Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_13150 Physcomitrium patens HOM05D003640 ORTHO05D004439 0.0e+00 1840.5 1029 100.0
Pp3c17_17470 Physcomitrium patens HOM05D003640 ORTHO05D004439 0.0e+00 1142.5 1035 65.5
Mapoly0021s0043 Marchantia polymorpha HOM05D003640 ORTHO05D004439 1.0e-172 611.7 1127 42.9
TAR629G0154 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.0e-83 315.1 800 35.5
TAR375G0550 Trochodendron aralioides HOM05D003640 ORTHO05D004439 6.1e-80 303.5 811 35.9
Nn1g00405 Nelumbo nucifera HOM05D003640 ORTHO05D004439 5.2e-79 300.4 944 32.6
Actinidia34257 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.7e-77 295.4 901 32.1
GSVIVG01038625001 Vitis vinifera HOM05D003640 ORTHO05D004439 6.3e-77 293.5 803 34.2
CsaV3_5G000020 Cucumis sativus L. HOM05D003640 ORTHO05D004439 8.2e-77 293.1 789 34.2
Nn3g18833 Nelumbo nucifera HOM05D003640 ORTHO05D004439 1.1e-76 292.7 778 35.0
Dinv29226 Davidia involucrata HOM05D003640 ORTHO05D004439 1.2e-75 289.3 751 34.9
MELO3C005925.2 Cucumis melo HOM05D003640 ORTHO05D004439 2.0e-75 288.5 766 34.5
PSO135G0929 Papaver somniferum HOM05D003640 ORTHO05D004439 2.0e-75 288.5 790 34.2
TAR636G3562 Trochodendron aralioides HOM05D003640 ORTHO05D004439 2.6e-75 288.1 932 34.0
CSS0041088 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 1.0e-74 286.2 898 34.4
Actinidia08687 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.7e-74 285.4 840 34.5
PSO384G0385 Papaver somniferum HOM05D003640 ORTHO05D004439 6.5e-74 283.5 793 34.2
FvH4_7g32660 Fragaria vesca HOM05D003640 ORTHO05D004439 1.5e-73 282.3 757 36.7
ClCG01G000140 Citrullus lanatus HOM05D003640 ORTHO05D004439 1.9e-73 282.0 759 33.6
Sed0021595 Sechium edule HOM05D003640 ORTHO05D004439 4.2e-73 280.8 754 33.6
ATR0580G072 Amborella trichopoda HOM05D003640 ORTHO05D004439 9.4e-73 279.6 873 34.7
FAN01G0295 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.0e-71 276.2 776 36.3
Ca_16756_v3 Cicer arietinum L. HOM05D003640 ORTHO05D004439 1.8e-71 275.4 896 34.2
THA.LOC104825162 Tarenaya hassleriana HOM05D003640 ORTHO05D004439 1.8e-71 275.4 809 35.2
Sed0000635 Sechium edule HOM05D003640 ORTHO05D004439 5.2e-71 273.9 795 34.1
Duzib084G0116 Durio zibethinus HOM05D003640 ORTHO05D004439 6.7e-71 273.5 804 33.6
Potri.012G023200 Populus trichocarpa HOM05D003640 ORTHO05D004439 6.7e-71 273.5 747 33.6
TWI39G1295 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 6.7e-71 273.5 737 36.2
Haze_00277 Corylus avellana HOM05D003640 ORTHO05D004439 1.2e-70 272.7 906 32.5
Zm00001eb198460 Zea mays HOM05D003640 ORTHO05D004439 2.6e-70 271.6 825 32.7
Prupe.2G317300 Prunus persica HOM05D003640 ORTHO05D004439 3.3e-70 271.2 929 32.0
Os08g0543600 Oryza sativa ssp. japonica HOM05D003640 ORTHO05D004439 1.3e-69 269.2 882 32.7
Lalb_Chr11g0067271 Lupinus albus HOM05D003640 ORTHO05D004439 2.2e-69 268.5 795 33.2
FAN10G0822 Fragaria x ananassa HOM05D003640 ORTHO05D004439 2.8e-69 268.1 783 36.0
FAN10G2795 Fragaria x ananassa HOM05D003640 ORTHO05D004439 4.8e-69 267.3 785 36.3
QL09p007408 Quercus lobata HOM05D003640 ORTHO05D004439 4.8e-69 267.3 896 33.6
Zm00001eb037420 Zea mays HOM05D003640 ORTHO05D004439 1.4e-68 265.8 827 33.0
arahy.Tifrunner.gnm1.ann1.BT3HV7 Arachis hypogaea HOM05D003640 ORTHO05D004439 3.1e-68 264.6 903 32.7
MBI12_g23004_MAGBIO Magnolia biondii HOM05D003640 ORTHO05D004439 3.1e-68 264.6 932 31.5
SEGI_36158 Sequoiadendron giganteum HOM05D003640 ORTHO05D004439 4.1e-68 264.2 421 45.4
Lalb_Chr08g0239801 Lupinus albus HOM05D003640 ORTHO05D004439 5.3e-68 263.8 902 32.0
QL93p0214_0013 Quercus lobata HOM05D003640 ORTHO05D004439 5.3e-68 263.8 894 33.4
Lj1g0027227 Lotus japonicus HOM05D003640 ORTHO05D004439 7.0e-68 263.5 906 31.5
MD01G1227300 Malus domestica HOM05D003640 ORTHO05D004439 7.0e-68 263.5 862 33.1
CANSAT21G0645 Cannabis sativa HOM05D003640 ORTHO05D004439 9.1e-68 263.1 790 33.8
Medtr3g092250 Medicago truncatula HOM05D003640 ORTHO05D004439 2.7e-67 261.5 821 33.1
Psat0s2807g0080 Pisum sativum HOM05D003640 ORTHO05D004439 2.7e-67 261.5 847 34.6
arahy.Tifrunner.gnm1.ann1.1EDB5Y Arachis hypogaea HOM05D003640 ORTHO05D004439 1.0e-66 259.6 908 31.2
FAN03G1455 Fragaria x ananassa HOM05D003640 ORTHO05D004439 1.0e-66 259.6 786 36.0
Potri.015G006700 Populus trichocarpa HOM05D003640 ORTHO05D004439 1.0e-66 259.6 816 33.2
Atru.chr12.2367 Acer truncatum HOM05D003640 ORTHO05D004439 1.3e-66 259.2 819 31.6
MSTRG.26989 Avicennia marina HOM05D003640 ORTHO05D004439 2.2e-66 258.5 747 34.4
Lalb_Chr23g0271841 Lupinus albus HOM05D003640 ORTHO05D004439 2.2e-66 258.5 784 33.8
vmacro06427 Vaccinium macrocarpon HOM05D003640 ORTHO05D004439 2.2e-66 258.5 937 30.6
Manes.01G041300 Manihot esculenta HOM05D003640 ORTHO05D004439 2.9e-66 258.1 874 33.3
SalBow6G0961 Salvia bowleyana HOM05D003640 ORTHO05D004439 8.5e-66 256.5 800 34.4
Glyma.04G230800 Glycine max HOM05D003640 ORTHO05D004439 1.5e-65 255.8 888 32.9
Sabra15G0004700 Salix brachista HOM05D003640 ORTHO05D004439 2.5e-65 255.0 856 32.5
EL10Ac3g05201 Beta vulgaris HOM05D003640 ORTHO05D004439 4.2e-65 254.2 840 33.9
CARHR266770 Cardamine hirsuta HOM05D003640 ORTHO05D004439 7.2e-65 253.4 744 34.8
MD07G1297600 Malus domestica HOM05D003640 ORTHO05D004439 9.4e-65 253.1 930 32.0
Actinidia28276 Actinidia chinensis HOM05D003640 ORTHO05D004439 1.6e-64 252.3 889 30.6
Cc02_g00960 Coffea canephora HOM05D003640 ORTHO05D004439 1.6e-64 252.3 933 32.3
Aqoxy7G00014 Aquilegia oxysepala HOM05D003640 ORTHO05D004439 2.1e-64 251.9 930 30.9
Hund09700 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.1e-64 251.9 807 32.2
CiPaw.06G042300 Carya illinoinensis HOM05D003640 ORTHO05D004439 2.7e-64 251.5 802 33.7
AUR62006022 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.7e-64 251.5 790 33.8
Glyma.06G134300 Glycine max HOM05D003640 ORTHO05D004439 6.1e-64 250.4 901 31.3
PGR142G2086 Punica granatum HOM05D003640 ORTHO05D004439 6.1e-64 250.4 887 31.6
AT5G53620 Arabidopsis thaliana HOM05D003640 ORTHO05D004439 1.0e-63 249.6 759 34.4
RcHm_v2.0_Chr1g0382521 Rosa chinensis HOM05D003640 ORTHO05D004439 1.0e-63 249.6 906 34.2
Oeu037965.1 Olea europaea HOM05D003640 ORTHO05D004439 1.4e-63 249.2 891 31.3
CAN.G358.147 Capsicum annuum HOM05D003640 ORTHO05D004439 1.8e-63 248.8 695 34.7
MSTRG.8618 Avicennia marina HOM05D003640 ORTHO05D004439 3.0e-63 248.1 801 34.6
Rhsim03G0214000 Rhododendron simsii HOM05D003640 ORTHO05D004439 6.8e-63 246.9 882 31.7
MSTRG.8540 Avicennia marina HOM05D003640 ORTHO05D004439 2.6e-62 245.0 757 33.6
Hund21040 Selenicereus undatus HOM05D003640 ORTHO05D004439 2.6e-62 245.0 794 32.1
Migut.F00997 Erythranthe guttata HOM05D003640 ORTHO05D004439 3.4e-62 244.6 920 31.2
AL8G28460 Arabidopsis lyrata HOM05D003640 ORTHO05D004439 9.8e-62 243.0 756 35.8
Carub.0008s1383 Capsella rubella HOM05D003640 ORTHO05D004439 1.7e-61 242.3 702 34.3
CARHR266800 Cardamine hirsuta HOM05D003640 ORTHO05D004439 1.7e-61 242.3 792 33.5
SGA_v2.0_scaffold565G52945 Striga asiatica HOM05D003640 ORTHO05D004439 2.2e-61 241.9 826 31.0
Dinv35374 Davidia involucrata HOM05D003640 ORTHO05D004439 4.8e-61 240.7 839 33.5
CiPaw.05G202900 Carya illinoinensis HOM05D003640 ORTHO05D004439 6.3e-61 240.4 841 33.2
HPP92_020943 Vanilla planifolia HOM05D003640 ORTHO05D008613 6.3e-61 240.4 931 31.8
VMungo1309G3003 Vigna mungo HOM05D003640 ORTHO05D004439 1.8e-60 238.8 897 30.8
CSS0045837 Camellia sinensis var. sinensis HOM05D003640 ORTHO05D004439 2.4e-60 238.4 718 34.4
Solyc03g082490.4 Solanum lycopersicum HOM05D003640 ORTHO05D004439 2.4e-60 238.4 927 31.2
Thecc.03G206700 Theobroma cacao HOM05D003640 ORTHO05D004439 3.1e-60 238.0 801 33.2
Phvul.009G050200 Phaseolus vulgaris HOM05D003640 ORTHO05D004439 5.4e-60 237.3 899 32.6
Aa31sc289G20 Aethionema arabicum HOM05D003640 ORTHO05D004439 7.0e-60 236.9 758 33.4
CDE04G2417 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 1.2e-59 236.1 742 30.3
unitig_92.g28243 Utricularia gibba HOM05D003640 ORTHO05D004439 1.6e-59 235.7 782 30.9
Lsat_1_v5_gn_9_50221 Lactuca sativa HOM05D003640 ORTHO05D004439 4.5e-59 234.2 731 31.1
Oeu061023.1 Olea europaea HOM05D003640 ORTHO05D004439 7.7e-59 233.4 844 31.5
AUR62035604 Chenopodium quinoa HOM05D003640 ORTHO05D004439 2.9e-58 231.5 845 31.5
Nitab4.5_0001993g0040 Nicotiana tabacum HOM05D003640 ORTHO05D004439 2.9e-58 231.5 917 32.0
Sabra12G0010700 Salix brachista HOM05D003640 ORTHO05D004439 2.9e-58 231.5 873 29.9
Carub.0008s1397 Capsella rubella HOM05D003640 ORTHO05D004439 1.1e-57 229.6 741 33.9
DCAR_008967 Daucus carota HOM05D003640 ORTHO05D004439 1.9e-57 228.8 850 30.2
Lsat_1_v5_gn_9_50181 Lactuca sativa HOM05D003640 ORTHO05D004439 7.2e-57 226.9 731 31.5
Sp6g15750 Schrenkiella parvula HOM05D003640 ORTHO05D004439 7.2e-57 226.9 741 32.9
DCAR_020359 Daucus carota HOM05D003640 ORTHO05D004439 1.6e-56 225.7 829 31.0
Gorai.004G124100 Gossypium raimondii HOM05D003640 ORTHO05D004439 1.6e-56 225.7 895 30.3
Gohir.D12G247700 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.1e-56 225.3 901 32.0
Gorai.008G265800 Gossypium raimondii HOM05D003640 ORTHO05D004439 6.1e-56 223.8 901 31.9
Oeu055180.3 Olea europaea HOM05D003640 ORTHO05D004439 6.1e-56 223.8 947 31.7
SGA_v2.0_scaffold136G35055 Striga asiatica HOM05D003640 ORTHO05D004439 6.1e-56 223.8 831 33.1
ECA232G0587 Erigeron canadensis HOM05D003640 ORTHO05D004439 3.0e-55 221.5 862 30.0
Gohir.A12G247000 Gossypium hirsutum HOM05D003640 ORTHO05D004439 3.0e-55 221.5 802 33.0
Gohir.D08G115200 Gossypium hirsutum HOM05D003640 ORTHO05D004439 5.2e-55 220.7 895 30.3
Duzib068G1167 Durio zibethinus HOM05D003640 ORTHO05D004439 8.8e-55 219.9 831 29.6
Gohir.D09G181300 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.4e-54 217.6 836 28.8
HanXRQChr05g0139301 Helianthus annuus HOM05D003640 ORTHO05D004439 1.3e-53 216.1 811 30.2
Gohir.A08G103800 Gossypium hirsutum HOM05D003640 ORTHO05D004439 2.8e-53 214.9 897 30.4
Gorai.006G203300 Gossypium raimondii HOM05D003640 ORTHO05D004439 6.3e-53 213.8 746 31.0
PSO063G3729 Papaver somniferum HOM05D003640 ORTHO05D004439 2.4e-52 211.8 819 29.1
Sc19g0000670 Simmondsia chinensis HOM05D003640 ORTHO05D004439 9.2e-52 209.9 757 32.5
Thhalv10012857m.g Eutrema salsugineum HOM05D003640 ORTHO05D004439 1.6e-51 209.1 740 32.7
Gohir.A09G186400 Gossypium hirsutum HOM05D003640 ORTHO05D004439 4.5e-51 207.6 825 29.5
BolC3t14166H Brassica oleracea HOM05D003640 ORTHO05D004439 2.9e-50 204.9 757 30.9
Hma1.2p1_0094F.1_g047240 Hydrangea macrophylla HOM05D003640 ORTHO05D004439 2.9e-50 204.9 879 31.1
Ah.07g204850 Amaranthus hybridus HOM05D003640 ORTHO05D004439 1.5e-49 202.6 869 30.5
HanXRQChr15g0485391 Helianthus annuus HOM05D003640 ORTHO05D004439 1.9e-49 202.2 744 30.8
BraA03t10798Z Brassica rapa HOM05D003640 ORTHO05D004439 2.1e-48 198.7 757 31.0
A03p15040 Brassica napus HOM05D003640 ORTHO05D004439 6.1e-48 197.2 753 30.7
SalBow2G2490 Salvia bowleyana HOM05D003640 ORTHO05D004439 8.0e-48 196.8 782 30.9
C03p17530 Brassica napus HOM05D003640 ORTHO05D004439 1.8e-47 195.7 751 30.8
Duzib205G1657 Durio zibethinus HOM05D003640 ORTHO05D004439 1.8e-47 195.7 793 30.5
Sp6g15760 Schrenkiella parvula HOM05D003640 ORTHO05D004439 2.3e-47 195.3 653 33.5
Sopen03g022220 Solanum pennellii HOM05D003640 ORTHO05D004439 3.0e-47 194.9 802 31.0
BcaB01g04251 Brassica carinata HOM05D003640 ORTHO05D004439 2.6e-46 191.8 753 30.9
TWI23G0563 Tripterygium wilfordii HOM05D003640 ORTHO05D004439 4.1e-44 184.5 692 29.2
COL.COLO4_14351 Corchorus olitorius HOM05D003640 ORTHO05D004439 5.4e-44 184.1 746 27.6
BcaB05g22060 Brassica carinata HOM05D003640 ORTHO05D004439 8.6e-42 176.8 711 30.5
Cpa.g.sc3.144 Carica papaya HOM05D003640 ORTHO05D004439 4.7e-40 171.0 639 30.8
QL09p007399 Quercus lobata HOM05D003640 ORTHO05D004439 8.6e-34 150.2 342 34.5
QL93p0214_0021 Quercus lobata HOM05D003640 ORTHO05D004439 8.6e-34 150.2 342 34.5
Lj1C1026T8 Lonicera japonica HOM05D003640 ORTHO05D004439 3.1e-31 141.7 913 28.6
BcaC01g06262 Brassica carinata HOM05D003640 ORTHO05D004439 2.4e-28 132.1 213 46.5
SHI02298 Sapria himalayana HOM05D003640 ORTHO05D004439 2.4e-28 132.1 436 31.2
RcHm_v2.0_Chr1g0382611 Rosa chinensis HOM05D003640 ORTHO05D004439 6.0e-27 127.5 134 53.0
BcaB01g04247 Brassica carinata HOM05D003640 ORTHO05D004439 2.5e-25 122.1 213 46.0
A03p14940 Brassica napus HOM05D003640 ORTHO05D004439 1.6e-24 119.4 143 49.0
BraA03t10789Z Brassica rapa HOM05D003640 ORTHO05D004439 1.6e-24 119.4 143 49.0
CDE04G2700 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 4.0e-23 114.8 117 52.1
RcHm_v2.0_Chr1g0382641 Rosa chinensis HOM05D003640 ORTHO05D004439 6.8e-23 114.0 118 58.5
C09p43570 Brassica napus HOM05D003640 ORTHO05D004439 3.4e-22 111.7 220 37.3
RcHm_v2.0_Chr1g0382561 Rosa chinensis HOM05D003640 ORTHO05D004439 5.6e-17 94.4 392 31.4
unitig_37.g11993 Utricularia gibba HOM05D003640 ORTHO05D004439 1.1e-12 80.1 126 39.7
CDE07G0792 Ceratophyllum demersum HOM05D003640 ORTHO05D004439 9.3e-12 77.0 568 23.4
RcHm_v2.0_Chr1g0382631 Rosa chinensis HOM05D003640 ORTHO05D004439 8.7e-10 70.5 427 27.4
Dinv06471 Davidia involucrata HOM05D003640 ORTHO05D004439 1.6e-08 66.2 55 56.4
PSO782G5739 Papaver somniferum HOM05D003640 ORTHO05D004439 2.8e-08 65.5 171 32.7
BolC9t57239H Brassica oleracea HOM05D003640 ORTHO05D004439 6.9e-07 60.8 90 41.1
C09p43560 Brassica napus HOM05D003640 ORTHO05D004439 9.0e-07 60.5 88 42.0


User provided reference genes

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