477 ORTHO05D006721 7.9e-18 93.6 75 53.3
Phvul.002G187200 Phaseolus vulgaris HOM05D005477 ORTHO05D006721 1.3e-17 92.8 76 52.6
TWI38G0021 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 6.7e-17 90.5 75 49.3
Solyc10g005230.3 Solanum lycopersicum HOM05D005477 ORTHO05D006721 8.7e-17 90.1 69 56.5
SHI16868 Sapria himalayana HOM05D005477 ORTHO05D006721 1.1e-16 89.7 71 50.7
Lalb_Chr07g0188141 Lupinus albus HOM05D005477 ORTHO05D006721 2.5e-16 88.6 77 53.2
CDE12G0557 Ceratophyllum demersum HOM05D005477 ORTHO05D006721 3.3e-16 88.2 70 54.3
Migut.M02030 Erythranthe guttata HOM05D005477 ORTHO05D006721 5.7e-16 87.4 72 51.4
SMO134G0137 Selaginella moellendorffii HOM05D005477 ORTHO05D006721 1.6e-15 85.9 79 48.1
PSO675G4749 Papaver somniferum HOM05D005477 ORTHO05D006721 1.1e-14 83.2 75 53.3
TWI15G0858 Tripterygium wilfordii HOM05D005477 ORTHO05D006721 5.3e-14 80.9 75 45.3
GSVIVG01010076001 Vitis vinifera HOM05D005477 ORTHO05D006721 8.5e-12 73.6 43 76.7
MCO10G264 Micromonas commoda HOM05D005477 ORTHO05D006721 3.2e-11 71.6 68 45.6
Oeu039133.1 Olea europaea HOM05D005477 ORTHO05D006721 7.9e-10 67.0 50 54.0
MBI15_g47666_MAGBIO Magnolia biondii HOM05D005477 ORTHO05D006721 9.7e-08 60.1 74 43.2


User provided reference genes

Program Settings