Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 6.0e-49 197.2 100 100.0
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.5e-39 165.2 98 82.7
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.4e-34 148.7 98 68.4
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 9.2e-34 146.7 101 67.3
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 6.6e-32 140.6 98 62.2
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 8.7e-32 140.2 95 68.4
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 2.1e-25 119.0 101 59.4
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 3.9e-24 114.8 101 57.4
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 3.9e-24 114.8 101 56.4
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 6.6e-24 114.0 97 55.7
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 6.6e-24 114.0 102 56.9
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 6.6e-24 114.0 102 56.9
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 1.5e-23 112.8 100 55.0
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 1.5e-23 112.8 100 56.0
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 1.9e-23 112.5 101 55.4
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 1.9e-23 112.5 100 56.0
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 2.5e-23 112.1 98 54.1
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 2.5e-23 112.1 99 58.6
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 2.5e-23 112.1 102 53.9
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 4.3e-23 111.3 101 55.4
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 4.3e-23 111.3 101 59.4
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 5.6e-23 110.9 98 58.2
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 5.6e-23 110.9 96 55.2
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 5.6e-23 110.9 99 61.6
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 7.3e-23 110.5 99 57.6
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 7.3e-23 110.5 102 54.9
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 7.3e-23 110.5 98 55.1
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 7.3e-23 110.5 98 55.1
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 7.3e-23 110.5 98 55.1
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 7.3e-23 110.5 100 55.0
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 1.3e-22 109.8 98 56.1
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 1.6e-22 109.4 98 54.1
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 1.6e-22 109.4 99 54.5
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.1e-22 109.0 98 54.1
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 2.1e-22 109.0 98 54.1
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 2.1e-22 109.0 100 53.0
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 2.1e-22 109.0 100 53.0
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 2.8e-22 108.6 98 53.1
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 2.8e-22 108.6 101 54.5
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 3.6e-22 108.2 99 53.5
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 3.6e-22 108.2 99 53.5
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 3.6e-22 108.2 99 53.5
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 3.6e-22 108.2 99 53.5
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 3.6e-22 108.2 100 54.0
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 3.6e-22 108.2 102 54.9
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 4.8e-22 107.8 99 53.5
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 6.2e-22 107.5 99 53.5
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 6.2e-22 107.5 98 52.0
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 6.2e-22 107.5 100 58.0
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 6.2e-22 107.5 99 52.5
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 6.2e-22 107.5 99 55.6
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 6.2e-22 107.5 101 52.5
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 8.1e-22 107.1 101 58.4
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 8.1e-22 107.1 99 59.6
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 8.1e-22 107.1 101 58.4
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 1.1e-21 106.7 100 52.0
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.1e-21 106.7 99 53.5
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 1.4e-21 106.3 99 51.5
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 1.4e-21 106.3 99 53.5
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 1.4e-21 106.3 103 54.4
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 1.8e-21 105.9 101 57.4
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 2.4e-21 105.5 100 54.0
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 3.1e-21 105.1 99 51.5
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 3.1e-21 105.1 99 51.5
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 3.1e-21 105.1 99 51.5
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 3.1e-21 105.1 100 52.0
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 4.0e-21 104.8 98 54.1
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 4.0e-21 104.8 99 50.5
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 4.0e-21 104.8 98 53.1
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 4.0e-21 104.8 98 53.1
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 6.9e-21 104.0 99 50.5
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 6.9e-21 104.0 105 53.3
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 9.0e-21 103.6 98 52.0
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 1.2e-20 103.2 99 50.5
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 1.2e-20 103.2 97 59.8
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 2.6e-20 102.1 99 51.5
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 2.6e-20 102.1 99 51.5
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 3.4e-20 101.7 100 51.0
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 4.5e-20 101.3 96 52.1
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 4.5e-20 101.3 98 53.1
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 5.8e-20 100.9 99 49.5
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 7.6e-20 100.5 94 52.1
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 7.6e-20 100.5 99 51.5
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 1.3e-19 99.8 93 53.8
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 1.3e-19 99.8 96 51.0
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 2.9e-19 98.6 106 54.7
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 6.4e-19 97.4 96 50.0
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 8.4e-19 97.1 100 49.0
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 8.4e-19 97.1 100 47.0
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 1.1e-18 96.7 94 50.0
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 1.4e-18 96.3 100 49.0
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.9e-18 95.9 101 50.5
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 2.4e-18 95.5 103 48.5
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 4.2e-18 94.7 106 52.8
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 5.4e-18 94.4 100 50.0
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 9.3e-18 93.6 101 48.5
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 9.3e-18 93.6 97 49.5
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 9.3e-18 93.6 96 45.8
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 1.2e-17 93.2 102 47.1
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 1.2e-17 93.2 93 52.7
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 2.7e-17 92.0 99 47.5
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 3.5e-17 91.7 99 46.5
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 1.0e-16 90.1 89 50.6
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 1.0e-16 90.1 100 46.0
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 1.3e-16 89.7 93 50.5
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 3.0e-16 88.6 101 47.5
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 8.7e-16 87.0 93 44.1
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 3.3e-15 85.1 98 46.9
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 4.3e-15 84.7 91 48.4
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 9.6e-15 83.6 98 48.0
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 1.3e-14 83.2 66 57.6
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 2.1e-14 82.4 88 47.7
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 2.1e-14 82.4 88 47.7
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 2.8e-14 82.0 103 44.7
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 4.8e-14 81.3 86 47.7
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 6.2e-14 80.9 65 56.9
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 8.1e-14 80.5 86 46.5
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 1.1e-13 80.1 93 45.2
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 2.4e-13 79.0 98 45.9
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 1.5e-12 76.3 93 45.2
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 5.8e-12 74.3 69 52.2
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 2.3e-08 62.4 90 38.9
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 1.6e-06 56.2 96 35.4
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 4.8e-06 54.7 52 46.2


User provided reference genes

Program Settings