Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c14_10270 Physcomitrium patens HOM05D003801 ORTHO05D004812 0.0e+00 1443.7 773 100.0
Pp3c17_6540 Physcomitrium patens HOM05D003801 ORTHO05D004812 0.0e+00 1204.1 685 92.6
Mapoly0002s0142 Marchantia polymorpha HOM05D003801 ORTHO05D004812 4.2e-259 898.3 703 67.7
SMO347G0592 Selaginella moellendorffii HOM05D003801 ORTHO05D004812 8.3e-215 751.1 687 57.6
CDE04G3388 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 3.1e-214 749.2 693 54.4
Sed0013919 Sechium edule HOM05D003801 ORTHO05D004812 9.2e-214 747.7 689 54.9
EL10Ac7g15867 Beta vulgaris HOM05D003801 ORTHO05D004812 1.1e-211 740.7 689 55.4
Atru.chr1.2566 Acer truncatum HOM05D003801 ORTHO05D004812 4.4e-208 728.8 703 53.8
Atru.chr1.2574 Acer truncatum HOM05D003801 ORTHO05D004812 4.4e-208 728.8 703 53.8
RcHm_v2.0_Chr5g0072271 Rosa chinensis HOM05D003801 ORTHO05D004812 5.8e-208 728.4 689 54.3
GSVIVG01024601001 Vitis vinifera HOM05D003801 ORTHO05D004812 5.8e-208 728.4 699 52.8
Prupe.6G045000 Prunus persica HOM05D003801 ORTHO05D004812 7.5e-208 728.0 689 53.7
Thecc.09G360800 Theobroma cacao HOM05D003801 ORTHO05D004812 6.4e-207 724.9 694 54.6
Cpa.g.sc173.16 Carica papaya HOM05D003801 ORTHO05D004812 1.4e-206 723.8 700 54.0
Gohir.A03G024300 Gossypium hirsutum HOM05D003801 ORTHO05D004812 1.4e-206 723.8 694 54.5
TAR369G0201 Trochodendron aralioides HOM05D003801 ORTHO05D004812 3.2e-206 722.6 689 54.0
Gohir.D03G144200 Gossypium hirsutum HOM05D003801 ORTHO05D004812 4.1e-206 722.2 694 54.0
PGR004G1069 Punica granatum HOM05D003801 ORTHO05D004812 4.1e-206 722.2 689 53.8
Gorai.003G151500 Gossypium raimondii HOM05D003801 ORTHO05D004812 5.4e-206 721.8 694 54.0
TWI75G1891 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.2e-205 720.7 689 52.8
TWI79G0650 Tripterygium wilfordii HOM05D003801 ORTHO05D004812 1.2e-205 720.7 692 53.0
Potri.013G154300 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.0e-204 717.6 701 53.1
LjContig00141g0011314 Lotus japonicus HOM05D003801 ORTHO05D004812 1.3e-204 717.2 689 54.9
AUR62009720 Chenopodium quinoa HOM05D003801 ORTHO05D004812 1.7e-204 716.8 705 53.0
Sabra19G0130000 Salix brachista HOM05D003801 ORTHO05D004812 2.3e-204 716.5 700 53.3
FvH4_3g40080 Fragaria vesca HOM05D003801 ORTHO05D004812 3.0e-204 716.1 694 53.9
Manes.18G140750 Manihot esculenta HOM05D003801 ORTHO05D004812 3.0e-204 716.1 700 52.9
AUR62036227 Chenopodium quinoa HOM05D003801 ORTHO05D004812 6.6e-204 714.9 705 52.9
ClCG03G000210 Citrullus lanatus HOM05D003801 ORTHO05D004812 6.6e-204 714.9 696 53.6
QL01p018072 Quercus lobata HOM05D003801 ORTHO05D004812 6.6e-204 714.9 688 52.6
MELO3C020500.2 Cucumis melo HOM05D003801 ORTHO05D004812 8.6e-204 714.5 689 53.3
CsaV3_1G036690 Cucumis sativus L. HOM05D003801 ORTHO05D004812 1.9e-203 713.4 689 52.7
HanXRQChr08g0228441 Helianthus annuus HOM05D003801 ORTHO05D004812 1.2e-202 710.7 702 52.0
Sabra19G0125000 Salix brachista HOM05D003801 ORTHO05D004812 1.6e-202 710.3 708 52.8
Nn5g27878 Nelumbo nucifera HOM05D003801 ORTHO05D004812 4.7e-202 708.8 694 53.2
Carub.0001s0624 Capsella rubella HOM05D003801 ORTHO05D004812 1.4e-201 707.2 693 54.5
FAN11G2663 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.4e-201 707.2 697 52.8
Haze_24439 Corylus avellana HOM05D003801 ORTHO05D004812 2.3e-201 706.4 703 53.1
Nn1g08532 Nelumbo nucifera HOM05D003801 ORTHO05D004812 2.3e-201 706.4 714 52.5
TAR623G1445 Trochodendron aralioides HOM05D003801 ORTHO05D004812 2.3e-201 706.4 689 52.7
CARHR006620 Cardamine hirsuta HOM05D003801 ORTHO05D004812 3.1e-201 706.1 693 54.5
AL1G16990 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 4.0e-201 705.7 693 54.3
FAN21G1607 Fragaria x ananassa HOM05D003801 ORTHO05D004812 6.8e-201 704.9 692 52.7
Dinv28708 Davidia involucrata HOM05D003801 ORTHO05D004812 1.2e-200 704.1 690 52.8
Cfa011800 Carpinus fangiana HOM05D003801 ORTHO05D004812 2.6e-200 703.0 706 53.0
Ca_05689_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 2.6e-200 703.0 691 52.7
Hma1.2p1_1637F.1_g294880 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 4.4e-200 702.2 689 52.7
Eucgr.B04013 Eucalyptus grandis HOM05D003801 ORTHO05D004812 5.8e-200 701.8 704 51.8
CiPaw.13G066600 Carya illinoinensis HOM05D003801 ORTHO05D004812 7.5e-200 701.4 688 52.6
AT1G06950 Arabidopsis thaliana HOM05D003801 ORTHO05D004812 1.3e-199 700.7 693 54.1
CSS0002946 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 3.7e-199 699.1 689 52.8
Duzib168G2305 Durio zibethinus HOM05D003801 ORTHO05D004812 6.4e-199 698.4 689 53.6
VMungo0647G2088 Vigna mungo HOM05D003801 ORTHO05D004812 8.3e-199 698.0 689 52.0
ATR0584G141 Amborella trichopoda HOM05D003801 ORTHO05D004812 3.2e-198 696.0 689 53.4
Glyma.14G201500 Glycine max HOM05D003801 ORTHO05D004812 3.2e-198 696.0 689 52.2
MD03G1058800 Malus domestica HOM05D003801 ORTHO05D004812 5.4e-198 695.3 689 52.2
Sp1g05660 Schrenkiella parvula HOM05D003801 ORTHO05D004812 7.0e-198 694.9 691 53.4
Thhalv10006671m.g Eutrema salsugineum HOM05D003801 ORTHO05D004812 9.2e-198 694.5 698 53.0
C08p02740 Brassica napus HOM05D003801 ORTHO05D004812 1.2e-197 694.1 691 54.1
Psat2g052760 Pisum sativum HOM05D003801 ORTHO05D004812 1.2e-197 694.1 689 51.8
Potri.019G127000 Populus trichocarpa HOM05D003801 ORTHO05D004812 1.2e-197 694.1 689 52.0
BraA08t35491Z Brassica rapa HOM05D003801 ORTHO05D004812 2.7e-197 693.0 691 54.0
BraA10t42811Z Brassica rapa HOM05D003801 ORTHO05D004812 2.7e-197 693.0 691 53.1
Oeu044915.1 Olea europaea HOM05D003801 ORTHO05D004812 3.5e-197 692.6 690 51.4
BcaC05g24660 Brassica carinata HOM05D003801 ORTHO05D004812 6.0e-197 691.8 699 52.8
BolC5t29277H Brassica oleracea HOM05D003801 ORTHO05D004812 6.0e-197 691.8 699 52.8
CANSAT54G0450 Cannabis sativa HOM05D003801 ORTHO05D004812 6.0e-197 691.8 692 52.7
A08p35840 Brassica napus HOM05D003801 ORTHO05D004812 1.0e-196 691.0 691 53.8
BolC8t47069H Brassica oleracea HOM05D003801 ORTHO05D004812 1.0e-196 691.0 688 53.9
Glyma.02G233700 Glycine max HOM05D003801 ORTHO05D004812 1.0e-196 691.0 689 52.1
MSTRG.18544 Avicennia marina HOM05D003801 ORTHO05D004812 1.7e-196 690.3 692 52.0
ECA247G0395 Erigeron canadensis HOM05D003801 ORTHO05D004812 3.0e-196 689.5 689 52.2
Lalb_Chr10g0103681 Lupinus albus HOM05D003801 ORTHO05D004812 1.9e-195 686.8 696 52.7
MSTRG.17901 Avicennia marina HOM05D003801 ORTHO05D004812 3.3e-195 686.0 689 51.5
Aa31LG5G6380 Aethionema arabicum HOM05D003801 ORTHO05D004812 5.6e-195 685.3 710 52.8
Medtr5g074690 Medicago truncatula HOM05D003801 ORTHO05D004812 5.6e-195 685.3 689 51.8
Sc17g0002560 Simmondsia chinensis HOM05D003801 ORTHO05D004812 5.6e-195 685.3 690 51.7
CAN.G1702.5 Capsicum annuum HOM05D003801 ORTHO05D004812 7.3e-195 684.9 688 51.0
Cc01_g15070 Coffea canephora HOM05D003801 ORTHO05D004812 1.2e-194 684.1 697 51.6
Sabra13G0124100 Salix brachista HOM05D003801 ORTHO05D004812 2.8e-194 682.9 727 49.7
Medtr3g466170 Medicago truncatula HOM05D003801 ORTHO05D004812 5.2e-193 678.7 689 51.2
DCAR_028861 Daucus carota HOM05D003801 ORTHO05D004812 1.5e-192 677.2 693 50.9
Psat5g150840 Pisum sativum HOM05D003801 ORTHO05D004812 2.0e-192 676.8 693 50.2
FAN16G2780 Fragaria x ananassa HOM05D003801 ORTHO05D004812 2.9e-191 672.9 716 50.6
Phvul.008G250000 Phaseolus vulgaris HOM05D003801 ORTHO05D004812 2.9e-191 672.9 694 50.4
COL.COLO4_11183 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.4e-190 670.6 641 54.8
Migut.D00836 Erythranthe guttata HOM05D003801 ORTHO05D004812 9.2e-190 667.9 693 49.9
Hund05047 Selenicereus undatus HOM05D003801 ORTHO05D004812 1.2e-189 667.5 688 51.0
Peaxi162Scf00095g00168 Petunia axillaris HOM05D003801 ORTHO05D004812 2.1e-189 666.8 690 51.9
SEGI_40714 Sequoiadendron giganteum HOM05D003801 ORTHO05D004812 2.1e-189 666.8 692 51.4
TPR.G24942 Trifolium pratense HOM05D003801 ORTHO05D004812 2.1e-189 666.8 690 50.7
A10p05480 Brassica napus HOM05D003801 ORTHO05D004812 2.7e-189 666.4 738 49.7
PSO339G1799 Papaver somniferum HOM05D003801 ORTHO05D004812 2.5e-187 659.8 706 49.4
Lsat_1_v5_gn_9_14381 Lactuca sativa HOM05D003801 ORTHO05D004812 4.3e-187 659.1 692 50.4
PSO384G0852 Papaver somniferum HOM05D003801 ORTHO05D004812 4.3e-187 659.1 706 50.0
MD11G1060900 Malus domestica HOM05D003801 ORTHO05D004812 5.6e-187 658.7 686 51.0
TPR.G17744 Trifolium pratense HOM05D003801 ORTHO05D004812 2.1e-186 656.8 689 49.9
CBR_g29785 Chara braunii HOM05D003801 ORTHO05D004812 3.1e-185 652.9 695 49.5
arahy.Tifrunner.gnm1.ann1.Z7TKRX Arachis hypogaea HOM05D003801 ORTHO05D004812 1.5e-184 650.6 650 51.7
Glyma.18G055700 Glycine max HOM05D003801 ORTHO05D004812 5.8e-184 648.7 689 50.4
FAN25G2625 Fragaria x ananassa HOM05D003801 ORTHO05D004812 1.3e-183 647.5 724 48.8
Solyc09g031780.3 Solanum lycopersicum HOM05D003801 ORTHO05D004812 2.2e-183 646.7 691 49.9
Sopen09g014770 Solanum pennellii HOM05D003801 ORTHO05D004812 1.0e-180 637.9 689 49.8
Ca_13017_v3 Cicer arietinum L. HOM05D003801 ORTHO05D004812 6.2e-178 628.6 689 48.6
unitig_747.g21451 Utricularia gibba HOM05D003801 ORTHO05D004812 1.4e-177 627.5 670 48.4
Aqoxy2G00749 Aquilegia oxysepala HOM05D003801 ORTHO05D004812 1.8e-177 627.1 695 49.9
Eucgr.I01027 Eucalyptus grandis HOM05D003801 ORTHO05D004812 2.2e-175 620.2 623 51.5
Zm00001eb044910 Zea mays HOM05D003801 ORTHO05D004812 2.3e-172 610.1 699 47.1
Actinidia32598 Actinidia chinensis HOM05D003801 ORTHO05D004812 3.0e-172 609.8 700 47.0
Ciclev10000209m.g Citrus clementina HOM05D003801 ORTHO05D004812 5.1e-172 609.0 565 54.0
SGA_v2.0_scaffold20G09298 Striga asiatica HOM05D003801 ORTHO05D004812 4.0e-169 599.4 708 46.2
Lj1A123G49 Lonicera japonica HOM05D003801 ORTHO05D004812 2.2e-167 593.6 685 47.0
Rhsim13G0062300 Rhododendron simsii HOM05D003801 ORTHO05D004812 4.2e-166 589.3 736 44.2
vmacro02901 Vaccinium macrocarpon HOM05D003801 ORTHO05D004812 2.7e-157 560.1 694 44.5
Sabra19G0125200 Salix brachista HOM05D003801 ORTHO05D004812 7.7e-144 515.4 963 36.3
Cc01_g14930 Coffea canephora HOM05D003801 ORTHO05D004812 1.7e-138 497.7 512 50.0
HPP92_014541 Vanilla planifolia HOM05D003801 ORTHO05D004812 7.9e-133 478.8 571 44.5
BcaB02g06769 Brassica carinata HOM05D003801 ORTHO05D004812 5.1e-132 476.1 466 56.4
Lj1A124T30 Lonicera japonica HOM05D003801 ORTHO05D004812 5.7e-131 472.6 498 47.6
Os10g0492000 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 7.7e-128 462.2 499 47.7
SHI19243 Sapria himalayana HOM05D003801 ORTHO05D004812 1.8e-121 441.0 619 41.4
PRCOL_00000154 Prasinoderma coloniale HOM05D003801 ORTHO05D004812 7.5e-115 419.1 744 34.5
MCO16G620 Micromonas commoda HOM05D003801 ORTHO05D004812 1.5e-107 394.8 711 31.8
Sabra19G0125100 Salix brachista HOM05D003801 ORTHO05D004812 1.7e-103 381.3 586 39.6
Nitab4.5_0004906g0050 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.0e-100 370.2 407 48.6
Cre10.g452450 Chlamydomonas reinhardtii HOM05D003801 ORTHO05D004812 3.2e-81 307.4 725 30.3
BcaB03g13435 Brassica carinata HOM05D003801 ORTHO05D004812 2.1e-80 304.7 305 51.1
Oeu050040.1 Olea europaea HOM05D003801 ORTHO05D004812 2.0e-75 288.1 279 53.4
QL05p055919 Quercus lobata HOM05D003801 ORTHO05D004812 4.4e-75 287.0 383 42.8
Dinv12255 Davidia involucrata HOM05D003801 ORTHO05D004812 2.7e-72 277.7 290 49.7
Nitab4.5_0000486g0130 Nicotiana tabacum HOM05D003801 ORTHO05D004812 4.6e-72 276.9 287 49.5
Nitab4.5_0004637g0060 Nicotiana tabacum HOM05D003801 ORTHO05D004812 5.1e-71 273.5 287 49.1
Dinv12256 Davidia involucrata HOM05D003801 ORTHO05D004812 2.5e-70 271.2 276 50.7
Lj6A615T91 Lonicera japonica HOM05D003801 ORTHO05D004812 4.0e-68 263.8 571 31.5
Sabra19G0124700 Salix brachista HOM05D003801 ORTHO05D004812 1.5e-67 261.9 261 51.0
Sabra19G0125300 Salix brachista HOM05D003801 ORTHO05D004812 1.5e-67 261.9 257 51.4
AL1G17110 Arabidopsis lyrata HOM05D003801 ORTHO05D004812 8.4e-66 256.1 220 57.7
QL05p056751 Quercus lobata HOM05D003801 ORTHO05D004812 6.6e-63 246.5 277 48.7
Hma1.2p1_0613F.1_g189200 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.1e-56 224.9 311 45.3
PSO339G3141 Papaver somniferum HOM05D003801 ORTHO05D004812 3.5e-56 224.2 244 47.1
Hma1.2p1_1586F.1_g292110 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 2.3e-47 194.9 242 47.1
Hma1.2p1_1421F.1_g282490 Hydrangea macrophylla HOM05D003801 ORTHO05D004812 1.9e-46 191.8 209 45.9
arahy.Tifrunner.gnm1.ann1.WCY7KD Arachis hypogaea HOM05D003801 ORTHO05D004812 2.6e-43 181.4 190 49.5
CDE07G0188 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.9e-41 175.3 225 43.6
CDE07G0033 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 6.0e-40 170.2 450 27.8
C01p22580 Brassica napus HOM05D003801 ORTHO05D017532 3.9e-39 167.5 425 32.5
BolC1t01884H Brassica oleracea HOM05D003801 ORTHO05D017532 5.1e-39 167.2 429 31.7
CDE07G0464 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 1.4e-36 159.1 164 52.4
PSO339G0950 Papaver somniferum HOM05D003801 ORTHO05D004812 2.2e-34 151.8 183 42.1
Cc01_g14940 Coffea canephora HOM05D003801 ORTHO05D004812 5.7e-30 137.1 154 49.4
TAR624G1267 Trochodendron aralioides HOM05D004621 ORTHO05D005817 7.4e-30 136.7 103 64.1
CDE07G0490 Ceratophyllum demersum HOM05D003801 ORTHO05D004812 2.8e-29 134.8 299 31.4
CSS0035288 Camellia sinensis var. sinensis HOM05D003801 ORTHO05D004812 3.7e-29 134.4 124 54.0
SEGI_21560 Sequoiadendron giganteum HOM05D003801 ORTHO05D010437 2.5e-22 111.7 167 41.3
Glyma.11G162400 Glycine max HOM05D003801 ORTHO05D004812 9.7e-22 109.8 136 40.4
C05p05050 Brassica napus HOM05D003801 ORTHO05D004812 2.2e-21 108.6 102 51.0
BcaC09g51691 Brassica carinata HOM05D003801 ORTHO05D017532 3.7e-21 107.8 94 52.1
BcaC09g50643 Brassica carinata HOM05D003801 ORTHO05D017532 4.8e-21 107.5 168 41.7
COL.COLO4_07614 Corchorus olitorius HOM05D003801 ORTHO05D004812 1.1e-20 106.3 180 38.9
VMungo1215G2313 Vigna mungo HOM05D003801 ORTHO05D004812 3.1e-20 104.8 236 31.4
Oeu050039.1 Olea europaea HOM05D003801 ORTHO05D004812 3.4e-19 101.3 219 35.6
Os10g0492300 Oryza sativa ssp. japonica HOM05D003801 ORTHO05D004812 6.5e-18 97.1 142 35.9
TAR629G1141 Trochodendron aralioides HOM05D000566 ORTHO05D000686 1.0e-15 89.7 72 58.3
BolC1t02191H Brassica oleracea HOM05D003801 ORTHO05D017532 5.1e-15 87.4 199 32.7
COL.COLO4_04363 Corchorus olitorius HOM05D003801 ORTHO05D008122 8.2e-13 80.1 74 50.0
C05p05030 Brassica napus HOM05D001129 ORTHO05D003814 2.9e-10 71.6 81 53.1


User provided reference genes

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