Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_11650 Physcomitrium patens HOM05D002393 ORTHO05D318028 5.7e-46 187.2 92 100.0
Pp3c17_7100 Physcomitrium patens HOM05D002393 ORTHO05D002845 1.1e-09 66.6 68 52.9
Pp3c14_11740 Physcomitrium patens HOM05D002393 ORTHO05D002845 9.5e-09 63.5 55 61.8
Manes.15G099300 Manihot esculenta HOM05D002393 ORTHO05D002845 1.2e-08 63.2 58 58.6
Potri.006G071000 Populus trichocarpa HOM05D002393 ORTHO05D002845 2.1e-08 62.4 58 56.9
MBI13_g31562_MAGBIO Magnolia biondii HOM05D002393 ORTHO05D002845 2.8e-08 62.0 94 44.7
Glyma.09G270100 Glycine max HOM05D002393 ORTHO05D002845 3.6e-08 61.6 81 48.1
Nn5g26732 Nelumbo nucifera HOM05D002393 ORTHO05D002845 3.6e-08 61.6 72 50.0
PSO063G2128 Papaver somniferum HOM05D002393 ORTHO05D002845 3.6e-08 61.6 58 58.6
PSO170G5278 Papaver somniferum HOM05D002393 ORTHO05D002845 3.6e-08 61.6 58 58.6
Hund05471 Selenicereus undatus HOM05D002393 ORTHO05D002845 3.6e-08 61.6 58 56.9
MELO3C009088.2 Cucumis melo HOM05D002393 ORTHO05D002845 4.7e-08 61.2 81 48.1
Gohir.A08G080800 Gossypium hirsutum HOM05D002393 ORTHO05D002845 4.7e-08 61.2 72 50.0
Gohir.D08G090900 Gossypium hirsutum HOM05D002393 ORTHO05D002845 4.7e-08 61.2 72 50.0
Gorai.004G096200 Gossypium raimondii HOM05D002393 ORTHO05D002845 4.7e-08 61.2 72 50.0
ClCG10G022930 Citrullus lanatus HOM05D002393 ORTHO05D002845 6.1e-08 60.8 81 48.1
Ciclev10011843m.g Citrus clementina HOM05D002393 ORTHO05D002845 6.1e-08 60.8 81 48.1
Peaxi162Scf00374g00622 Petunia axillaris HOM05D002393 ORTHO05D002845 6.1e-08 60.8 76 50.0
Cc06_g00040 Coffea canephora HOM05D002393 ORTHO05D002845 8.0e-08 60.5 72 48.6
Potri.018G132700 Populus trichocarpa HOM05D002393 ORTHO05D002845 8.0e-08 60.5 58 55.2
Sabra18G0112400 Salix brachista HOM05D002393 ORTHO05D002845 8.0e-08 60.5 58 55.2
Mapoly0135s0021 Marchantia polymorpha HOM05D002393 ORTHO05D002845 1.0e-07 60.1 50 64.0
PSO339G5436 Papaver somniferum HOM05D002393 ORTHO05D002845 1.0e-07 60.1 58 55.2
PSO384G2806 Papaver somniferum HOM05D002393 ORTHO05D002845 1.0e-07 60.1 58 55.2
Psat3g116800 Pisum sativum HOM05D002393 ORTHO05D002845 1.0e-07 60.1 58 55.2
Sabra06G0052900 Salix brachista HOM05D002393 ORTHO05D002845 1.0e-07 60.1 55 58.2
Aa31LG5G23240 Aethionema arabicum HOM05D002393 ORTHO05D002845 1.8e-07 59.3 58 55.2
arahy.Tifrunner.gnm1.ann1.FGF3C7 Arachis hypogaea HOM05D002393 ORTHO05D002845 1.8e-07 59.3 74 45.9
arahy.Tifrunner.gnm1.ann1.NJ2U5L Arachis hypogaea HOM05D002393 ORTHO05D002845 1.8e-07 59.3 74 45.9
Lj5C708G6 Lonicera japonica HOM05D002393 ORTHO05D002845 1.8e-07 59.3 72 48.6
Nitab4.5_0002139g0050 Nicotiana tabacum HOM05D002393 ORTHO05D002845 1.8e-07 59.3 76 48.7
Sc02g0000090 Simmondsia chinensis HOM05D002393 ORTHO05D002845 1.8e-07 59.3 58 55.2
SGA_v2.0_scaffold240G44056 Striga asiatica HOM05D002393 ORTHO05D002845 1.8e-07 59.3 76 50.0
Actinidia02488 Actinidia chinensis HOM05D002393 ORTHO05D002845 2.3e-07 58.9 55 56.4
Actinidia20811 Actinidia chinensis HOM05D002393 ORTHO05D002845 2.3e-07 58.9 72 48.6
CiPaw.10G167300 Carya illinoinensis HOM05D002393 ORTHO05D002845 2.3e-07 58.9 72 47.2
Haze_19039 Corylus avellana HOM05D002393 ORTHO05D002845 2.3e-07 58.9 67 53.7
CsaV3_3G032910 Cucumis sativus L. HOM05D002393 ORTHO05D002845 2.3e-07 58.9 81 46.9
Lj1g0019495 Lotus japonicus HOM05D002393 ORTHO05D002845 2.3e-07 58.9 72 47.2
Sabra04G0159500 Salix brachista HOM05D002393 ORTHO05D002845 2.3e-07 58.9 81 48.1
Sed0006540 Sechium edule HOM05D002393 ORTHO05D002845 2.3e-07 58.9 81 46.9
vmacro20794 Vaccinium macrocarpon HOM05D002393 ORTHO05D002845 2.3e-07 58.9 75 49.3
CDE04G1173 Ceratophyllum demersum HOM05D002393 ORTHO05D002845 3.0e-07 58.5 53 58.5
Eucgr.C02186 Eucalyptus grandis HOM05D002393 ORTHO05D002845 3.0e-07 58.5 52 61.5
Glyma.18G220000 Glycine max HOM05D002393 ORTHO05D002845 3.0e-07 58.5 53 58.5
Lsat_1_v5_gn_9_40221 Lactuca sativa HOM05D002393 ORTHO05D002845 3.0e-07 58.5 76 47.4
Phvul.008G077100 Phaseolus vulgaris HOM05D002393 ORTHO05D002845 3.0e-07 58.5 81 46.9
QL07p030298 Quercus lobata HOM05D002393 ORTHO05D002845 3.0e-07 58.5 58 55.2
QL07p030692 Quercus lobata HOM05D002393 ORTHO05D002845 3.0e-07 58.5 58 55.2
Thecc.09G189300 Theobroma cacao HOM05D002393 ORTHO05D002845 3.0e-07 58.5 55 58.2
unitig_0.g2549 Utricularia gibba HOM05D002393 ORTHO05D002845 3.0e-07 58.5 58 56.9
Atru.chr12.2075 Acer truncatum HOM05D002393 ORTHO05D002845 4.0e-07 58.2 72 48.6
Actinidia31884 Actinidia chinensis HOM05D002393 ORTHO05D002845 4.0e-07 58.2 55 56.4
Aqoxy6G03066 Aquilegia oxysepala HOM05D002393 ORTHO05D002845 4.0e-07 58.2 51 62.7
EL10Ac7g17651 Beta vulgaris HOM05D002393 ORTHO05D002845 4.0e-07 58.2 58 53.4
ECA247G0468 Erigeron canadensis HOM05D002393 ORTHO05D002845 4.0e-07 58.2 76 48.7
MBI16_g18200_MAGBIO Magnolia biondii HOM05D002393 ORTHO05D002845 4.0e-07 58.2 62 56.5
PGR031G0549 Punica granatum HOM05D002393 ORTHO05D002845 4.0e-07 58.2 58 53.4
Rhsim01G0113300 Rhododendron simsii HOM05D002393 ORTHO05D002845 4.0e-07 58.2 55 58.2
THA.LOC104823342 Tarenaya hassleriana HOM05D002393 ORTHO05D002845 4.0e-07 58.2 51 60.8
Atru.chr8.24 Acer truncatum HOM05D002393 ORTHO05D002845 5.2e-07 57.8 81 45.7
AUR62008767 Chenopodium quinoa HOM05D002393 ORTHO05D002845 5.2e-07 57.8 58 53.4
AUR62025471 Chenopodium quinoa HOM05D002393 ORTHO05D002845 5.2e-07 57.8 58 53.4
Duzib150G0552 Durio zibethinus HOM05D002393 ORTHO05D002845 5.2e-07 57.8 55 58.2
Duzib168G1798 Durio zibethinus HOM05D002393 ORTHO05D002845 5.2e-07 57.8 55 56.4
TAR636G1587 Trochodendron aralioides HOM05D002393 ORTHO05D002845 5.2e-07 57.8 52 61.5
GSVIVG01029831001 Vitis vinifera HOM05D002393 ORTHO05D002845 5.2e-07 57.8 55 58.2
GSVIVG01035161001 Vitis vinifera HOM05D002393 ORTHO05D002845 5.2e-07 57.8 56 57.1
MSTRG.18920 Avicennia marina HOM05D002393 ORTHO05D002845 6.8e-07 57.4 76 48.7
CANSAT21G2069 Cannabis sativa HOM05D002393 ORTHO05D002845 6.8e-07 57.4 58 55.2
Duzib151G0012 Durio zibethinus HOM05D002393 ORTHO05D002845 6.8e-07 57.4 58 53.4
Gohir.D02G000900 Gossypium hirsutum HOM05D002393 ORTHO05D002845 6.8e-07 57.4 58 53.4
Gorai.005G001400 Gossypium raimondii HOM05D002393 ORTHO05D002845 6.8e-07 57.4 58 53.4
HanXRQChr10g0286531 Helianthus annuus HOM05D002393 ORTHO05D002845 6.8e-07 57.4 76 48.7
Potri.016G143600 Populus trichocarpa HOM05D002393 ORTHO05D002845 6.8e-07 57.4 51 62.7
VMungo1383G3687 Vigna mungo HOM05D002393 ORTHO05D002845 6.8e-07 57.4 53 58.5
Cpa.g.sc115.43 Carica papaya HOM05D002393 ORTHO05D002845 8.9e-07 57.0 55 58.2
CDE06G0108 Ceratophyllum demersum HOM05D002393 ORTHO05D002845 8.9e-07 57.0 58 55.2
ECA234G3030 Erigeron canadensis HOM05D002393 ORTHO05D002845 8.9e-07 57.0 67 50.7
MD04G1180800 Malus domestica HOM05D002393 ORTHO05D002845 8.9e-07 57.0 76 48.7
Nitab4.5_0003037g0060 Nicotiana tabacum HOM05D002393 ORTHO05D002845 8.9e-07 57.0 72 45.8
Os10g0387000 Oryza sativa ssp. japonica HOM05D002393 ORTHO05D002845 8.9e-07 57.0 96 37.5
SalBow6G3390 Salvia bowleyana HOM05D002393 ORTHO05D002845 8.9e-07 57.0 55 56.4
Aqoxy7G02680 Aquilegia oxysepala HOM05D002393 ORTHO05D002845 1.2e-06 56.6 53 62.3
Ca_07806_v3 Cicer arietinum L. HOM05D002393 ORTHO05D002845 1.2e-06 56.6 81 45.7
Ca_30623_v3 Cicer arietinum L. HOM05D002393 ORTHO05D002845 1.2e-06 56.6 81 45.7
HanXRQChr15g0464641 Helianthus annuus HOM05D002393 ORTHO05D002845 1.2e-06 56.6 51 60.8
Hma1.2p1_0022F.1_g014770 Hydrangea macrophylla HOM05D002393 ORTHO05D002845 1.2e-06 56.6 50 60.0
Lj2A53G26 Lonicera japonica HOM05D002393 ORTHO05D002845 1.2e-06 56.6 51 60.8
Lalb_Chr19g0123871 Lupinus albus HOM05D002393 ORTHO05D002845 1.2e-06 56.6 72 44.4
AL4G35950 Arabidopsis lyrata HOM05D002393 ORTHO05D002845 1.5e-06 56.2 58 51.7
DCAR_019824 Daucus carota HOM05D002393 ORTHO05D002845 1.5e-06 56.2 67 50.7
Eucgr.K01317 Eucalyptus grandis HOM05D002393 ORTHO05D002845 1.5e-06 56.2 58 53.4
FvH4_6g09110 Fragaria vesca HOM05D002393 ORTHO05D002845 1.5e-06 56.2 59 55.9
FAN02G0474 Fragaria x ananassa HOM05D002393 ORTHO05D002845 1.5e-06 56.2 59 55.9
FAN05G3430 Fragaria x ananassa HOM05D002393 ORTHO05D002845 1.5e-06 56.2 59 55.9
FAN09G4718 Fragaria x ananassa HOM05D002393 ORTHO05D002845 1.5e-06 56.2 59 55.9
FAN14G4486 Fragaria x ananassa HOM05D002393 ORTHO05D002845 1.5e-06 56.2 59 55.9
Medtr7g074620 Medicago truncatula HOM05D002393 ORTHO05D002845 1.5e-06 56.2 58 53.4
RcHm_v2.0_Chr3g0459321 Rosa chinensis HOM05D002393 ORTHO05D002845 1.5e-06 56.2 59 55.9
Sabra06G0088800 Salix brachista HOM05D002393 ORTHO05D002845 1.5e-06 56.2 53 58.5
SEGI_16482 Sequoiadendron giganteum HOM05D002393 ORTHO05D002845 1.5e-06 56.2 63 54.0
TPR.G856 Trifolium pratense HOM05D002393 ORTHO05D002845 1.5e-06 56.2 58 53.4
TAR369G0177 Trochodendron aralioides HOM05D002393 ORTHO05D002845 1.5e-06 56.2 58 55.2
AT2G38670 Arabidopsis thaliana HOM05D002393 ORTHO05D002845 2.0e-06 55.8 58 51.7
CSS0013553 Camellia sinensis var. sinensis HOM05D002393 ORTHO05D002845 2.0e-06 55.8 76 48.7
Dinv16917 Davidia involucrata HOM05D002393 ORTHO05D002845 2.0e-06 55.8 53 56.6
Migut.J00823 Erythranthe guttata HOM05D002393 ORTHO05D002845 2.0e-06 55.8 55 56.4
MD16G1241200 Malus domestica HOM05D002393 ORTHO05D002845 2.0e-06 55.8 58 53.4
SMO365G0037 Selaginella moellendorffii HOM05D002393 ORTHO05D002845 2.0e-06 55.8 55 52.7
A05p07440 Brassica napus HOM05D002393 ORTHO05D002845 2.6e-06 55.5 58 51.7
C04p08900 Brassica napus HOM05D002393 ORTHO05D002845 2.6e-06 55.5 58 51.7
BolC4t22479H Brassica oleracea HOM05D002393 ORTHO05D002845 2.6e-06 55.5 58 51.7
BraA05t19709Z Brassica rapa HOM05D002393 ORTHO05D002845 2.6e-06 55.5 58 51.7
Carub.0004s2065 Capsella rubella HOM05D002393 ORTHO05D002845 2.6e-06 55.5 58 51.7
CARHR133340 Cardamine hirsuta HOM05D002393 ORTHO05D002845 2.6e-06 55.5 58 51.7
Cfa016979 Carpinus fangiana HOM05D002393 ORTHO05D002845 2.6e-06 55.5 53 56.6
CiPaw.15G154700 Carya illinoinensis HOM05D002393 ORTHO05D002845 2.6e-06 55.5 67 52.2
COL.COLO4_24834 Corchorus olitorius HOM05D002393 ORTHO05D002845 2.6e-06 55.5 72 47.2
Haze_21227 Corylus avellana HOM05D002393 ORTHO05D002845 2.6e-06 55.5 53 56.6
Thhalv10016709m.g Eutrema salsugineum HOM05D002393 ORTHO05D002845 2.6e-06 55.5 58 51.7
Nn8g41072 Nelumbo nucifera HOM05D002393 ORTHO05D002845 2.6e-06 55.5 49 61.2
Os08g0224800 Oryza sativa ssp. japonica HOM05D002393 ORTHO05D002845 2.6e-06 55.5 96 37.5
Prupe.1G067900 Prunus persica HOM05D002393 ORTHO05D002845 2.6e-06 55.5 55 54.5
Sp4g21010 Schrenkiella parvula HOM05D002393 ORTHO05D002845 2.6e-06 55.5 58 51.7
Zm00001eb414050 Zea mays HOM05D002393 ORTHO05D002845 2.6e-06 55.5 88 43.2
Aqoxy4G03321 Aquilegia oxysepala HOM05D002393 ORTHO05D002845 3.4e-06 55.1 51 60.8
EL10Ac8g18325 Beta vulgaris HOM05D002393 ORTHO05D002845 3.4e-06 55.1 67 46.3
ECA240G1463 Erigeron canadensis HOM05D002393 ORTHO05D002845 3.4e-06 55.1 72 47.2
HanXRQChr05g0131911 Helianthus annuus HOM05D002393 ORTHO05D002845 3.4e-06 55.1 96 41.7
MD12G1196100 Malus domestica HOM05D002393 ORTHO05D002845 3.4e-06 55.1 76 48.7
Potri.006G113900 Populus trichocarpa HOM05D002393 ORTHO05D002845 3.4e-06 55.1 58 53.4
Ca_17411_v3 Cicer arietinum L. HOM05D002393 ORTHO05D002845 4.4e-06 54.7 48 62.5
ClCG06G014010 Citrullus lanatus HOM05D002393 ORTHO05D002845 4.4e-06 54.7 50 60.0
MELO3C017389.2 Cucumis melo HOM05D002393 ORTHO05D002845 4.4e-06 54.7 50 60.0
CsaV3_1G032230 Cucumis sativus L. HOM05D002393 ORTHO05D002845 4.4e-06 54.7 50 60.0
MD13G1236200 Malus domestica HOM05D002393 ORTHO05D002845 4.4e-06 54.7 55 56.4
Nitab4.5_0000833g0020 Nicotiana tabacum HOM05D002393 ORTHO05D002845 4.4e-06 54.7 50 58.0
Peaxi162Scf00315g00815 Petunia axillaris HOM05D002393 ORTHO05D002845 4.4e-06 54.7 50 58.0
Prupe.6G300600 Prunus persica HOM05D002393 ORTHO05D002845 4.4e-06 54.7 53 56.6
SEGI_38858 Sequoiadendron giganteum HOM05D002393 ORTHO05D002845 4.4e-06 54.7 48 62.5
Solyc05g046300.3 Solanum lycopersicum HOM05D002393 ORTHO05D002845 4.4e-06 54.7 50 58.0
Sopen00g006200 Solanum pennellii HOM05D002393 ORTHO05D002845 4.4e-06 54.7 50 58.0
TPR.G25447 Trifolium pratense HOM05D002393 ORTHO05D002845 4.4e-06 54.7 48 62.5
HPP92_019036 Vanilla planifolia HOM05D002393 ORTHO05D002845 4.4e-06 54.7 48 62.5
ATR1127G128 Amborella trichopoda HOM05D002393 ORTHO05D002845 5.7e-06 54.3 51 58.8
AUR62021339 Chenopodium quinoa HOM05D002393 ORTHO05D002845 5.7e-06 54.3 67 46.3
AUR62033254 Chenopodium quinoa HOM05D002393 ORTHO05D002845 5.7e-06 54.3 55 52.7
DCAR_015319 Daucus carota HOM05D002393 ORTHO05D002845 5.7e-06 54.3 48 62.5
Lalb_Chr05g0223701 Lupinus albus HOM05D002393 ORTHO05D002845 5.7e-06 54.3 57 54.4
Peaxi162Scf00889g00228 Petunia axillaris HOM05D002393 ORTHO05D002845 5.7e-06 54.3 55 54.5
PGSC0003DMG400013703 Solanum tuberosum HOM05D002393 ORTHO05D002845 5.7e-06 54.3 48 58.3
Ciclev10011809m.g Citrus clementina HOM05D002393 ORTHO05D002845 7.5e-06 53.9 50 58.0
Cc00_g16160 Coffea canephora HOM05D002393 ORTHO05D002845 7.5e-06 53.9 55 52.7
Lsat_1_v5_gn_5_78880 Lactuca sativa HOM05D002393 ORTHO05D006188 7.5e-06 53.9 67 49.3
Os11g0123400 Oryza sativa ssp. japonica HOM05D002393 ORTHO05D002845 7.5e-06 53.9 48 62.5
Os12g0121300 Oryza sativa ssp. japonica HOM05D002393 ORTHO05D002845 7.5e-06 53.9 48 62.5
Pp3c17_7160 Physcomitrium patens HOM05D002393 ORTHO05D002845 7.5e-06 53.9 48 54.2
PGR044G0465 Punica granatum HOM05D002393 ORTHO05D002845 7.5e-06 53.9 50 62.0
HPP92_021990 Vanilla planifolia HOM05D002393 ORTHO05D002845 7.5e-06 53.9 50 56.0
Zm00001eb093730 Zea mays HOM05D002393 ORTHO05D002845 7.5e-06 53.9 48 62.5
Zm00001eb195630 Zea mays HOM05D002393 ORTHO05D002845 7.5e-06 53.9 48 62.5
HanXRQChr03g0067211 Helianthus annuus HOM05D002393 ORTHO05D002845 9.8e-06 53.5 49 59.2
Nitab4.5_0000053g0190 Nicotiana tabacum HOM05D002393 ORTHO05D002845 9.8e-06 53.5 55 52.7
Phvul.002G303400 Phaseolus vulgaris HOM05D002393 ORTHO05D002845 9.8e-06 53.5 48 60.4


User provided reference genes

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