Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_10610 Physcomitrium patens HOM05D006134 ORTHO05D007671 5.8e-86 320.9 161 100.0
Pp3c14_10611 Physcomitrium patens HOM05D006134 ORTHO05D007671 5.8e-86 320.9 161 100.0
Mapoly0028s0104 Marchantia polymorpha HOM05D006134 ORTHO05D007671 2.1e-56 222.6 119 85.7
SMO367G0732 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 1.3e-50 203.4 146 66.4
CDE04G1640 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 4.0e-47 191.8 122 69.7
TAR376G1190 Trochodendron aralioides HOM05D006134 ORTHO05D007671 9.0e-47 190.7 123 68.3
ATR0730G227 Amborella trichopoda HOM05D006134 ORTHO05D007671 1.2e-46 190.3 122 69.7
Nn6g31911 Nelumbo nucifera HOM05D006134 ORTHO05D007671 1.2e-46 190.3 123 68.3
Glyma.11G156931 Glycine max HOM05D006134 ORTHO05D007671 4.9e-45 184.9 123 69.1
CDE02G2427 Ceratophyllum demersum HOM05D006134 ORTHO05D007671 6.4e-45 184.5 122 67.2
Atru.chr9.1880 Acer truncatum HOM05D006134 ORTHO05D007671 8.4e-45 184.1 123 67.5
CBR_g12196 Chara braunii HOM05D006134 ORTHO05D007671 8.4e-45 184.1 148 65.5
Ciclev10029589m.g Citrus clementina HOM05D006134 ORTHO05D007671 1.1e-44 183.7 123 67.5
VMungo1080G1627 Vigna mungo HOM05D006134 ORTHO05D007671 1.1e-44 183.7 122 68.9
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 1.4e-44 183.3 122 68.0
Medtr3g082190 Medicago truncatula HOM05D006134 ORTHO05D007671 1.4e-44 183.3 123 67.5
Psat5g110600 Pisum sativum HOM05D006134 ORTHO05D007671 1.9e-44 183.0 122 68.0
TAR628G0583 Trochodendron aralioides HOM05D006134 ORTHO05D007671 2.4e-44 182.6 123 65.0
Ca_17958_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 5.5e-44 181.4 123 66.7
Phvul.005G034200 Phaseolus vulgaris HOM05D006134 ORTHO05D007671 7.1e-44 181.0 123 66.7
arahy.Tifrunner.gnm1.ann1.PD8D7M Arachis hypogaea HOM05D006134 ORTHO05D007671 9.3e-44 180.6 122 68.0
Lj6g0003235 Lotus japonicus HOM05D006134 ORTHO05D007671 9.3e-44 180.6 123 66.7
arahy.Tifrunner.gnm1.ann1.A6PCA1 Arachis hypogaea HOM05D006134 ORTHO05D007671 1.2e-43 180.3 122 68.0
CANSAT80G1040 Cannabis sativa HOM05D006134 ORTHO05D007671 1.2e-43 180.3 122 68.0
HanXRQChr12g0383651 Helianthus annuus HOM05D006134 ORTHO05D007671 1.6e-43 179.9 122 66.4
Dinv21074 Davidia involucrata HOM05D006134 ORTHO05D007671 2.1e-43 179.5 122 66.4
CSS0027024 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 2.7e-43 179.1 122 65.6
Haze_00699 Corylus avellana HOM05D006134 ORTHO05D007671 2.7e-43 179.1 122 68.0
ECA247G3382 Erigeron canadensis HOM05D006134 ORTHO05D007671 2.7e-43 179.1 122 65.6
Lalb_Chr10g0093471 Lupinus albus HOM05D006134 ORTHO05D007671 2.7e-43 179.1 122 66.4
Lalb_Chr10g0093491 Lupinus albus HOM05D006134 ORTHO05D007671 2.7e-43 179.1 122 66.4
QL11p052022 Quercus lobata HOM05D006134 ORTHO05D007671 2.7e-43 179.1 121 66.9
QL11p052248 Quercus lobata HOM05D006134 ORTHO05D007671 2.7e-43 179.1 121 66.9
GSVIVG01023976001 Vitis vinifera HOM05D006134 ORTHO05D007671 2.7e-43 179.1 122 65.6
Cc02_g30030 Coffea canephora HOM05D006134 ORTHO05D007671 3.5e-43 178.7 123 66.7
Lsat_1_v5_gn_1_25060 Lactuca sativa HOM05D006134 ORTHO05D007671 3.5e-43 178.7 121 66.1
AUR62021421 Chenopodium quinoa HOM05D006134 ORTHO05D007671 4.6e-43 178.3 122 64.8
CSS0024749 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 6.0e-43 177.9 122 66.4
CSS0037732 Camellia sinensis var. sinensis HOM05D006134 ORTHO05D007671 6.0e-43 177.9 122 66.4
Peaxi162Scf00359g00813 Petunia axillaris HOM05D006134 ORTHO05D007671 6.0e-43 177.9 122 64.8
RcHm_v2.0_Chr7g0212881 Rosa chinensis HOM05D006134 ORTHO05D007671 6.0e-43 177.9 117 70.1
Sed0025018 Sechium edule HOM05D006134 ORTHO05D007671 7.9e-43 177.6 122 65.6
EL10Ac9g21342 Beta vulgaris HOM05D006134 ORTHO05D007671 1.3e-42 176.8 122 64.8
Manes.11G097800 Manihot esculenta HOM05D006134 ORTHO05D007671 1.3e-42 176.8 117 67.5
Ah.01g023220 Amaranthus hybridus HOM05D006134 ORTHO05D007671 1.8e-42 176.4 122 64.8
CsaV3_2G009990 Cucumis sativus L. HOM05D006134 ORTHO05D007671 1.8e-42 176.4 123 64.2
Cpa.g.sc182.12 Carica papaya HOM05D006134 ORTHO05D007671 2.3e-42 176.0 117 67.5
Sopen06g002390 Solanum pennellii HOM05D006134 ORTHO05D007671 3.0e-42 175.6 122 65.6
PGSC0003DMG400020551 Solanum tuberosum HOM05D006134 ORTHO05D007671 3.0e-42 175.6 122 65.6
FvH4_5g23580 Fragaria vesca HOM05D006134 ORTHO05D007671 3.9e-42 175.3 117 69.2
FAN18G0426 Fragaria x ananassa HOM05D006134 ORTHO05D007671 3.9e-42 175.3 117 69.2
FAN18G3769 Fragaria x ananassa HOM05D006134 ORTHO05D007671 3.9e-42 175.3 117 69.2
Solyc06g007480.3 Solanum lycopersicum HOM05D006134 ORTHO05D007671 3.9e-42 175.3 122 65.6
CAN.G181.11 Capsicum annuum HOM05D006134 ORTHO05D007671 5.1e-42 174.9 122 65.6
FAN04G0013 Fragaria x ananassa HOM05D006134 ORTHO05D007671 5.1e-42 174.9 117 69.2
FAN08G0898 Fragaria x ananassa HOM05D006134 ORTHO05D007671 5.1e-42 174.9 117 69.2
Nitab4.5_0000101g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 5.1e-42 174.9 122 63.9
CiPaw.10G137600 Carya illinoinensis HOM05D006134 ORTHO05D007671 6.7e-42 174.5 122 63.9
MELO3C008634.2 Cucumis melo HOM05D006134 ORTHO05D007671 1.5e-41 173.3 122 63.9
Hund14365 Selenicereus undatus HOM05D006134 ORTHO05D007671 1.9e-41 172.9 122 63.9
Aqoxy5G01105 Aquilegia oxysepala HOM05D006134 ORTHO05D007671 2.5e-41 172.6 123 62.6
PSO170G0646 Papaver somniferum HOM05D006134 ORTHO05D007671 3.3e-41 172.2 123 64.2
PSO210G5022 Papaver somniferum HOM05D006134 ORTHO05D007671 4.3e-41 171.8 123 63.4
HanXRQChr10g0314981 Helianthus annuus HOM05D006134 ORTHO05D007671 1.6e-40 169.9 122 63.9
AUR62010905 Chenopodium quinoa HOM05D006134 ORTHO05D007671 2.1e-40 169.5 134 59.0
FAN13G0082 Fragaria x ananassa HOM05D006134 ORTHO05D007671 2.1e-40 169.5 117 66.7
Nitab4.5_0000890g0130 Nicotiana tabacum HOM05D006134 ORTHO05D007671 2.1e-40 169.5 129 62.8
PGR042G1126 Punica granatum HOM05D006134 ORTHO05D007671 2.8e-40 169.1 123 64.2
SGA_v2.0_scaffold207G41895 Striga asiatica HOM05D006134 ORTHO05D007671 3.7e-40 168.7 122 63.1
TWI79G0531 Tripterygium wilfordii HOM05D006134 ORTHO05D007671 1.8e-39 166.4 122 60.7
Aa31LG6G16690 Aethionema arabicum HOM05D006134 ORTHO05D007671 2.4e-39 166.0 123 63.4
MD12G1003500 Malus domestica HOM05D006134 ORTHO05D007671 2.4e-39 166.0 101 74.3
Oeu055649.1 Olea europaea HOM05D006134 ORTHO05D007671 3.1e-39 165.6 122 63.1
Os04g0274400 Oryza sativa ssp. japonica HOM05D006134 ORTHO05D007671 4.0e-39 165.2 117 61.5
THA.LOC104807806 Tarenaya hassleriana HOM05D006134 ORTHO05D007671 4.0e-39 165.2 123 62.6
Potri.016G127200 Populus trichocarpa HOM05D006134 ORTHO05D007671 5.3e-39 164.9 123 63.4
SalBow3G4511 Salvia bowleyana HOM05D006134 ORTHO05D007671 5.3e-39 164.9 122 62.3
AUR62013003 Chenopodium quinoa HOM05D006134 ORTHO05D007671 9.0e-39 164.1 101 73.3
Thecc.02G130200 Theobroma cacao HOM05D006134 ORTHO05D007671 9.0e-39 164.1 117 65.8
Sc08g0002730 Simmondsia chinensis HOM05D006134 ORTHO05D007671 1.2e-38 163.7 122 63.9
SGA_v2.0_scaffold80G25864 Striga asiatica HOM05D006134 ORTHO05D007671 1.5e-38 163.3 122 60.7
Sp7g37280 Schrenkiella parvula HOM05D006134 ORTHO05D007671 3.4e-38 162.2 122 62.3
COL.COLO4_32379 Corchorus olitorius HOM05D006134 ORTHO05D007671 1.7e-37 159.8 123 61.8
Thhalv10026572m.g Eutrema salsugineum HOM05D006134 ORTHO05D007671 2.2e-37 159.5 123 60.2
AUR62015152 Chenopodium quinoa HOM05D006134 ORTHO05D007671 4.9e-37 158.3 101 69.3
Migut.N01297 Erythranthe guttata HOM05D006134 ORTHO05D007671 4.9e-37 158.3 122 60.7
unitig_52.g17376 Utricularia gibba HOM05D006134 ORTHO05D007671 4.9e-37 158.3 122 59.0
Eucgr.F02572 Eucalyptus grandis HOM05D006134 ORTHO05D007671 6.5e-37 157.9 122 58.2
Dinv31631 Davidia involucrata HOM05D006134 ORTHO05D007671 8.4e-37 157.5 122 59.8
MSTRG.5438 Avicennia marina HOM05D006134 ORTHO05D007671 1.4e-36 156.8 122 59.0
AUR62010013 Chenopodium quinoa HOM05D006134 ORTHO05D007671 3.2e-36 155.6 101 69.3
Duzib052G0391 Durio zibethinus HOM05D006134 ORTHO05D007671 3.2e-36 155.6 123 60.2
Oeu002964.1 Olea europaea HOM05D006134 ORTHO05D007671 5.5e-36 154.8 122 59.0
Gohir.D01G010100 Gossypium hirsutum HOM05D006134 ORTHO05D007671 7.1e-36 154.5 123 60.2
Gorai.002G012200 Gossypium raimondii HOM05D006134 ORTHO05D007671 7.1e-36 154.5 123 60.2
ClCG11G010360 Citrullus lanatus HOM05D006134 ORTHO05D007671 1.2e-35 153.7 105 63.8
Carub.0007s0038 Capsella rubella HOM05D006134 ORTHO05D007671 3.5e-35 152.1 122 59.8
Gohir.A01G010500 Gossypium hirsutum HOM05D006134 ORTHO05D007671 7.9e-35 151.0 123 59.3
AT4G38495 Arabidopsis thaliana HOM05D006134 ORTHO05D007671 1.0e-34 150.6 122 57.4
HanXRQChr07g0198481 Helianthus annuus HOM05D006134 ORTHO05D007671 3.9e-34 148.7 122 56.6
Duzib248G0743 Durio zibethinus HOM05D006134 ORTHO05D007671 5.1e-34 148.3 148 51.4
AL7G10360 Arabidopsis lyrata HOM05D006134 ORTHO05D007671 6.7e-34 147.9 119 57.1
BcaNung01304 Brassica carinata HOM05D006134 ORTHO05D007671 2.5e-33 146.0 122 57.4
C01p00090 Brassica napus HOM05D006134 ORTHO05D007671 2.5e-33 146.0 122 57.4
Rhsim11G0193500 Rhododendron simsii HOM05D006134 ORTHO05D007671 4.3e-33 145.2 169 46.2
A01p00050 Brassica napus HOM05D006134 ORTHO05D007671 1.6e-32 143.3 122 56.6
Zm00001eb420290 Zea mays HOM05D006134 ORTHO05D007671 2.8e-32 142.5 103 58.3
BcaNung04221 Brassica carinata HOM05D006134 ORTHO05D007671 3.7e-32 142.1 123 56.9
Sed0020335 Sechium edule HOM05D006134 ORTHO05D007671 4.8e-32 141.7 123 54.5
vmacro02291 Vaccinium macrocarpon HOM05D006134 ORTHO05D007671 4.8e-32 141.7 201 39.8
Prupe.7G004000 Prunus persica HOM05D006134 ORTHO05D007671 6.3e-32 141.4 117 57.3
SEGI_00696 Sequoiadendron giganteum HOM05D006134 ORTHO05D007671 1.5e-22 110.2 66 71.2
Sabra16G0121200 Salix brachista HOM05D006134 ORTHO05D007671 5.5e-20 101.7 79 59.5
Sabra16G0122100 Salix brachista HOM05D006134 ORTHO05D007671 5.5e-20 101.7 79 59.5
Prupe.4G038000 Prunus persica HOM05D006134 ORTHO05D007671 7.9e-19 97.8 108 49.1
BolC1t00014H Brassica oleracea HOM05D006134 ORTHO05D007671 1.7e-16 90.1 78 53.8
BraA01t00010Z Brassica rapa HOM05D006134 ORTHO05D007671 8.2e-16 87.8 78 52.6
Nitab4.5_0000165g0190 Nicotiana tabacum HOM05D006134 ORTHO05D007671 6.9e-15 84.7 69 62.3
A07p02890 Brassica napus HOM05D006134 ORTHO05D007671 7.7e-14 81.3 75 50.7
BraA07t28089Z Brassica rapa HOM05D006134 ORTHO05D007671 7.7e-14 81.3 75 50.7
Ca_02994_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 1.3e-13 80.5 52 67.3
Ca_02756_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.2e-13 79.7 56 60.7
Ca_02758_v3 Cicer arietinum L. HOM05D006134 ORTHO05D007671 2.2e-13 79.7 56 60.7
TPR.G34385 Trifolium pratense HOM05D006134 ORTHO05D007671 1.1e-09 67.4 44 70.5
Sabra16G0121700 Salix brachista HOM05D006134 ORTHO05D007671 1.5e-09 67.0 45 66.7
Pp3c17_13790 Physcomitrium patens HOM05D006134 ORTHO05D308400 7.4e-09 64.7 75 53.3
EL10Ac8g18393 Beta vulgaris HOM05D006134 ORTHO05D007671 1.3e-08 63.9 48 66.7
SMO230G0118 Selaginella moellendorffii HOM05D006134 ORTHO05D007671 2.8e-08 62.8 40 67.5
SHI24498 Sapria himalayana HOM05D006134 ORTHO05D007671 8.2e-08 61.2 50 50.0
CARHR294230 Cardamine hirsuta HOM05D006134 ORTHO05D007671 1.8e-07 60.1 62 46.8


User provided reference genes

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