Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.1e-230 803.1 454 100.0
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 8.2e-162 574.3 454 73.6
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 2.4e-65 253.8 445 44.3
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 6.0e-64 249.2 446 44.6
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 2.3e-63 247.3 443 42.2
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 2.3e-63 247.3 398 42.5
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 4.3e-62 243.0 441 41.0
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 5.6e-62 242.7 451 40.4
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 9.6e-62 241.9 436 41.1
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.1e-61 240.7 410 41.7
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 6.2e-61 239.2 442 42.8
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.8e-60 237.7 443 41.1
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.1e-60 236.9 391 43.2
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 4.0e-60 236.5 436 40.1
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 6.9e-60 235.7 446 40.8
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.9e-60 235.7 389 42.9
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.2e-59 235.0 442 38.9
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 1.5e-59 234.6 446 41.3
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 2.0e-59 234.2 398 42.5
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 7.6e-59 232.3 455 39.1
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 9.9e-59 231.9 445 40.2
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 1.3e-58 231.5 389 47.3
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.3e-58 231.5 468 39.3
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 1.7e-58 231.1 475 38.7
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 1.7e-58 231.1 448 40.6
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 1.7e-58 231.1 437 39.6
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.7e-58 231.1 447 41.4
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 2.2e-58 230.7 476 38.9
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 6.4e-58 229.2 475 38.5
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 6.4e-58 229.2 445 39.6
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 6.4e-58 229.2 443 39.5
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.1e-57 228.4 475 38.3
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 2.4e-57 227.3 443 40.6
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 3.2e-57 226.9 437 39.1
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 4.2e-57 226.5 463 38.2
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 5.4e-57 226.1 400 44.5
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 5.4e-57 226.1 460 40.0
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 7.1e-57 225.7 443 40.6
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 7.1e-57 225.7 474 38.4
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.1e-57 225.7 464 40.1
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 4.6e-56 223.0 393 43.3
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 1.0e-55 221.9 395 43.8
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.3e-55 220.7 443 41.1
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 3.0e-55 220.3 444 39.2
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 3.9e-55 219.9 429 41.0
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 6.7e-55 219.2 390 41.0
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 6.7e-55 219.2 390 41.0
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 6.7e-55 219.2 391 43.7
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 6.7e-55 219.2 443 39.5
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 6.7e-55 219.2 470 38.3
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 6.7e-55 219.2 461 41.4
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 8.7e-55 218.8 390 41.0
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 8.7e-55 218.8 463 37.6
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.1e-54 218.4 459 40.5
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 1.5e-54 218.0 473 41.4
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 1.5e-54 218.0 446 38.3
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 4.3e-54 216.5 407 38.6
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 9.6e-54 215.3 450 38.7
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 3.7e-53 213.4 443 39.1
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 3.7e-53 213.4 463 36.9
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 4.8e-53 213.0 438 38.8
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 1.1e-52 211.8 468 36.5
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.8e-52 211.1 465 37.6
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.8e-52 211.1 386 45.1
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 3.1e-52 210.3 447 37.6
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 3.1e-52 210.3 447 38.5
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 3.1e-52 210.3 461 39.3
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 4.0e-52 209.9 455 37.6
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 6.9e-52 209.1 475 38.5
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 6.9e-52 209.1 476 37.2
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 1.5e-51 208.0 385 42.1
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 1.5e-51 208.0 407 39.3
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 2.0e-51 207.6 389 42.2
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 2.0e-51 207.6 472 37.5
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 2.0e-51 207.6 374 44.1
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.4e-51 206.8 456 38.2
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 4.5e-51 206.5 460 37.4
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 5.8e-51 206.1 382 40.8
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 7.6e-51 205.7 490 36.9
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.7e-50 204.5 455 40.0
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.2e-50 204.1 456 37.9
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 2.9e-50 203.8 407 41.3
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 2.9e-50 203.8 440 39.5
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 3.8e-50 203.4 471 36.1
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 6.4e-50 202.6 379 40.6
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 4.2e-49 199.9 388 37.6
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 1.2e-48 198.4 389 41.4
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 2.7e-48 197.2 477 36.1
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 3.5e-48 196.8 387 40.1
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 4.6e-48 196.4 416 37.5
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 4.6e-48 196.4 445 37.3
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.3e-47 194.9 397 40.3
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.8e-47 194.5 450 37.1
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 1.8e-47 194.5 464 36.4
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 5.1e-47 193.0 451 36.1
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 5.1e-47 193.0 349 41.0
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 2.5e-46 190.7 389 42.4
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 7.4e-46 189.1 475 35.6
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 3.7e-45 186.8 430 36.5
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 5.3e-44 183.0 446 39.9
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 5.3e-44 183.0 446 39.9
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 1.5e-43 181.4 377 35.3
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 7.6e-43 179.1 240 44.2
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.7e-42 177.9 438 37.7
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 1.7e-42 177.9 355 39.4
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 4.9e-42 176.4 515 34.4
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.1e-41 175.3 317 41.3
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.9e-41 174.5 394 37.8
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 3.2e-41 173.7 377 35.0
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 7.1e-41 172.6 384 38.3
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 2.1e-40 171.0 313 42.2
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 4.6e-40 169.9 383 41.8
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 6.0e-40 169.5 313 42.5
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 6.0e-40 169.5 322 43.5
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 2.3e-39 167.5 385 36.1
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 3.0e-39 167.2 317 41.0
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 3.9e-39 166.8 314 44.3
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 5.1e-39 166.4 277 39.0
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.9e-38 164.5 313 40.3
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 8.2e-37 159.1 449 35.6
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 8.2e-37 159.1 212 45.8
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 5.3e-36 156.4 315 38.7
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 2.0e-35 154.5 313 42.5
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 2.9e-34 150.6 316 40.5
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 1.9e-33 147.9 361 38.0
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 7.2e-33 146.0 284 37.0
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 1.6e-32 144.8 446 32.7
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 3.6e-32 143.7 529 31.8
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 4.1e-28 130.2 390 33.3
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 5.3e-28 129.8 513 28.8
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 6.9e-28 129.4 231 39.0
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 2.2e-26 124.4 377 31.6
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 5.0e-26 123.2 228 36.0
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 8.2e-21 105.9 130 45.4
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 8.2e-21 105.9 130 45.4
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 3.5e-19 100.5 145 40.0
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 4.2e-17 93.6 233 37.8
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 6.1e-16 89.7 157 38.9
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 2.4e-12 77.8 246 34.6
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 1.2e-08 65.5 113 37.2
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.0e-07 60.5 78 39.7
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-06 58.5 115 35.7
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 9.7e-06 55.8 149 30.2


User provided reference genes

Program Settings