Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.8e-48 195.7 103 100.0
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.2e-33 146.4 103 73.8
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.9e-21 105.9 102 48.0
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 1.8e-16 89.4 98 45.9
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 3.1e-16 88.6 105 42.9
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 4.0e-16 88.2 94 45.7
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 5.3e-16 87.8 79 53.2
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 5.3e-16 87.8 96 43.8
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 5.3e-16 87.8 102 41.2
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 9.0e-16 87.0 94 45.7
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 1.2e-15 86.7 94 44.7
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 2.0e-15 85.9 94 44.7
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.6e-15 85.5 102 42.2
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 2.6e-15 85.5 101 45.5
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 2.6e-15 85.5 101 45.5
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 3.4e-15 85.1 94 43.6
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 4.4e-15 84.7 94 44.7
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 4.4e-15 84.7 89 47.2
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 4.4e-15 84.7 89 47.2
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 5.8e-15 84.3 94 43.6
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 5.8e-15 84.3 94 43.6
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 5.8e-15 84.3 94 43.6
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 5.8e-15 84.3 79 51.9
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 5.8e-15 84.3 79 51.9
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 5.8e-15 84.3 79 51.9
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 5.8e-15 84.3 88 44.3
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 5.8e-15 84.3 96 39.6
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 7.6e-15 84.0 94 43.6
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 7.6e-15 84.0 94 43.6
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 9.9e-15 83.6 103 41.7
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.7e-14 82.8 103 40.8
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 1.7e-14 82.8 78 51.3
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.7e-14 82.8 90 48.9
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 2.2e-14 82.4 78 51.3
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.2e-14 82.4 101 43.6
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 2.2e-14 82.4 96 43.8
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 2.9e-14 82.0 98 40.8
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 2.9e-14 82.0 78 51.3
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 3.8e-14 81.6 78 51.3
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 4.9e-14 81.3 106 41.5
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 4.9e-14 81.3 79 51.9
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 6.4e-14 80.9 78 50.0
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 6.4e-14 80.9 78 50.0
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 6.4e-14 80.9 88 44.3
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 8.4e-14 80.5 78 47.4
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 8.4e-14 80.5 79 49.4
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 8.4e-14 80.5 101 42.6
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.1e-13 80.1 78 44.9
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.1e-13 80.1 88 45.5
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 1.1e-13 80.1 78 51.3
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 1.9e-13 79.3 100 42.0
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 1.9e-13 79.3 97 43.3
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.9e-13 79.3 107 41.1
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.9e-13 79.3 79 48.1
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.4e-13 79.0 78 44.9
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.4e-13 79.0 78 44.9
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 2.4e-13 79.0 79 46.8
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 2.4e-13 79.0 78 48.7
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 3.2e-13 78.6 102 42.2
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 3.2e-13 78.6 79 49.4
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 3.2e-13 78.6 78 48.7
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 3.2e-13 78.6 78 47.4
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 4.2e-13 78.2 78 48.7
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 4.2e-13 78.2 96 42.7
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 4.2e-13 78.2 78 50.0
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 4.2e-13 78.2 78 48.7
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 4.2e-13 78.2 97 41.2
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 4.2e-13 78.2 97 40.2
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 5.4e-13 77.8 78 48.7
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 5.4e-13 77.8 97 40.2
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 5.4e-13 77.8 101 41.6
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 7.1e-13 77.4 78 47.4
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 7.1e-13 77.4 97 42.3
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 7.1e-13 77.4 78 47.4
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 9.3e-13 77.0 78 47.4
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 9.3e-13 77.0 79 46.8
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 9.3e-13 77.0 94 41.5
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 9.3e-13 77.0 79 48.1
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.2e-12 76.6 89 44.9
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.2e-12 76.6 89 44.9
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 1.2e-12 76.6 97 41.2
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.2e-12 76.6 87 43.7
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 1.6e-12 76.3 79 49.4
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.6e-12 76.3 89 44.9
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 1.6e-12 76.3 98 41.8
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.6e-12 76.3 78 46.2
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.1e-12 75.9 101 38.6
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 2.1e-12 75.9 78 50.0
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 2.1e-12 75.9 94 42.6
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.1e-12 75.9 79 49.4
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 2.1e-12 75.9 78 48.7
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.1e-12 75.9 94 41.5
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 2.1e-12 75.9 87 43.7
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 3.5e-12 75.1 78 50.0
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 3.5e-12 75.1 78 47.4
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.5e-12 75.1 78 47.4
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 4.6e-12 74.7 78 48.7
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 4.6e-12 74.7 79 48.1
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 4.6e-12 74.7 87 44.8
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 6.0e-12 74.3 96 41.7
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 6.0e-12 74.3 78 47.4
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 6.0e-12 74.3 78 47.4
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 6.0e-12 74.3 78 47.4
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 6.0e-12 74.3 78 47.4
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 7.8e-12 73.9 101 39.6
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 1.0e-11 73.6 79 43.0
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.0e-11 73.6 78 44.9
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.0e-11 73.6 107 39.3
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.0e-11 73.6 78 44.9
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.0e-11 73.6 78 46.2
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 1.0e-11 73.6 78 46.2
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.0e-11 73.6 78 46.2
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.0e-11 73.6 78 44.9
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 1.3e-11 73.2 78 48.7
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 1.3e-11 73.2 78 46.2
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 1.7e-11 72.8 78 47.4
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.3e-11 72.4 78 48.7
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 2.3e-11 72.4 89 43.8
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 2.3e-11 72.4 78 44.9
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 2.3e-11 72.4 78 44.9
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 2.3e-11 72.4 78 47.4
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 2.3e-11 72.4 96 38.5
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 3.0e-11 72.0 78 47.4
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 3.9e-11 71.6 78 46.2
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 3.9e-11 71.6 78 47.4
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 5.1e-11 71.2 78 46.2
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 5.1e-11 71.2 94 39.4
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 6.6e-11 70.9 78 46.2
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 6.6e-11 70.9 78 43.6
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 8.7e-11 70.5 123 34.1
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 8.7e-11 70.5 87 39.1
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 8.7e-11 70.5 78 48.7
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 8.7e-11 70.5 78 43.6
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.1e-10 70.1 78 46.2
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 1.9e-10 69.3 118 35.6
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 2.5e-10 68.9 78 43.6
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 3.3e-10 68.6 85 43.5
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 4.3e-10 68.2 78 41.0
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 5.6e-10 67.8 78 48.7
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 7.3e-10 67.4 90 33.3
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 7.3e-10 67.4 87 41.4
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 9.6e-10 67.0 72 43.1
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 1.6e-09 66.2 78 41.0
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 4.8e-09 64.7 78 43.6
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 2.0e-07 59.3 57 50.9
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 5.8e-07 57.8 57 49.1
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 9.9e-07 57.0 58 46.6
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 9.9e-07 57.0 101 31.7
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 1.3e-06 56.6 58 48.3
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 1.3e-06 56.6 58 46.6
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 2.9e-06 55.5 58 46.6
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 3.8e-06 55.1 64 42.2
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 4.9e-06 54.7 58 46.6


User provided reference genes

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